Wall clock time and date at job start Tue Mar 31 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38237 * 120.00031 * 2 1 4 4 C 1.38234 * 120.00119 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00311 * 0.10059 * 4 3 2 6 6 C 1.50695 * 120.00402 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.46673 * 339.99540 * 6 5 4 8 8 N 1.46890 * 109.47179 * 219.99688 * 6 5 4 9 9 C 1.46905 * 111.00289 * 161.00790 * 8 6 5 10 10 C 1.50698 * 109.47508 * 179.97438 * 9 8 6 11 11 O 1.21292 * 119.99832 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00086 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99989 * 179.97438 * 12 10 9 14 14 H 1.08003 * 119.99917 * 0.02562 * 13 12 10 15 15 C 1.38951 * 120.00095 * 180.02562 * 13 12 10 16 16 N 1.31412 * 120.00062 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99959 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47077 * 89.99999 * 17 15 13 19 19 H 1.48504 * 109.46724 * 210.00000 * 17 15 13 20 20 H 1.48497 * 109.46905 * 329.99498 * 17 15 13 21 21 C 1.50701 * 109.47484 * 99.99497 * 6 5 4 22 22 C 1.38244 * 119.98129 * 92.51863 * 21 6 5 23 23 C 1.38185 * 120.03927 * 179.73215 * 22 21 6 24 24 C 1.38490 * 119.99694 * 0.54403 * 23 22 21 25 25 F 1.35105 * 120.01790 * 179.75128 * 24 23 22 26 26 C 1.38411 * 119.96506 * 359.72972 * 24 23 22 27 27 C 1.38339 * 119.96250 * 359.97438 * 26 24 23 28 28 Cl 1.73594 * 120.00148 * 180.02562 * 27 26 24 29 29 C 1.38235 * 119.99449 * 359.97438 * 5 4 3 30 30 C 1.38228 * 120.00524 * 359.97438 * 29 5 4 31 31 H 1.09007 * 109.47162 * 269.86498 * 1 2 3 32 32 H 1.08998 * 109.47625 * 29.86223 * 1 2 3 33 33 H 1.09000 * 109.47118 * 149.86663 * 1 2 3 34 34 H 1.08002 * 119.99965 * 0.09031 * 3 2 1 35 35 H 1.07999 * 119.99924 * 180.36619 * 4 3 2 36 36 H 1.00896 * 111.00390 * 284.96140 * 8 6 5 37 37 H 1.09002 * 109.46925 * 300.00251 * 9 8 6 38 38 H 1.09001 * 109.47007 * 59.99584 * 9 8 6 39 39 H 0.96998 * 120.00103 * 0.02562 * 12 10 9 40 40 H 0.97000 * 120.00376 * 180.02562 * 16 15 13 41 41 H 1.08005 * 119.97970 * 0.02562 * 22 21 6 42 42 H 1.07998 * 119.99825 * 180.25758 * 23 22 21 43 43 H 1.07995 * 120.02119 * 180.02562 * 26 24 23 44 44 H 1.08005 * 119.99675 * 179.97438 * 29 5 4 45 45 H 1.07995 * 120.00442 * 179.97438 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 -0.0010 6 6 5.7787 0.0001 -0.0010 7 1 6.1420 0.9663 -0.3514 8 7 6.2683 -1.0597 -0.8926 9 6 7.6665 -0.8214 -1.2754 10 6 8.1330 -1.9267 -2.1873 11 8 7.3752 -2.8244 -2.4891 12 7 9.3920 -1.9172 -2.6684 13 6 9.8165 -2.9231 -3.4976 14 1 9.1420 -3.7228 -3.7657 15 6 11.1146 -2.9136 -3.9932 16 7 11.9355 -1.9407 -3.6666 17 14 11.6929 -4.2837 -5.1236 18 1 11.4165 -3.9113 -6.5343 19 1 13.1522 -4.4914 -4.9432 20 1 10.9697 -5.5375 -4.7917 21 6 6.2811 -0.2483 1.3979 22 6 6.5610 -1.5370 1.8127 23 6 7.0271 -1.7656 3.0934 24 6 7.2032 -0.7046 3.9658 25 9 7.6540 -0.9281 5.2196 26 6 6.9176 0.5851 3.5523 27 6 6.4569 0.8128 2.2679 28 17 6.0990 2.4300 1.7481 29 6 3.5805 -1.1970 -0.0026 30 6 2.1982 -1.1971 -0.0021 31 1 -0.3634 -0.0024 1.0277 32 1 -0.3634 0.8912 -0.5117 33 1 -0.3633 -0.8888 -0.5159 34 1 1.6581 2.1325 0.0015 35 1 4.1204 2.1325 0.0065 36 1 6.1596 -1.9684 -0.4679 37 1 7.7435 0.1345 -1.7935 38 1 8.2896 -0.8012 -0.3813 39 1 9.9979 -1.1992 -2.4274 40 1 12.8416 -1.9339 -4.0128 41 1 6.4199 -2.3651 1.1339 42 1 7.2495 -2.7722 3.4154 43 1 7.0550 1.4132 4.2317 44 1 4.1206 -2.1324 -0.0042 45 1 1.6583 -2.1324 -0.0037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084148706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:19 Heat of formation + Delta-G solvation = -51.101899 kcal Electronic energy + Delta-G solvation = -31133.849917 eV Core-core repulsion = 26669.575963 eV Total energy + Delta-G solvation = -4464.273954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.109 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.05772 -41.40830 -40.02707 -39.82197 -37.63473 -37.15129 -35.91024 -33.76322 -33.22582 -32.12602 -31.83766 -31.73483 -29.20118 -27.76468 -26.02391 -25.33667 -24.00385 -23.44446 -22.75644 -21.28933 -21.10550 -19.93176 -19.14283 -18.16499 -17.86069 -17.40376 -17.15224 -16.77073 -16.40787 -16.33634 -16.18573 -15.89692 -15.81948 -15.72118 -15.22162 -14.92425 -14.70792 -14.67385 -14.41700 -14.25313 -14.22569 -13.97476 -13.62873 -13.44849 -13.30444 -13.09289 -12.88586 -12.84878 -12.63005 -12.49069 -12.40841 -12.30497 -12.12907 -12.12086 -11.93722 -11.60863 -11.50203 -10.37496 -10.14523 -10.01352 -9.77942 -9.74398 -9.55494 -9.31327 -8.46141 -5.94707 -0.20602 -0.09638 0.47284 0.58345 0.90467 1.38238 1.42322 1.54744 2.04555 2.24313 2.28497 2.72274 2.92748 3.08300 3.21209 3.47387 3.51211 3.56314 3.78807 3.89443 3.95122 4.05975 4.15592 4.21630 4.26849 4.30236 4.34897 4.44461 4.56186 4.62352 4.64319 4.71300 4.75312 4.88088 4.91552 4.93780 4.99938 5.06626 5.24089 5.32285 5.41699 5.53810 5.55248 5.65444 5.76698 5.87965 6.04893 6.18511 6.25262 6.59698 7.12798 7.56081 8.10650 8.71238 Molecular weight = 376.11amu Principal moments of inertia in cm(-1) A = 0.007740 B = 0.002779 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3616.549881 B =10073.847953 C =12100.123210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.128 4.128 4 C -0.110 4.110 5 C -0.080 4.080 6 C 0.172 3.828 7 H 0.106 0.894 8 N -0.661 5.661 9 C 0.063 3.937 10 C 0.442 3.558 11 O -0.619 6.619 12 N -0.572 5.572 13 C -0.331 4.331 14 H 0.080 0.920 15 C -0.013 4.013 16 N -0.921 5.921 17 Si 0.991 3.009 18 H -0.272 1.272 19 H -0.272 1.272 20 H -0.271 1.271 21 C -0.112 4.112 22 C -0.084 4.084 23 C -0.138 4.138 24 C 0.102 3.898 25 F -0.136 7.136 26 C -0.141 4.141 27 C -0.004 4.004 28 Cl -0.044 7.044 29 C -0.105 4.105 30 C -0.132 4.132 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.141 0.859 35 H 0.128 0.872 36 H 0.348 0.652 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.141 0.859 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.115 0.885 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.282 9.292 15.852 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.128 4.128 5 C -0.080 4.080 6 C 0.062 3.938 7 H 0.124 0.876 8 N -0.294 5.294 9 C -0.069 4.069 10 C 0.229 3.771 11 O -0.505 6.505 12 N -0.209 5.209 13 C -0.461 4.461 14 H 0.098 0.902 15 C -0.212 4.212 16 N -0.561 5.561 17 Si 0.815 3.185 18 H -0.197 1.197 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.115 4.115 22 C -0.103 4.103 23 C -0.157 4.157 24 C 0.082 3.918 25 F -0.114 7.114 26 C -0.161 4.161 27 C -0.032 4.032 28 Cl -0.014 7.014 29 C -0.123 4.123 30 C -0.150 4.150 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.159 0.841 35 H 0.146 0.854 36 H 0.171 0.829 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.159 0.841 42 H 0.177 0.823 43 H 0.181 0.819 44 H 0.133 0.867 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.843 9.138 15.008 24.340 hybrid contribution 1.553 -0.505 0.466 1.699 sum -15.290 8.634 15.474 23.405 Atomic orbital electron populations 1.20818 0.89475 1.03493 1.02997 1.20249 0.97435 0.92918 0.98828 1.21232 0.93757 0.98436 1.01124 1.21141 0.94760 0.97266 0.99681 1.19470 0.92991 0.94039 1.01517 1.19456 0.91932 0.96761 0.85646 0.87648 1.60321 1.18631 1.05647 1.44769 1.21572 0.89665 0.97832 0.97864 1.20666 0.82257 0.88866 0.85295 1.90497 1.55251 1.40616 1.64177 1.41912 1.11346 1.24422 1.43207 1.19662 0.97173 1.04336 1.24920 0.90165 1.26025 0.95431 1.00346 0.99430 1.69673 1.07532 1.33235 1.45706 0.84951 0.77529 0.77890 0.78134 1.19746 1.19637 1.19616 1.20606 1.00476 0.92779 0.97604 1.20902 0.97355 0.96189 0.95833 1.21405 1.00812 1.00173 0.93312 1.17535 1.00047 0.93775 0.80398 1.91525 1.86646 1.95407 1.37863 1.21114 1.02014 0.97022 0.95907 1.20427 1.02079 0.86726 0.93930 1.98375 1.92999 1.19703 1.90372 1.20995 0.94663 0.97648 0.98990 1.21221 0.93823 0.98577 1.01413 0.90307 0.90601 0.91112 0.84141 0.85390 0.82912 0.87744 0.91769 0.77043 0.91331 0.84123 0.82306 0.81876 0.86700 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.23 0.71 -0.75 16 2 C -0.09 -1.82 5.88 -19.87 -0.12 -1.94 16 3 C -0.13 -2.47 9.70 22.27 0.22 -2.25 16 4 C -0.11 -2.40 9.24 22.27 0.21 -2.19 16 5 C -0.08 -1.95 4.94 -19.87 -0.10 -2.05 16 6 C 0.17 4.28 1.97 43.42 0.09 4.37 16 7 H 0.11 2.57 6.64 -2.38 -0.02 2.55 16 8 N -0.66 -20.42 5.30 -503.39 -2.67 -23.09 16 9 C 0.06 2.13 5.93 85.56 0.51 2.64 16 10 C 0.44 20.60 7.82 87.66 0.69 21.29 16 11 O -0.62 -33.41 15.78 -3.07 -0.05 -33.46 16 12 N -0.57 -29.02 5.29 -306.99 -1.62 -30.64 16 13 C -0.33 -18.64 9.68 84.04 0.81 -17.83 16 14 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 15 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 16 N -0.92 -49.55 13.05 21.66 0.28 -49.26 16 17 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 21 C -0.11 -2.53 4.48 -19.84 -0.09 -2.62 16 22 C -0.08 -1.87 9.18 22.26 0.20 -1.66 16 23 C -0.14 -2.78 10.03 22.32 0.22 -2.55 16 24 C 0.10 2.08 7.30 22.37 0.16 2.24 16 25 F -0.14 -2.86 17.27 44.97 0.78 -2.08 16 26 C -0.14 -2.70 9.81 22.33 0.22 -2.48 16 27 C 0.00 -0.09 6.31 22.32 0.14 0.06 16 28 Cl -0.04 -0.81 25.72 -2.72 -0.07 -0.88 16 29 C -0.10 -2.60 9.31 22.27 0.21 -2.39 16 30 C -0.13 -2.88 9.70 22.27 0.22 -2.67 16 31 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 33 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 34 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.13 2.47 6.83 -2.91 -0.02 2.45 16 36 H 0.35 10.87 4.94 -89.70 -0.44 10.42 16 37 H 0.10 3.26 8.07 -2.39 -0.02 3.24 16 38 H 0.06 1.97 7.72 -2.39 -0.02 1.95 16 39 H 0.40 19.20 7.90 -92.71 -0.73 18.46 16 40 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 41 H 0.14 3.16 6.00 -2.91 -0.02 3.15 16 42 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.11 2.90 7.06 -2.91 -0.02 2.88 16 45 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -66.08 397.24 3.33 -62.75 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: -0.11 Total: 42.90 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 4.77 Total: -10.98 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -4.01 Total: -103.00 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.05 Total: -33.46 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.07 Total: -0.88 kcal Total: -66.08 3.33 -62.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084148706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.644 kcal (2) G-P(sol) polarization free energy of solvation -66.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds