Wall clock time and date at job start Tue Mar 31 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38237 * 120.00031 * 2 1 4 4 C 1.38234 * 120.00119 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00311 * 0.10059 * 4 3 2 6 6 C 1.50695 * 120.00402 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.46673 * 339.99540 * 6 5 4 8 8 N 1.46890 * 109.47179 * 219.99688 * 6 5 4 9 9 C 1.46905 * 111.00289 * 161.00790 * 8 6 5 10 10 C 1.50698 * 109.47508 * 179.97438 * 9 8 6 11 11 O 1.21292 * 119.99832 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00086 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99989 * 179.97438 * 12 10 9 14 14 H 1.08003 * 119.99917 * 0.02562 * 13 12 10 15 15 C 1.38951 * 120.00095 * 180.02562 * 13 12 10 16 16 N 1.31412 * 120.00062 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99959 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47077 * 89.99999 * 17 15 13 19 19 H 1.48504 * 109.46724 * 210.00000 * 17 15 13 20 20 H 1.48497 * 109.46905 * 329.99498 * 17 15 13 21 21 C 1.50701 * 109.47484 * 99.99497 * 6 5 4 22 22 C 1.38244 * 119.98129 * 92.51863 * 21 6 5 23 23 C 1.38185 * 120.03927 * 179.73215 * 22 21 6 24 24 C 1.38490 * 119.99694 * 0.54403 * 23 22 21 25 25 F 1.35105 * 120.01790 * 179.75128 * 24 23 22 26 26 C 1.38411 * 119.96506 * 359.72972 * 24 23 22 27 27 C 1.38339 * 119.96250 * 359.97438 * 26 24 23 28 28 Cl 1.73594 * 120.00148 * 180.02562 * 27 26 24 29 29 C 1.38235 * 119.99449 * 359.97438 * 5 4 3 30 30 C 1.38228 * 120.00524 * 359.97438 * 29 5 4 31 31 H 1.09007 * 109.47162 * 269.86498 * 1 2 3 32 32 H 1.08998 * 109.47625 * 29.86223 * 1 2 3 33 33 H 1.09000 * 109.47118 * 149.86663 * 1 2 3 34 34 H 1.08002 * 119.99965 * 0.09031 * 3 2 1 35 35 H 1.07999 * 119.99924 * 180.36619 * 4 3 2 36 36 H 1.00896 * 111.00390 * 284.96140 * 8 6 5 37 37 H 1.09002 * 109.46925 * 300.00251 * 9 8 6 38 38 H 1.09001 * 109.47007 * 59.99584 * 9 8 6 39 39 H 0.96998 * 120.00103 * 0.02562 * 12 10 9 40 40 H 0.97000 * 120.00376 * 180.02562 * 16 15 13 41 41 H 1.08005 * 119.97970 * 0.02562 * 22 21 6 42 42 H 1.07998 * 119.99825 * 180.25758 * 23 22 21 43 43 H 1.07995 * 120.02119 * 180.02562 * 26 24 23 44 44 H 1.08005 * 119.99675 * 179.97438 * 29 5 4 45 45 H 1.07995 * 120.00442 * 179.97438 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 -0.0010 6 6 5.7787 0.0001 -0.0010 7 1 6.1420 0.9663 -0.3514 8 7 6.2683 -1.0597 -0.8926 9 6 7.6665 -0.8214 -1.2754 10 6 8.1330 -1.9267 -2.1873 11 8 7.3752 -2.8244 -2.4891 12 7 9.3920 -1.9172 -2.6684 13 6 9.8165 -2.9231 -3.4976 14 1 9.1420 -3.7228 -3.7657 15 6 11.1146 -2.9136 -3.9932 16 7 11.9355 -1.9407 -3.6666 17 14 11.6929 -4.2837 -5.1236 18 1 11.4165 -3.9113 -6.5343 19 1 13.1522 -4.4914 -4.9432 20 1 10.9697 -5.5375 -4.7917 21 6 6.2811 -0.2483 1.3979 22 6 6.5610 -1.5370 1.8127 23 6 7.0271 -1.7656 3.0934 24 6 7.2032 -0.7046 3.9658 25 9 7.6540 -0.9281 5.2196 26 6 6.9176 0.5851 3.5523 27 6 6.4569 0.8128 2.2679 28 17 6.0990 2.4300 1.7481 29 6 3.5805 -1.1970 -0.0026 30 6 2.1982 -1.1971 -0.0021 31 1 -0.3634 -0.0024 1.0277 32 1 -0.3634 0.8912 -0.5117 33 1 -0.3633 -0.8888 -0.5159 34 1 1.6581 2.1325 0.0015 35 1 4.1204 2.1325 0.0065 36 1 6.1596 -1.9684 -0.4679 37 1 7.7435 0.1345 -1.7935 38 1 8.2896 -0.8012 -0.3813 39 1 9.9979 -1.1992 -2.4274 40 1 12.8416 -1.9339 -4.0128 41 1 6.4199 -2.3651 1.1339 42 1 7.2495 -2.7722 3.4154 43 1 7.0550 1.4132 4.2317 44 1 4.1206 -2.1324 -0.0042 45 1 1.6583 -2.1324 -0.0037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084148706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:20 Heat of formation + Delta-G solvation = -34.853791 kcal Electronic energy + Delta-G solvation = -31133.145346 eV Core-core repulsion = 26669.575963 eV Total energy + Delta-G solvation = -4463.569383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.109 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.20065 -40.46470 -39.00542 -38.22806 -36.79119 -36.03901 -33.95558 -32.75228 -31.31415 -31.25254 -30.92040 -30.80101 -28.18530 -26.36363 -24.70434 -24.11493 -23.05553 -22.57718 -21.86973 -20.37704 -19.34506 -18.28422 -17.92761 -16.95571 -16.81102 -16.50532 -15.91326 -15.63434 -15.41033 -15.25321 -15.02350 -14.60179 -14.49100 -14.18086 -14.10570 -13.91741 -13.84677 -13.68473 -13.47082 -13.26541 -13.12237 -12.75353 -12.41695 -12.28192 -12.13442 -11.87053 -11.75456 -11.60126 -11.53671 -11.42287 -11.29316 -11.09514 -11.05096 -10.76797 -10.40797 -10.23599 -9.52906 -9.31273 -8.91710 -8.86709 -8.58412 -8.50195 -8.20489 -7.98537 -6.43359 -3.84311 0.65364 0.74220 1.33057 1.44740 1.73350 3.09521 3.16802 3.25703 3.31115 3.68386 3.87370 3.92391 4.00758 4.24104 4.35212 4.49230 4.58994 4.74434 4.79368 4.86539 4.97690 5.03377 5.07794 5.13783 5.18748 5.24303 5.37781 5.43127 5.48598 5.55671 5.57850 5.67838 5.71548 5.74855 5.79212 5.91127 5.92977 6.03625 6.09387 6.21899 6.38657 6.41402 6.58153 6.60929 6.99807 7.08028 7.46676 7.53637 8.03838 8.58618 9.15763 9.51871 10.02695 10.74251 Molecular weight = 376.11amu Principal moments of inertia in cm(-1) A = 0.007740 B = 0.002779 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3616.549881 B =10073.847953 C =12100.123210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.123 4.123 4 C -0.103 4.103 5 C -0.065 4.065 6 C 0.164 3.836 7 H 0.105 0.895 8 N -0.650 5.650 9 C 0.047 3.953 10 C 0.441 3.559 11 O -0.583 6.583 12 N -0.562 5.562 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.901 5.901 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 C -0.106 4.106 22 C -0.076 4.076 23 C -0.139 4.139 24 C 0.108 3.892 25 F -0.134 7.134 26 C -0.145 4.145 27 C 0.001 3.999 28 Cl -0.052 7.052 29 C -0.087 4.087 30 C -0.121 4.121 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.349 0.651 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.122 0.878 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.625 8.369 15.212 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.121 4.121 5 C -0.066 4.066 6 C 0.053 3.947 7 H 0.123 0.877 8 N -0.283 5.283 9 C -0.086 4.086 10 C 0.227 3.773 11 O -0.468 6.468 12 N -0.198 5.198 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.542 5.542 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.109 4.109 22 C -0.094 4.094 23 C -0.158 4.158 24 C 0.089 3.911 25 F -0.112 7.112 26 C -0.164 4.164 27 C -0.026 4.026 28 Cl -0.023 7.023 29 C -0.106 4.106 30 C -0.139 4.139 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.172 0.828 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.140 0.860 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.184 8.187 14.350 23.127 hybrid contribution 1.447 -0.249 0.617 1.593 sum -14.737 7.938 14.967 22.455 Atomic orbital electron populations 1.20772 0.91519 1.02642 1.02023 1.19888 0.95848 0.93307 1.00012 1.20914 0.93948 0.97355 1.01887 1.20977 0.94108 0.97354 0.99694 1.19434 0.93234 0.93530 1.00402 1.19548 0.91625 0.97968 0.85554 0.87737 1.60339 1.19912 1.04775 1.43250 1.21759 0.88373 0.99962 0.98482 1.19703 0.83348 0.88360 0.85922 1.90526 1.54469 1.38780 1.62983 1.41849 1.10475 1.24608 1.42860 1.19697 0.96635 1.03586 1.22977 0.87884 1.25265 0.95855 0.98239 0.98529 1.69611 1.07193 1.32186 1.45206 0.85865 0.77653 0.80828 0.79993 1.20363 1.20939 1.19402 1.20699 0.99973 0.92316 0.97957 1.20882 0.96797 0.96300 0.95436 1.21240 1.01470 0.99335 0.93725 1.17439 0.99821 0.93441 0.80436 1.91530 1.86580 1.95369 1.37738 1.20930 1.02944 0.96619 0.95950 1.20393 1.01966 0.86503 0.93773 1.98375 1.93047 1.20441 1.90414 1.20914 0.93900 0.97779 0.97988 1.20983 0.94106 0.97432 1.01425 0.91455 0.91728 0.91633 0.86350 0.86220 0.82783 0.89241 0.93558 0.77441 0.91840 0.83809 0.83783 0.83643 0.86012 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.09 -0.94 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 4 C -0.10 -1.18 9.24 -39.58 -0.37 -1.54 16 5 C -0.07 -0.82 4.94 -104.63 -0.52 -1.33 16 6 C 0.16 2.08 1.97 -70.02 -0.14 1.94 16 7 H 0.10 1.32 6.64 -51.93 -0.34 0.98 16 8 N -0.65 -10.03 5.30 -110.46 -0.59 -10.62 16 9 C 0.05 0.80 5.93 -4.97 -0.03 0.77 16 10 C 0.44 10.12 7.82 -10.99 -0.09 10.04 16 11 O -0.58 -15.32 15.78 5.55 0.09 -15.23 16 12 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 13 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 14 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 17 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C -0.11 -1.24 4.48 -104.58 -0.47 -1.71 16 22 C -0.08 -0.85 9.18 -39.60 -0.36 -1.21 16 23 C -0.14 -1.45 10.03 -39.51 -0.40 -1.85 16 24 C 0.11 1.17 7.30 -39.42 -0.29 0.88 16 25 F -0.13 -1.49 17.27 2.25 0.04 -1.45 16 26 C -0.14 -1.49 9.81 -39.48 -0.39 -1.88 16 27 C 0.00 0.01 6.31 -39.50 -0.25 -0.24 16 28 Cl -0.05 -0.52 25.72 -51.86 -1.33 -1.86 16 29 C -0.09 -1.08 9.31 -39.59 -0.37 -1.45 16 30 C -0.12 -1.36 9.70 -39.58 -0.38 -1.74 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.24 6.83 -52.49 -0.36 0.88 16 36 H 0.35 5.33 4.94 -39.29 -0.19 5.14 16 37 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 38 H 0.05 0.73 7.72 -51.93 -0.40 0.33 16 39 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.14 1.58 6.00 -52.48 -0.31 1.27 16 42 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.12 1.47 7.06 -52.48 -0.37 1.10 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 397.24 15.07 5.99 5.99 Total: -1.00 -30.89 397.24 -10.27 -41.16 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -5.19 Total: 14.76 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -4.92 Total: -10.96 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.08 Total: -48.29 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.09 Total: -15.23 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.33 Total: -1.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.89 -10.27 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084148706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.309 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds