Wall clock time and date at job start Tue Mar 31 2020 05:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76200 * 103.00288 * 2 1 4 4 C 1.38862 * 120.01326 * 0.02562 * 3 2 1 5 5 C 1.38103 * 120.00993 * 179.97438 * 4 3 2 6 6 C 1.38844 * 120.04598 * 0.04110 * 5 4 3 7 7 N 1.40196 * 119.98042 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99747 * 35.10295 * 7 6 5 9 9 O 1.21592 * 119.99965 * 355.40895 * 8 7 6 10 10 N 1.34780 * 119.99845 * 175.40704 * 8 7 6 11 11 C 1.46501 * 119.99726 * 359.97438 * 10 8 7 12 12 C 1.50701 * 109.47110 * 269.99684 * 11 10 8 13 13 H 1.07997 * 120.00215 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99747 * 180.02562 * 12 11 10 15 15 N 1.31502 * 120.00157 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99692 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47027 * 60.00244 * 16 14 12 18 18 H 1.48497 * 109.47034 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47260 * 300.00145 * 16 14 12 20 20 C 1.46497 * 120.00199 * 180.02562 * 10 8 7 21 21 C 1.50702 * 109.47265 * 89.99876 * 20 10 8 22 22 C 1.38227 * 119.61780 * 95.02084 * 21 20 10 23 23 C 1.38630 * 119.15835 * 179.74732 * 22 21 20 24 24 C 1.38668 * 118.42065 * 0.47292 * 23 22 21 25 25 C 1.38182 * 119.16640 * 359.50996 * 24 23 22 26 26 N 1.31856 * 119.61528 * 275.00020 * 21 20 10 27 27 C 1.38841 * 120.03397 * 0.25456 * 6 5 4 28 28 C 1.38221 * 119.98900 * 359.43075 * 27 6 5 29 29 F 1.35099 * 120.02815 * 180.27177 * 28 27 6 30 30 H 1.08991 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46915 * 299.99887 * 1 2 3 32 32 H 1.09001 * 109.47273 * 59.99740 * 1 2 3 33 33 H 1.07996 * 119.99708 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.97692 * 180.02562 * 5 4 3 35 35 H 0.96993 * 119.99847 * 215.09623 * 7 6 5 36 36 H 1.08991 * 109.47522 * 30.00059 * 11 10 8 37 37 H 1.09001 * 109.47103 * 150.00269 * 11 10 8 38 38 H 0.97009 * 120.00263 * 179.97438 * 15 14 12 39 39 H 1.09010 * 109.46918 * 330.00041 * 20 10 8 40 40 H 1.08995 * 109.47357 * 210.00363 * 20 10 8 41 41 H 1.08002 * 120.41653 * 359.96309 * 22 21 20 42 42 H 1.07999 * 120.78433 * 180.23700 * 23 22 21 43 43 H 1.08003 * 120.41571 * 179.78307 * 24 23 22 44 44 H 1.07997 * 119.62140 * 180.25373 * 25 24 23 45 45 H 1.08007 * 120.00809 * 179.71873 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6641 0.0005 5 6 1.5060 4.0097 0.0011 6 6 2.8334 4.4166 0.0002 7 7 3.1474 5.7830 0.0002 8 6 2.3681 6.6534 0.6721 9 8 1.3475 6.2671 1.2083 10 7 2.7201 7.9521 0.7496 11 6 3.9501 8.4174 0.1040 12 6 5.0985 8.3089 1.0738 13 1 4.9292 7.9308 2.0712 14 6 6.3654 8.6924 0.6878 15 7 6.5715 9.1533 -0.5265 16 14 7.7890 8.5573 1.8897 17 1 7.9537 7.1409 2.3047 18 1 9.0357 9.0290 1.2354 19 1 7.5093 9.3938 3.0844 20 6 1.8734 8.8982 1.4804 21 6 2.3107 8.9543 2.9215 22 6 3.1941 9.9360 3.3296 23 6 3.5859 9.9820 4.6586 24 6 3.0799 9.0287 5.5292 25 6 2.2002 8.0774 5.0489 26 7 1.8457 8.0667 3.7786 27 6 3.8501 3.4710 -0.0065 28 6 3.5407 2.1239 -0.0005 29 9 4.5293 1.2032 -0.0015 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 0.1623 2.3486 0.0005 34 1 0.7159 4.7461 0.0019 35 1 3.9255 6.1017 -0.4832 36 1 4.1554 7.8028 -0.7724 37 1 3.8295 9.4568 -0.2013 38 1 7.4628 9.4234 -0.7980 39 1 0.8347 8.5715 1.4283 40 1 1.9656 9.8882 1.0339 41 1 3.5716 10.6600 2.6227 42 1 4.2720 10.7400 5.0067 43 1 3.3663 9.0323 6.5705 44 1 1.7984 7.3340 5.7214 45 1 4.8826 3.7880 -0.0118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083992935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:57 Heat of formation + Delta-G solvation = 4.346553 kcal Electronic energy + Delta-G solvation = -31599.203722 eV Core-core repulsion = 27237.096561 eV Total energy + Delta-G solvation = -4362.107160 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 375.116 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.77776 -40.35476 -39.62667 -38.25530 -35.33564 -34.39167 -32.84551 -32.01977 -31.39004 -30.79041 -29.43603 -28.86381 -27.74196 -26.00500 -23.36716 -23.06708 -22.81329 -22.65048 -21.58150 -19.49386 -18.24581 -17.55625 -17.26494 -16.77092 -16.39105 -16.20106 -15.81225 -15.59064 -15.45764 -15.19432 -15.10954 -14.66936 -14.40772 -14.29217 -14.18804 -13.86206 -13.47263 -13.23382 -13.09106 -12.83950 -12.78552 -12.69746 -12.46786 -12.37982 -12.15700 -11.81056 -11.50879 -11.40253 -11.31789 -11.06598 -10.84962 -10.42525 -10.38664 -10.32186 -9.91457 -9.49368 -9.39912 -9.00022 -8.75373 -8.71780 -8.69150 -8.56429 -7.89117 -7.15795 -6.30557 -4.37919 1.14975 1.30160 1.42911 1.47698 1.72381 2.31237 3.10217 3.15661 3.21804 3.26014 3.47863 3.95630 4.14528 4.22835 4.35298 4.62286 4.72851 4.82217 4.87932 4.89085 5.02919 5.15193 5.17396 5.23322 5.34535 5.42349 5.45052 5.52100 5.57356 5.76952 5.88584 5.90503 6.00584 6.12173 6.16488 6.26003 6.42973 6.49799 6.54736 6.58175 6.66954 6.92994 7.09982 7.15429 7.22011 7.57705 7.65215 7.90137 8.39570 8.48776 8.72151 9.12155 9.31674 10.75545 Molecular weight = 375.12amu Principal moments of inertia in cm(-1) A = 0.009104 B = 0.002986 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.789803 B = 9375.901512 C =10874.991628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.111 6.111 3 C -0.153 4.153 4 C -0.087 4.087 5 C -0.115 4.115 6 C 0.215 3.785 7 N -0.681 5.681 8 C 0.711 3.289 9 O -0.581 6.581 10 N -0.604 5.604 11 C 0.238 3.762 12 C -0.535 4.535 13 H 0.060 0.940 14 C 0.069 3.931 15 N -0.890 5.890 16 Si 0.891 3.109 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.189 3.811 21 C 0.121 3.879 22 C -0.132 4.132 23 C -0.085 4.085 24 C -0.180 4.180 25 C 0.087 3.913 26 N -0.458 5.458 27 C -0.172 4.172 28 C 0.137 3.863 29 F -0.131 7.131 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.153 0.847 35 H 0.419 0.581 36 H 0.031 0.969 37 H 0.042 0.958 38 H 0.267 0.733 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.136 0.864 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.146 0.854 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 -6.426 2.084 11.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.129 5.871 3 C -0.267 4.267 4 C -0.111 4.111 5 C -0.137 4.137 6 C 0.115 3.885 7 N -0.330 5.330 8 C 0.413 3.587 9 O -0.460 6.460 10 N -0.337 5.337 11 C 0.118 3.882 12 C -0.573 4.573 13 H 0.078 0.922 14 C -0.134 4.134 15 N -0.528 5.528 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.201 1.201 20 C 0.064 3.936 21 C -0.018 4.018 22 C -0.152 4.152 23 C -0.111 4.111 24 C -0.201 4.201 25 C -0.071 4.071 26 N -0.167 5.167 27 C -0.195 4.195 28 C 0.112 3.888 29 F -0.109 7.109 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.150 0.850 34 H 0.170 0.830 35 H 0.259 0.741 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.154 0.846 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.164 0.836 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.161 -8.200 2.031 13.214 hybrid contribution 1.740 1.811 0.931 2.679 sum -8.421 -6.390 2.962 10.978 Atomic orbital electron populations 1.23674 0.95047 1.06900 1.05801 1.85475 1.05985 1.02331 1.93323 1.21549 0.94800 0.97800 1.12583 1.20867 0.97714 0.92163 1.00349 1.21343 0.96149 0.95656 1.00548 1.17294 0.92505 0.82901 0.95793 1.42958 1.32150 1.03958 1.53914 1.15729 0.82844 0.81333 0.78811 1.90862 1.26041 1.77349 1.51699 1.47333 1.26430 1.05543 1.54443 1.19429 0.79824 0.96358 0.92587 1.21417 0.92302 1.44126 0.99500 0.92203 1.24887 0.98666 0.94682 0.95204 1.69889 1.22902 1.42440 1.17540 0.86648 0.81449 0.78804 0.81210 1.20155 1.21090 1.20104 1.20010 0.95126 0.93161 0.85296 1.21667 0.93589 0.90351 0.96237 1.21994 0.96968 1.00055 0.96184 1.21502 0.97877 0.98080 0.93653 1.22040 0.99971 0.97342 1.00697 1.22643 0.95114 0.97003 0.92322 1.67574 1.23948 1.22562 1.02623 1.20776 1.00668 0.90240 1.07852 1.16630 0.83050 0.85758 1.03403 1.91500 1.60351 1.65292 1.93794 0.87523 0.89641 0.89688 0.85013 0.82986 0.74064 0.95081 0.94007 0.92355 0.89082 0.89204 0.84576 0.85466 0.85661 0.83632 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.15 101.05 0.92 -0.26 16 2 S -0.11 -1.37 22.16 -107.50 -2.38 -3.75 16 3 C -0.15 -2.22 6.11 -39.03 -0.24 -2.46 16 4 C -0.09 -1.20 9.36 -39.40 -0.37 -1.57 16 5 C -0.11 -1.83 8.69 -39.41 -0.34 -2.17 16 6 C 0.21 3.67 6.30 -83.58 -0.53 3.14 16 7 N -0.68 -12.53 5.22 -14.17 -0.07 -12.61 16 8 C 0.71 14.29 8.12 -86.92 -0.71 13.59 16 9 O -0.58 -12.47 13.35 5.28 0.07 -12.40 16 10 N -0.60 -11.81 2.44 -182.18 -0.44 -12.26 16 11 C 0.24 5.08 5.01 -5.19 -0.03 5.05 16 12 C -0.53 -12.80 9.23 -34.44 -0.32 -13.12 16 13 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -22.84 13.28 55.43 0.74 -22.11 16 16 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 C 0.19 3.30 5.76 -5.19 -0.03 3.27 16 21 C 0.12 2.20 6.36 -82.58 -0.53 1.68 16 22 C -0.13 -2.22 9.57 -39.44 -0.38 -2.60 16 23 C -0.09 -1.29 10.18 -39.28 -0.40 -1.69 16 24 C -0.18 -2.60 10.11 -39.44 -0.40 -2.99 16 25 C 0.09 1.40 11.18 -17.55 -0.20 1.20 16 26 N -0.46 -8.69 10.27 -9.47 -0.10 -8.79 16 27 C -0.17 -2.78 9.93 -39.36 -0.39 -3.17 16 28 C 0.14 2.17 7.27 -39.26 -0.29 1.88 16 29 F -0.13 -2.10 16.75 2.25 0.04 -2.06 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.66 7.74 -51.93 -0.40 0.26 16 32 H 0.08 0.62 7.75 -51.92 -0.40 0.22 16 33 H 0.13 1.44 5.86 -52.49 -0.31 1.14 16 34 H 0.15 2.55 6.22 -52.49 -0.33 2.22 16 35 H 0.42 7.66 6.52 -40.82 -0.27 7.40 16 36 H 0.03 0.68 6.30 -51.93 -0.33 0.36 16 37 H 0.04 0.92 7.89 -51.93 -0.41 0.51 16 38 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 39 H 0.09 1.58 7.42 -51.92 -0.39 1.20 16 40 H 0.09 1.34 7.79 -51.93 -0.40 0.94 16 41 H 0.14 2.20 8.06 -52.49 -0.42 1.77 16 42 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 44 H 0.15 1.96 8.06 -52.49 -0.42 1.53 16 45 H 0.14 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 400.19 15.07 6.03 6.03 Total: -1.00 -29.25 400.19 -10.76 -40.01 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -5.31 Total: 11.58 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -4.30 Total: 1.40 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.12 Total: -55.76 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.07 Total: -12.40 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.38 Total: -3.75 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.25 -10.76 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083992935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.357 kcal (2) G-P(sol) polarization free energy of solvation -29.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds