Wall clock time and date at job start Tue Mar 31 2020 05:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76200 * 103.00288 * 2 1 4 4 C 1.38862 * 120.01326 * 0.02562 * 3 2 1 5 5 C 1.38103 * 120.00993 * 179.97438 * 4 3 2 6 6 C 1.38844 * 120.04598 * 0.04110 * 5 4 3 7 7 N 1.40196 * 119.98042 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99747 * 35.10295 * 7 6 5 9 9 O 1.21592 * 119.99965 * 355.40895 * 8 7 6 10 10 N 1.34780 * 119.99845 * 175.40704 * 8 7 6 11 11 C 1.46501 * 119.99726 * 359.97438 * 10 8 7 12 12 C 1.50701 * 109.47110 * 269.99684 * 11 10 8 13 13 H 1.07997 * 120.00215 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99747 * 180.02562 * 12 11 10 15 15 N 1.31502 * 120.00157 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99692 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47027 * 60.00244 * 16 14 12 18 18 H 1.48497 * 109.47034 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47260 * 300.00145 * 16 14 12 20 20 C 1.46497 * 120.00199 * 180.02562 * 10 8 7 21 21 C 1.50702 * 109.47265 * 89.99876 * 20 10 8 22 22 C 1.38227 * 119.61780 * 95.02084 * 21 20 10 23 23 C 1.38630 * 119.15835 * 179.74732 * 22 21 20 24 24 C 1.38668 * 118.42065 * 0.47292 * 23 22 21 25 25 C 1.38182 * 119.16640 * 359.50996 * 24 23 22 26 26 N 1.31856 * 119.61528 * 275.00020 * 21 20 10 27 27 C 1.38841 * 120.03397 * 0.25456 * 6 5 4 28 28 C 1.38221 * 119.98900 * 359.43075 * 27 6 5 29 29 F 1.35099 * 120.02815 * 180.27177 * 28 27 6 30 30 H 1.08991 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46915 * 299.99887 * 1 2 3 32 32 H 1.09001 * 109.47273 * 59.99740 * 1 2 3 33 33 H 1.07996 * 119.99708 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.97692 * 180.02562 * 5 4 3 35 35 H 0.96993 * 119.99847 * 215.09623 * 7 6 5 36 36 H 1.08991 * 109.47522 * 30.00059 * 11 10 8 37 37 H 1.09001 * 109.47103 * 150.00269 * 11 10 8 38 38 H 0.97009 * 120.00263 * 179.97438 * 15 14 12 39 39 H 1.09010 * 109.46918 * 330.00041 * 20 10 8 40 40 H 1.08995 * 109.47357 * 210.00363 * 20 10 8 41 41 H 1.08002 * 120.41653 * 359.96309 * 22 21 20 42 42 H 1.07999 * 120.78433 * 180.23700 * 23 22 21 43 43 H 1.08003 * 120.41571 * 179.78307 * 24 23 22 44 44 H 1.07997 * 119.62140 * 180.25373 * 25 24 23 45 45 H 1.08007 * 120.00809 * 179.71873 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6641 0.0005 5 6 1.5060 4.0097 0.0011 6 6 2.8334 4.4166 0.0002 7 7 3.1474 5.7830 0.0002 8 6 2.3681 6.6534 0.6721 9 8 1.3475 6.2671 1.2083 10 7 2.7201 7.9521 0.7496 11 6 3.9501 8.4174 0.1040 12 6 5.0985 8.3089 1.0738 13 1 4.9292 7.9308 2.0712 14 6 6.3654 8.6924 0.6878 15 7 6.5715 9.1533 -0.5265 16 14 7.7890 8.5573 1.8897 17 1 7.9537 7.1409 2.3047 18 1 9.0357 9.0290 1.2354 19 1 7.5093 9.3938 3.0844 20 6 1.8734 8.8982 1.4804 21 6 2.3107 8.9543 2.9215 22 6 3.1941 9.9360 3.3296 23 6 3.5859 9.9820 4.6586 24 6 3.0799 9.0287 5.5292 25 6 2.2002 8.0774 5.0489 26 7 1.8457 8.0667 3.7786 27 6 3.8501 3.4710 -0.0065 28 6 3.5407 2.1239 -0.0005 29 9 4.5293 1.2032 -0.0015 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 0.1623 2.3486 0.0005 34 1 0.7159 4.7461 0.0019 35 1 3.9255 6.1017 -0.4832 36 1 4.1554 7.8028 -0.7724 37 1 3.8295 9.4568 -0.2013 38 1 7.4628 9.4234 -0.7980 39 1 0.8347 8.5715 1.4283 40 1 1.9656 9.8882 1.0339 41 1 3.5716 10.6600 2.6227 42 1 4.2720 10.7400 5.0067 43 1 3.3663 9.0323 6.5705 44 1 1.7984 7.3340 5.7214 45 1 4.8826 3.7880 -0.0118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083992935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:56 Heat of formation + Delta-G solvation = -9.492604 kcal Electronic energy + Delta-G solvation = -31599.803833 eV Core-core repulsion = 27237.096561 eV Total energy + Delta-G solvation = -4362.707271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 375.116 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.02160 -41.79033 -40.88878 -39.58279 -36.89521 -35.81848 -34.64428 -33.29623 -32.70565 -31.97339 -30.63778 -29.66142 -29.45454 -27.42611 -25.05865 -24.31104 -24.04591 -24.01684 -22.85885 -20.94453 -19.57442 -18.89927 -18.73001 -18.39775 -17.70592 -17.45535 -17.11562 -16.87149 -16.78562 -16.60379 -16.35915 -16.31825 -15.77368 -15.54895 -15.25123 -14.90213 -14.60685 -14.50700 -14.43312 -14.23569 -14.07826 -13.89130 -13.80721 -13.55683 -13.41606 -13.26776 -13.14917 -12.77608 -12.66582 -12.53587 -12.48778 -12.10643 -11.78280 -11.67392 -11.36827 -10.98534 -10.69240 -10.60132 -10.30938 -10.04607 -9.92079 -9.85578 -9.43615 -8.27491 -8.19492 -6.32187 -0.07815 0.07240 0.23344 0.47294 0.49221 1.36381 1.40813 1.43680 1.45616 1.68635 2.09067 2.37411 2.57781 2.81736 3.10179 3.12099 3.21285 3.49875 3.64115 3.91619 4.03503 4.06279 4.11324 4.23493 4.29924 4.30502 4.33239 4.35198 4.50839 4.63301 4.65105 4.79754 4.84027 4.85175 4.90502 4.94457 5.02192 5.13153 5.18354 5.29744 5.36381 5.38115 5.60005 5.75142 5.85425 5.89543 6.03167 6.06062 6.67621 6.95453 7.22116 7.37978 7.59009 8.83706 Molecular weight = 375.12amu Principal moments of inertia in cm(-1) A = 0.009104 B = 0.002986 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.789803 B = 9375.901512 C =10874.991628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.132 6.132 3 C -0.149 4.149 4 C -0.077 4.077 5 C -0.118 4.118 6 C 0.191 3.809 7 N -0.681 5.681 8 C 0.706 3.294 9 O -0.598 6.598 10 N -0.604 5.604 11 C 0.252 3.748 12 C -0.526 4.526 13 H 0.041 0.959 14 C 0.035 3.965 15 N -0.912 5.912 16 Si 0.937 3.063 17 H -0.284 1.284 18 H -0.282 1.282 19 H -0.270 1.270 20 C 0.186 3.814 21 C 0.101 3.899 22 C -0.145 4.145 23 C -0.090 4.090 24 C -0.170 4.170 25 C 0.071 3.929 26 N -0.493 5.493 27 C -0.175 4.175 28 C 0.122 3.878 29 F -0.135 7.135 30 H 0.131 0.869 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.165 0.835 34 H 0.143 0.857 35 H 0.417 0.583 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.267 0.733 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.137 0.863 42 H 0.154 0.846 43 H 0.163 0.837 44 H 0.168 0.832 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.379 -7.217 3.319 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.108 5.892 3 C -0.263 4.263 4 C -0.101 4.101 5 C -0.140 4.140 6 C 0.092 3.908 7 N -0.329 5.329 8 C 0.408 3.592 9 O -0.477 6.477 10 N -0.337 5.337 11 C 0.131 3.869 12 C -0.565 4.565 13 H 0.059 0.941 14 C -0.167 4.167 15 N -0.552 5.552 16 Si 0.764 3.236 17 H -0.211 1.211 18 H -0.208 1.208 19 H -0.195 1.195 20 C 0.062 3.938 21 C -0.038 4.038 22 C -0.165 4.165 23 C -0.116 4.116 24 C -0.190 4.190 25 C -0.086 4.086 26 N -0.203 5.203 27 C -0.198 4.198 28 C 0.096 3.904 29 F -0.113 7.113 30 H 0.149 0.851 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.182 0.818 34 H 0.161 0.839 35 H 0.256 0.744 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.128 0.872 41 H 0.155 0.845 42 H 0.172 0.828 43 H 0.180 0.820 44 H 0.185 0.815 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.854 -9.008 3.267 14.479 hybrid contribution 1.858 1.925 0.599 2.742 sum -8.995 -7.083 3.866 12.085 Atomic orbital electron populations 1.23846 0.90995 1.08886 1.06875 1.85609 1.10439 1.00308 1.92823 1.21792 0.94306 0.99504 1.10694 1.21153 0.99159 0.90948 0.98835 1.21342 0.95343 0.96574 1.00773 1.17461 0.93332 0.82312 0.97719 1.42893 1.31781 1.04508 1.53733 1.15872 0.82899 0.81557 0.78856 1.90835 1.26759 1.77613 1.52541 1.47303 1.26015 1.05798 1.54572 1.19132 0.79942 0.95842 0.91951 1.21407 0.93096 1.43185 0.98832 0.94113 1.25371 1.00302 0.94763 0.96224 1.69951 1.23235 1.43450 1.18531 0.85934 0.79589 0.78132 0.79979 1.21051 1.20758 1.19479 1.20170 0.94465 0.93603 0.85584 1.21684 0.94678 0.91159 0.96260 1.22104 0.97104 0.99973 0.97355 1.21901 0.97901 0.98776 0.93012 1.22420 0.98369 0.95866 1.02348 1.23131 0.95577 0.98059 0.91817 1.67530 1.25273 1.23466 1.04051 1.20774 1.00550 0.90533 1.07905 1.16775 0.83774 0.85535 1.04291 1.91484 1.60623 1.65300 1.93910 0.85079 0.88790 0.88332 0.81788 0.83906 0.74369 0.95604 0.94496 0.92366 0.89515 0.87200 0.84529 0.82812 0.81951 0.81536 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.15 113.37 1.04 -0.72 16 2 S -0.13 -2.99 22.16 -56.49 -1.25 -4.25 16 3 C -0.15 -4.14 6.11 22.63 0.14 -4.01 16 4 C -0.08 -2.01 9.36 22.39 0.21 -1.80 16 5 C -0.12 -3.75 8.69 22.38 0.19 -3.56 16 6 C 0.19 6.65 6.30 38.09 0.24 6.89 16 7 N -0.68 -25.88 5.22 -317.01 -1.66 -27.53 16 8 C 0.71 29.15 8.12 179.05 1.45 30.60 16 9 O -0.60 -26.21 13.35 -4.01 -0.05 -26.26 16 10 N -0.60 -24.15 2.44 -848.56 -2.07 -26.22 16 11 C 0.25 10.97 5.01 85.63 0.43 11.40 16 12 C -0.53 -25.42 9.23 25.60 0.24 -25.18 16 13 H 0.04 2.12 7.81 -2.91 -0.02 2.10 16 14 C 0.03 1.70 5.46 84.66 0.46 2.17 16 15 N -0.91 -46.94 13.28 21.45 0.28 -46.66 16 16 Si 0.94 40.64 29.54 68.60 2.03 42.67 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 C 0.19 6.62 5.76 85.63 0.49 7.11 16 21 C 0.10 3.70 6.36 42.55 0.27 3.97 16 22 C -0.14 -4.82 9.57 22.36 0.21 -4.60 16 23 C -0.09 -2.55 10.18 22.47 0.23 -2.32 16 24 C -0.17 -4.49 10.11 22.36 0.23 -4.26 16 25 C 0.07 2.21 11.18 84.67 0.95 3.16 16 26 N -0.49 -18.74 10.27 -183.88 -1.89 -20.63 16 27 C -0.17 -5.77 9.93 22.41 0.22 -5.54 16 28 C 0.12 3.84 7.27 22.48 0.16 4.01 16 29 F -0.13 -4.33 16.75 44.97 0.75 -3.57 16 30 H 0.13 1.09 8.14 -2.40 -0.02 1.07 16 31 H 0.09 1.11 7.74 -2.39 -0.02 1.09 16 32 H 0.10 1.05 7.75 -2.39 -0.02 1.03 16 33 H 0.16 3.11 5.86 -2.91 -0.02 3.09 16 34 H 0.14 4.83 6.22 -2.91 -0.02 4.81 16 35 H 0.42 15.88 6.52 -92.71 -0.60 15.27 16 36 H 0.03 1.17 6.30 -2.39 -0.02 1.15 16 37 H 0.04 1.65 7.89 -2.39 -0.02 1.63 16 38 H 0.27 13.27 8.31 -92.70 -0.77 12.50 16 39 H 0.09 3.12 7.42 -2.38 -0.02 3.10 16 40 H 0.11 3.33 7.79 -2.39 -0.02 3.31 16 41 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 42 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 43 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 44 H 0.17 4.22 8.06 -2.91 -0.02 4.19 16 45 H 0.14 4.62 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -63.12 400.19 3.75 -59.36 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: 0.44 Total: 35.78 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 7.17 Total: 17.31 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -5.33 Total: -121.04 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.05 Total: -26.26 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.75 Total: -3.57 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -1.25 Total: -4.25 kcal Total: -63.12 3.75 -59.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083992935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.871 kcal (2) G-P(sol) polarization free energy of solvation -63.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds