Wall clock time and date at job start Tue Mar 31 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38232 * 119.99697 * 2 1 4 4 C 1.38236 * 119.99859 * 179.97438 * 3 2 1 5 5 C 1.38234 * 119.99836 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99928 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47205 * 20.00249 * 6 5 4 8 8 N 1.46905 * 109.46943 * 139.99956 * 6 5 4 9 9 C 1.46903 * 110.99943 * 200.61580 * 8 6 5 10 10 C 1.50698 * 109.47037 * 179.97438 * 9 8 6 11 11 O 1.21296 * 119.99887 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99883 * 180.02562 * 10 9 8 13 13 C 1.37097 * 119.99924 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99925 * 0.02562 * 13 12 10 15 15 C 1.38947 * 120.00259 * 179.97438 * 13 12 10 16 16 N 1.31422 * 119.99828 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00501 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46715 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47002 * 119.99730 * 17 15 13 20 20 H 1.48496 * 109.46861 * 240.00125 * 17 15 13 21 21 C 1.50697 * 109.47572 * 260.00036 * 6 5 4 22 22 C 1.38254 * 119.98058 * 266.91995 * 21 6 5 23 23 C 1.38180 * 120.03551 * 180.29520 * 22 21 6 24 24 C 1.38493 * 120.00144 * 359.44778 * 23 22 21 25 25 F 1.35099 * 120.01919 * 180.25377 * 24 23 22 26 26 C 1.38417 * 119.96022 * 0.27285 * 24 23 22 27 27 C 1.38331 * 119.96023 * 0.02562 * 26 24 23 28 28 Cl 1.73606 * 119.99694 * 179.97438 * 27 26 24 29 29 C 1.38234 * 120.00090 * 0.25441 * 5 4 3 30 30 C 1.38232 * 120.00044 * 359.46545 * 29 5 4 31 31 H 1.08993 * 109.47072 * 90.00339 * 1 2 3 32 32 H 1.09004 * 109.47285 * 210.00326 * 1 2 3 33 33 H 1.09003 * 109.46871 * 330.00069 * 1 2 3 34 34 H 1.08002 * 120.00451 * 359.97438 * 3 2 1 35 35 H 1.08002 * 120.00052 * 179.97438 * 4 3 2 36 36 H 1.00901 * 111.00188 * 76.66362 * 8 6 5 37 37 H 1.08997 * 109.47423 * 300.00075 * 9 8 6 38 38 H 1.09006 * 109.46792 * 60.00135 * 9 8 6 39 39 H 0.96999 * 119.99889 * 0.02562 * 12 10 9 40 40 H 0.97000 * 119.99735 * 180.02562 * 16 15 13 41 41 H 1.07994 * 119.98062 * 0.04288 * 22 21 6 42 42 H 1.08004 * 119.99835 * 179.72507 * 23 22 21 43 43 H 1.07999 * 120.01704 * 179.97438 * 26 24 23 44 44 H 1.08005 * 119.99973 * 179.73167 * 29 5 4 45 45 H 1.08000 * 120.00193 * 180.27548 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0001 0.0005 7 1 6.1420 0.9657 0.3520 8 7 6.2683 -1.0609 0.8908 9 6 7.6540 -0.8030 1.3048 10 6 8.1205 -1.9094 2.2155 11 8 7.3723 -2.8231 2.4920 12 7 9.3689 -1.8835 2.7226 13 6 9.7934 -2.8903 3.5506 14 1 9.1276 -3.7043 3.7963 15 6 11.0807 -2.8639 4.0730 16 7 11.8915 -1.8741 3.7730 17 14 11.6594 -4.2361 5.2008 18 1 10.5652 -5.2239 5.3803 19 1 12.8391 -4.9075 4.5984 20 1 12.0337 -3.6674 6.5205 21 6 6.2811 -0.2466 -1.3986 22 6 6.5721 -1.5336 -1.8113 23 6 7.0387 -1.7605 -3.0920 24 6 7.2042 -0.6996 -3.9668 25 9 7.6555 -0.9216 -5.2207 26 6 6.9073 0.5883 -3.5554 27 6 6.4462 0.8142 -2.2710 28 17 6.0742 2.4292 -1.7539 29 6 3.5805 -1.1971 -0.0053 30 6 2.1982 -1.1972 0.0000 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6581 2.1325 -0.0004 35 1 4.1205 2.1325 0.0001 36 1 6.1840 -1.9667 0.4544 37 1 8.2948 -0.7624 0.4240 38 1 7.7038 0.1484 1.8345 39 1 9.9670 -1.1525 2.5016 40 1 12.7902 -1.8560 4.1374 41 1 6.4386 -2.3617 -1.1310 42 1 7.2701 -2.7656 -3.4123 43 1 7.0364 1.4163 -4.2367 44 1 4.1206 -2.1324 -0.0097 45 1 1.6582 -2.1325 -0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084148707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:24 Heat of formation + Delta-G solvation = -34.603841 kcal Electronic energy + Delta-G solvation = -31124.979625 eV Core-core repulsion = 26661.421080 eV Total energy + Delta-G solvation = -4463.558545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.109 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.20468 -40.46222 -39.00313 -38.23020 -36.79179 -36.03788 -33.95628 -32.75194 -31.31765 -31.25257 -30.91647 -30.80694 -28.17767 -26.36825 -24.70296 -24.12179 -23.04902 -22.57618 -21.87108 -20.37633 -19.34823 -18.29021 -17.92688 -16.95498 -16.80450 -16.51206 -15.91619 -15.63109 -15.41056 -15.26030 -15.02018 -14.60109 -14.49180 -14.17942 -14.10838 -13.91541 -13.84617 -13.68641 -13.46466 -13.26433 -13.12252 -12.75468 -12.41825 -12.28088 -12.13453 -11.86892 -11.75505 -11.60654 -11.53830 -11.42192 -11.29588 -11.09562 -11.06660 -10.76418 -10.35715 -10.24327 -9.54094 -9.31587 -8.91854 -8.86256 -8.58363 -8.49753 -8.20618 -7.98578 -6.43542 -3.84444 0.65154 0.73951 1.33472 1.45163 1.73160 3.09278 3.15111 3.26015 3.32975 3.68677 3.87217 3.92137 4.00474 4.24023 4.34930 4.49242 4.58714 4.74648 4.79788 4.86490 4.97850 5.03780 5.07785 5.13578 5.18693 5.24266 5.37558 5.43410 5.48928 5.55543 5.57640 5.68048 5.71903 5.74692 5.79075 5.90847 5.92831 6.03956 6.09703 6.21831 6.38397 6.41813 6.58551 6.61343 7.00175 7.08117 7.46639 7.53797 8.03982 8.58463 9.15771 9.51800 10.02538 10.74129 Molecular weight = 376.11amu Principal moments of inertia in cm(-1) A = 0.007731 B = 0.002774 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3621.115896 B =10091.469794 C =12119.205345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.123 4.123 4 C -0.103 4.103 5 C -0.065 4.065 6 C 0.164 3.836 7 H 0.104 0.896 8 N -0.650 5.650 9 C 0.047 3.953 10 C 0.442 3.558 11 O -0.583 6.583 12 N -0.562 5.562 13 C -0.299 4.299 14 H 0.104 0.896 15 C 0.022 3.978 16 N -0.901 5.901 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.281 1.281 21 C -0.106 4.106 22 C -0.076 4.076 23 C -0.139 4.139 24 C 0.108 3.892 25 F -0.134 7.134 26 C -0.145 4.145 27 C 0.001 3.999 28 Cl -0.052 7.052 29 C -0.087 4.087 30 C -0.122 4.122 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.349 0.651 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.122 0.878 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.543 8.280 -15.381 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.121 4.121 5 C -0.066 4.066 6 C 0.053 3.947 7 H 0.122 0.878 8 N -0.283 5.283 9 C -0.086 4.086 10 C 0.227 3.773 11 O -0.467 6.467 12 N -0.198 5.198 13 C -0.428 4.428 14 H 0.122 0.878 15 C -0.179 4.179 16 N -0.542 5.542 17 Si 0.756 3.244 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.109 4.109 22 C -0.094 4.094 23 C -0.158 4.158 24 C 0.089 3.911 25 F -0.112 7.112 26 C -0.164 4.164 27 C -0.026 4.026 28 Cl -0.023 7.023 29 C -0.105 4.105 30 C -0.140 4.140 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.172 0.828 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.226 0.774 40 H 0.081 0.919 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.140 0.860 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.122 8.079 -14.530 23.158 hybrid contribution 1.472 -0.219 -0.603 1.605 sum -14.651 7.860 -15.132 22.481 Atomic orbital electron populations 1.20773 0.91525 1.02639 1.02017 1.19886 0.95844 0.93308 1.00024 1.20911 0.93949 0.97350 1.01904 1.20980 0.94108 0.97353 0.99709 1.19435 0.93234 0.93519 1.00387 1.19542 0.91653 0.97909 0.85595 0.87768 1.60341 1.21135 1.04596 1.42248 1.21762 0.88536 0.99882 0.98397 1.19706 0.83343 0.88435 0.85827 1.90528 1.54683 1.37768 1.63765 1.41858 1.11419 1.23871 1.42681 1.19746 0.97520 1.02844 1.22702 0.87830 1.25269 0.95909 0.98192 0.98560 1.69625 1.07965 1.31423 1.45177 0.85808 0.78682 0.80515 0.79400 1.19186 1.20770 1.20725 1.20689 0.99962 0.92332 0.97932 1.20885 0.96778 0.96319 0.95459 1.21241 1.01494 0.99335 0.93697 1.17441 0.99806 0.93467 0.80428 1.91528 1.86566 1.95388 1.37732 1.20930 1.02905 0.96648 0.95959 1.20389 1.01918 0.86547 0.93773 1.98376 1.92739 1.20662 1.90499 1.20915 0.93884 0.97782 0.97949 1.20985 0.94114 0.97425 1.01436 0.91458 0.91636 0.91734 0.86359 0.86229 0.82762 0.93554 0.89241 0.77443 0.91898 0.83772 0.83778 0.83640 0.86010 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.09 -0.95 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 4 C -0.10 -1.18 9.18 -39.58 -0.36 -1.54 16 5 C -0.07 -0.81 4.94 -104.62 -0.52 -1.33 16 6 C 0.16 2.08 1.96 -70.01 -0.14 1.94 16 7 H 0.10 1.31 6.64 -51.93 -0.34 0.97 16 8 N -0.65 -10.03 5.28 -110.45 -0.58 -10.61 16 9 C 0.05 0.80 5.96 -4.98 -0.03 0.77 16 10 C 0.44 10.12 7.82 -10.99 -0.09 10.03 16 11 O -0.58 -15.31 15.78 5.54 0.09 -15.23 16 12 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 13 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 14 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 15 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 16 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 17 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 21 C -0.11 -1.24 4.56 -104.58 -0.48 -1.71 16 22 C -0.08 -0.85 9.25 -39.60 -0.37 -1.22 16 23 C -0.14 -1.44 10.03 -39.51 -0.40 -1.84 16 24 C 0.11 1.16 7.30 -39.42 -0.29 0.88 16 25 F -0.13 -1.49 17.27 2.25 0.04 -1.45 16 26 C -0.14 -1.49 9.81 -39.48 -0.39 -1.88 16 27 C 0.00 0.01 6.31 -39.51 -0.25 -0.24 16 28 Cl -0.05 -0.52 25.65 -51.86 -1.33 -1.85 16 29 C -0.09 -1.08 9.31 -39.58 -0.37 -1.45 16 30 C -0.12 -1.36 9.70 -39.58 -0.38 -1.75 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.24 6.80 -52.49 -0.36 0.88 16 36 H 0.35 5.32 4.96 -39.29 -0.19 5.13 16 37 H 0.05 0.73 7.83 -51.93 -0.41 0.32 16 38 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 39 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.14 1.58 5.96 -52.49 -0.31 1.27 16 42 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 43 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 44 H 0.12 1.48 7.12 -52.48 -0.37 1.10 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 397.38 15.07 5.99 5.99 Total: -1.00 -30.91 397.38 -10.28 -41.19 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -5.19 Total: 14.71 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -4.93 Total: -10.96 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.08 Total: -48.27 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.09 Total: -15.23 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.33 Total: -1.85 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.91 -10.28 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084148707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.587 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds