Wall clock time and date at job start Tue Mar 31 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47223 * 2 1 4 4 C 1.36048 * 117.00023 * 180.02562 * 3 2 1 5 5 C 1.38571 * 120.07261 * 270.23681 * 4 3 2 6 6 Br 1.89104 * 119.99336 * 0.04513 * 5 4 3 7 7 C 1.38349 * 120.01800 * 180.27448 * 5 4 3 8 8 C 1.38363 * 120.15362 * 359.74709 * 7 5 4 9 9 Cl 1.73603 * 119.93151 * 180.02562 * 8 7 5 10 10 C 1.38314 * 120.13834 * 0.02562 * 8 7 5 11 11 C 1.38742 * 119.98544 * 359.97438 * 10 8 7 12 12 N 1.39966 * 120.07579 * 179.97438 * 11 10 8 13 13 C 1.46499 * 120.00127 * 0.02562 * 12 11 10 14 14 C 1.50701 * 109.46992 * 179.97438 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47117 * 59.99412 * 21 19 17 23 23 H 1.48498 * 109.47600 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46756 * 300.00019 * 21 19 17 25 25 H 1.09000 * 109.46535 * 299.99584 * 1 2 3 26 26 H 1.09001 * 109.47378 * 59.99386 * 1 2 3 27 27 H 1.08994 * 109.47299 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46950 * 240.00758 * 2 1 3 29 29 H 1.09001 * 109.47378 * 120.00614 * 2 1 3 30 30 H 1.07999 * 119.92550 * 179.76795 * 7 5 4 31 31 H 1.08007 * 120.00693 * 180.02562 * 10 8 7 32 32 H 0.97000 * 119.99452 * 179.97438 * 12 11 10 33 33 H 1.09002 * 109.47391 * 59.99748 * 13 12 11 34 34 H 1.09001 * 109.46813 * 299.99805 * 13 12 11 35 35 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 36 36 H 0.97000 * 119.99884 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3551 1.5255 -0.0005 5 6 4.0447 1.6114 1.1984 6 35 3.1109 1.4796 2.8375 7 6 5.4155 1.7984 1.1965 8 6 6.1022 1.8948 -0.0008 9 17 7.8224 2.1287 0.0036 10 6 5.4210 1.8053 -1.2012 11 6 4.0463 1.6178 -1.2061 12 7 3.3550 1.5275 -2.4198 13 6 4.0830 1.6303 -3.6869 14 6 3.1147 1.5015 -4.8344 15 8 1.9327 1.3401 -4.6153 16 7 3.5620 1.5666 -6.1042 17 6 2.6810 1.4499 -7.1481 18 1 1.6286 1.3054 -6.9530 19 6 3.1422 1.5164 -8.4571 20 7 4.4228 1.6917 -8.6945 21 14 1.9418 1.3581 -9.8795 22 1 0.9328 2.4446 -9.7989 23 1 2.6796 1.4627 -11.1640 24 1 1.2585 0.0417 -9.8064 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 5.9509 1.8688 2.1318 31 1 5.9592 1.8804 -2.1346 32 1 2.3939 1.3961 -2.4218 33 1 4.8240 0.8331 -3.7460 34 1 4.5841 2.5968 -3.7406 35 1 4.5072 1.6959 -6.2793 36 1 4.7447 1.7386 -9.6083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079020571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:30 Heat of formation + Delta-G solvation = -71.746598 kcal Electronic energy + Delta-G solvation = -23164.001912 eV Core-core repulsion = 19333.766317 eV Total energy + Delta-G solvation = -3830.235595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 375.998 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.43761 -40.23214 -38.76021 -37.50664 -36.57964 -35.87186 -33.39720 -33.03578 -32.52148 -30.63131 -29.87273 -28.27090 -26.29353 -24.28998 -23.30521 -22.96776 -21.21491 -20.07347 -19.41175 -18.60228 -17.80943 -17.33505 -16.65699 -16.57005 -16.21735 -16.11372 -15.87094 -15.69335 -15.18800 -15.04797 -14.64901 -14.07002 -14.00437 -13.82375 -13.53923 -13.40772 -13.12804 -12.95676 -12.85090 -12.51243 -12.47595 -12.39705 -12.14896 -12.05677 -12.00807 -11.57456 -11.31880 -10.93288 -10.84887 -10.55938 -10.10262 -9.67903 -8.58896 -8.52235 -6.01828 -0.26430 0.16565 0.39668 1.08647 1.36841 1.41895 1.51879 1.90970 2.05659 2.18263 2.33649 2.69567 3.11261 3.15256 3.88549 3.93945 4.01976 4.04816 4.13062 4.21910 4.24024 4.36293 4.39925 4.42584 4.49447 4.85855 4.87503 4.98578 5.04849 5.19766 5.24109 5.36890 5.81895 5.99321 6.35398 6.48863 6.57088 7.03825 7.43861 7.96088 8.64175 Molecular weight = 376.00amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.002549 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.094624 B =10982.875642 C =13062.507259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 O -0.331 6.331 4 C 0.035 3.965 5 C -0.059 4.059 6 Br -0.020 7.020 7 C -0.133 4.133 8 C 0.017 3.983 9 Cl -0.047 7.047 10 C -0.173 4.173 11 C 0.218 3.782 12 N -0.719 5.719 13 C 0.122 3.878 14 C 0.429 3.571 15 O -0.629 6.629 16 N -0.557 5.557 17 C -0.339 4.339 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.913 5.913 21 Si 0.992 3.008 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.271 1.271 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.409 0.591 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.400 0.600 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.217 -1.713 22.683 23.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 O -0.248 6.248 4 C -0.016 4.016 5 C -0.140 4.140 6 Br 0.066 6.934 7 C -0.155 4.155 8 C -0.012 4.012 9 Cl -0.018 7.018 10 C -0.198 4.198 11 C 0.109 3.891 12 N -0.348 5.348 13 C -0.005 4.005 14 C 0.216 3.784 15 O -0.516 6.516 16 N -0.193 5.193 17 C -0.468 4.468 18 H 0.100 0.900 19 C -0.208 4.208 20 N -0.553 5.553 21 Si 0.815 3.185 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.196 1.196 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.178 0.822 31 H 0.173 0.827 32 H 0.247 0.753 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.235 0.765 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.312 -1.686 23.029 23.327 hybrid contribution 0.035 -0.116 -1.443 1.448 sum 3.347 -1.802 21.586 21.918 Atomic orbital electron populations 1.21746 0.91849 1.03703 1.02987 1.22900 0.96719 0.81646 1.00686 1.86159 1.16416 1.28194 1.94015 1.17924 0.84405 1.09252 0.90043 1.21860 0.94613 1.06157 0.91327 1.96699 1.76305 1.96964 1.23460 1.20763 0.91165 1.05147 0.98459 1.20482 0.85682 1.01342 0.93677 1.98388 1.09530 1.95017 1.98887 1.20682 0.91471 1.08560 0.99044 1.17944 0.91252 0.94618 0.85248 1.44473 1.10667 1.78496 1.01209 1.20976 0.93591 1.04304 0.81654 1.20558 0.89468 0.83602 0.84754 1.90498 1.19227 1.57202 1.84724 1.41801 1.10801 1.62533 1.04189 1.19644 0.92121 1.49500 0.85554 0.90028 1.26034 0.98321 0.95828 1.00567 1.69650 1.14156 1.48514 1.23001 0.85001 0.77731 0.78995 0.76729 1.19715 1.19459 1.19607 0.91007 0.92898 0.88771 0.93953 0.91665 0.82171 0.82740 0.75264 0.87774 0.87957 0.76501 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 10.28 71.98 0.74 -2.25 16 2 C 0.05 1.30 6.78 71.98 0.49 1.79 16 3 O -0.33 -9.25 8.63 -94.09 -0.81 -10.07 16 4 C 0.03 0.93 5.73 22.60 0.13 1.06 16 5 C -0.06 -1.36 6.23 22.38 0.14 -1.22 16 6 Br -0.02 -0.40 33.11 -20.37 -0.67 -1.08 16 7 C -0.13 -2.70 9.56 22.33 0.21 -2.49 16 8 C 0.02 0.35 6.32 22.32 0.14 0.49 16 9 Cl -0.05 -0.88 28.95 -2.72 -0.08 -0.95 16 10 C -0.17 -4.06 9.09 22.41 0.20 -3.85 16 11 C 0.22 5.98 6.67 38.21 0.25 6.23 16 12 N -0.72 -22.76 5.70 -342.71 -1.95 -24.72 16 13 C 0.12 3.88 5.40 85.63 0.46 4.34 16 14 C 0.43 19.03 7.85 87.66 0.69 19.72 16 15 O -0.63 -32.67 15.24 -3.07 -0.05 -32.72 16 16 N -0.56 -26.82 5.29 -306.98 -1.62 -28.44 16 17 C -0.34 -18.34 9.68 84.04 0.81 -17.53 16 18 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 19 C -0.01 -0.33 5.50 84.92 0.47 0.14 16 20 N -0.91 -47.07 13.05 21.66 0.28 -46.78 16 21 Si 0.99 41.19 29.55 68.60 2.03 43.22 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 30 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 31 H 0.16 3.22 6.74 -2.91 -0.02 3.20 16 32 H 0.41 14.79 6.80 -92.71 -0.63 14.16 16 33 H 0.10 2.81 7.95 -2.39 -0.02 2.79 16 34 H 0.10 2.82 7.95 -2.39 -0.02 2.80 16 35 H 0.40 18.07 7.90 -92.71 -0.73 17.33 16 36 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -60.75 351.48 1.65 -59.10 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -0.21 Total: 36.00 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 4.74 Total: 6.44 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -3.29 Total: -99.94 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -0.86 Total: -42.78 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.95 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -0.67 Total: -1.08 kcal Total: -60.75 1.65 -59.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079020571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.650 kcal (2) G-P(sol) polarization free energy of solvation -60.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds