Wall clock time and date at job start Tue Mar 31 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38232 * 119.99697 * 2 1 4 4 C 1.38236 * 119.99859 * 179.97438 * 3 2 1 5 5 C 1.38234 * 119.99836 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99928 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47205 * 20.00249 * 6 5 4 8 8 N 1.46905 * 109.46943 * 139.99956 * 6 5 4 9 9 C 1.46903 * 110.99943 * 200.61580 * 8 6 5 10 10 C 1.50698 * 109.47037 * 179.97438 * 9 8 6 11 11 O 1.21296 * 119.99887 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99883 * 180.02562 * 10 9 8 13 13 C 1.37097 * 119.99924 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99925 * 0.02562 * 13 12 10 15 15 C 1.38947 * 120.00259 * 179.97438 * 13 12 10 16 16 N 1.31422 * 119.99828 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00501 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46715 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47002 * 119.99730 * 17 15 13 20 20 H 1.48496 * 109.46861 * 240.00125 * 17 15 13 21 21 C 1.50697 * 109.47572 * 260.00036 * 6 5 4 22 22 C 1.38254 * 119.98058 * 266.91995 * 21 6 5 23 23 C 1.38180 * 120.03551 * 180.29520 * 22 21 6 24 24 C 1.38493 * 120.00144 * 359.44778 * 23 22 21 25 25 F 1.35099 * 120.01919 * 180.25377 * 24 23 22 26 26 C 1.38417 * 119.96022 * 0.27285 * 24 23 22 27 27 C 1.38331 * 119.96023 * 0.02562 * 26 24 23 28 28 Cl 1.73606 * 119.99694 * 179.97438 * 27 26 24 29 29 C 1.38234 * 120.00090 * 0.25441 * 5 4 3 30 30 C 1.38232 * 120.00044 * 359.46545 * 29 5 4 31 31 H 1.08993 * 109.47072 * 90.00339 * 1 2 3 32 32 H 1.09004 * 109.47285 * 210.00326 * 1 2 3 33 33 H 1.09003 * 109.46871 * 330.00069 * 1 2 3 34 34 H 1.08002 * 120.00451 * 359.97438 * 3 2 1 35 35 H 1.08002 * 120.00052 * 179.97438 * 4 3 2 36 36 H 1.00901 * 111.00188 * 76.66362 * 8 6 5 37 37 H 1.08997 * 109.47423 * 300.00075 * 9 8 6 38 38 H 1.09006 * 109.46792 * 60.00135 * 9 8 6 39 39 H 0.96999 * 119.99889 * 0.02562 * 12 10 9 40 40 H 0.97000 * 119.99735 * 180.02562 * 16 15 13 41 41 H 1.07994 * 119.98062 * 0.04288 * 22 21 6 42 42 H 1.08004 * 119.99835 * 179.72507 * 23 22 21 43 43 H 1.07999 * 120.01704 * 179.97438 * 26 24 23 44 44 H 1.08005 * 119.99973 * 179.73167 * 29 5 4 45 45 H 1.08000 * 120.00193 * 180.27548 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0001 0.0005 7 1 6.1420 0.9657 0.3520 8 7 6.2683 -1.0609 0.8908 9 6 7.6540 -0.8030 1.3048 10 6 8.1205 -1.9094 2.2155 11 8 7.3723 -2.8231 2.4920 12 7 9.3689 -1.8835 2.7226 13 6 9.7934 -2.8903 3.5506 14 1 9.1276 -3.7043 3.7963 15 6 11.0807 -2.8639 4.0730 16 7 11.8915 -1.8741 3.7730 17 14 11.6594 -4.2361 5.2008 18 1 10.5652 -5.2239 5.3803 19 1 12.8391 -4.9075 4.5984 20 1 12.0337 -3.6674 6.5205 21 6 6.2811 -0.2466 -1.3986 22 6 6.5721 -1.5336 -1.8113 23 6 7.0387 -1.7605 -3.0920 24 6 7.2042 -0.6996 -3.9668 25 9 7.6555 -0.9216 -5.2207 26 6 6.9073 0.5883 -3.5554 27 6 6.4462 0.8142 -2.2710 28 17 6.0742 2.4292 -1.7539 29 6 3.5805 -1.1971 -0.0053 30 6 2.1982 -1.1972 0.0000 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6581 2.1325 -0.0004 35 1 4.1205 2.1325 0.0001 36 1 6.1840 -1.9667 0.4544 37 1 8.2948 -0.7624 0.4240 38 1 7.7038 0.1484 1.8345 39 1 9.9670 -1.1525 2.5016 40 1 12.7902 -1.8560 4.1374 41 1 6.4386 -2.3617 -1.1310 42 1 7.2701 -2.7656 -3.4123 43 1 7.0364 1.4163 -4.2367 44 1 4.1206 -2.1324 -0.0097 45 1 1.6582 -2.1325 -0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084148707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:23 Heat of formation + Delta-G solvation = -50.861569 kcal Electronic energy + Delta-G solvation = -31125.684613 eV Core-core repulsion = 26661.421080 eV Total energy + Delta-G solvation = -4464.263533 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.109 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.05897 -41.40435 -40.02773 -39.82091 -37.63352 -37.14982 -35.91038 -33.76386 -33.22525 -32.12674 -31.84101 -31.73463 -29.19266 -27.76919 -26.02611 -25.33805 -23.99760 -23.44446 -22.75690 -21.29008 -21.10610 -19.93312 -19.14628 -18.16007 -17.85777 -17.40791 -17.15094 -16.77054 -16.40928 -16.33512 -16.18928 -15.89532 -15.81415 -15.72193 -15.22612 -14.92414 -14.70281 -14.66928 -14.41597 -14.25421 -14.22605 -13.97598 -13.63139 -13.45324 -13.30152 -13.09642 -12.88660 -12.85049 -12.62886 -12.49189 -12.39555 -12.30217 -12.13086 -12.11243 -11.93550 -11.60489 -11.50962 -10.37519 -10.14596 -10.01211 -9.77912 -9.73925 -9.55274 -9.31246 -8.46304 -5.94788 -0.20586 -0.09654 0.47544 0.58557 0.90463 1.36740 1.42431 1.56369 2.04429 2.24316 2.28463 2.72355 2.92686 3.08285 3.21055 3.47163 3.51305 3.56413 3.78786 3.89709 3.95386 4.06155 4.15676 4.21847 4.26701 4.30115 4.34778 4.44570 4.56292 4.62345 4.64478 4.71328 4.75362 4.88161 4.91719 4.93871 5.00010 5.06499 5.24223 5.32410 5.41973 5.54040 5.55260 5.65538 5.76870 5.88251 6.05051 6.18720 6.25430 6.59642 7.12898 7.56071 8.10619 8.71286 Molecular weight = 376.11amu Principal moments of inertia in cm(-1) A = 0.007731 B = 0.002774 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3621.115896 B =10091.469794 C =12119.205345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.128 4.128 4 C -0.110 4.110 5 C -0.079 4.079 6 C 0.172 3.828 7 H 0.106 0.894 8 N -0.661 5.661 9 C 0.063 3.937 10 C 0.442 3.558 11 O -0.619 6.619 12 N -0.572 5.572 13 C -0.330 4.330 14 H 0.080 0.920 15 C -0.013 4.013 16 N -0.921 5.921 17 Si 0.991 3.009 18 H -0.272 1.272 19 H -0.271 1.271 20 H -0.272 1.272 21 C -0.112 4.112 22 C -0.084 4.084 23 C -0.138 4.138 24 C 0.102 3.898 25 F -0.136 7.136 26 C -0.141 4.141 27 C -0.004 4.004 28 Cl -0.044 7.044 29 C -0.104 4.104 30 C -0.133 4.133 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.141 0.859 35 H 0.128 0.872 36 H 0.348 0.652 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.142 0.858 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.115 0.885 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.171 9.216 -16.028 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.129 4.129 5 C -0.080 4.080 6 C 0.062 3.938 7 H 0.123 0.877 8 N -0.294 5.294 9 C -0.069 4.069 10 C 0.229 3.771 11 O -0.505 6.505 12 N -0.209 5.209 13 C -0.460 4.460 14 H 0.098 0.902 15 C -0.213 4.213 16 N -0.562 5.562 17 Si 0.815 3.185 18 H -0.197 1.197 19 H -0.196 1.196 20 H -0.197 1.197 21 C -0.114 4.114 22 C -0.103 4.103 23 C -0.157 4.157 24 C 0.082 3.918 25 F -0.114 7.114 26 C -0.161 4.161 27 C -0.032 4.032 28 Cl -0.015 7.015 29 C -0.123 4.123 30 C -0.151 4.151 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.171 0.829 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.159 0.841 42 H 0.177 0.823 43 H 0.181 0.819 44 H 0.133 0.867 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.750 9.043 -15.196 24.357 hybrid contribution 1.571 -0.481 -0.450 1.704 sum -15.179 8.562 -15.646 23.420 Atomic orbital electron populations 1.20818 0.89481 1.03486 1.02992 1.20247 0.97432 0.92919 0.98844 1.21229 0.93762 0.98427 1.01143 1.21143 0.94755 0.97265 0.99690 1.19473 0.93007 0.94023 1.01490 1.19451 0.91943 0.96711 0.85697 0.87665 1.60323 1.19875 1.05479 1.43743 1.21578 0.89825 0.97735 0.97807 1.20670 0.82234 0.88967 0.85196 1.90499 1.55470 1.39632 1.64942 1.41919 1.12289 1.23672 1.43037 1.19692 0.98078 1.03532 1.24675 0.90188 1.26028 0.95481 1.00317 0.99440 1.69684 1.08323 1.32475 1.45674 0.84891 0.78089 0.77706 0.77796 1.19679 1.19640 1.19743 1.20595 1.00472 0.92801 0.97575 1.20904 0.97334 0.96204 0.95858 1.21405 1.00830 1.00173 0.93277 1.17536 1.00028 0.93800 0.80390 1.91524 1.86631 1.95425 1.37855 1.21115 1.01974 0.97053 0.95917 1.20422 1.02039 0.86765 0.93930 1.98376 1.92690 1.19931 1.90460 1.20996 0.94645 0.97654 0.98957 1.21223 0.93835 0.98569 1.01434 0.90307 0.91119 0.90608 0.84152 0.85394 0.82887 0.91741 0.87735 0.77039 0.91346 0.84089 0.82289 0.81875 0.86708 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.01 71.24 0.71 -0.76 16 2 C -0.09 -1.83 5.88 -19.87 -0.12 -1.95 16 3 C -0.13 -2.48 9.70 22.27 0.22 -2.26 16 4 C -0.11 -2.40 9.18 22.27 0.20 -2.20 16 5 C -0.08 -1.95 4.94 -19.87 -0.10 -2.05 16 6 C 0.17 4.28 1.96 43.42 0.08 4.37 16 7 H 0.11 2.56 6.64 -2.39 -0.02 2.54 16 8 N -0.66 -20.42 5.28 -503.37 -2.66 -23.08 16 9 C 0.06 2.13 5.96 85.56 0.51 2.64 16 10 C 0.44 20.60 7.82 87.66 0.69 21.29 16 11 O -0.62 -33.42 15.78 -3.08 -0.05 -33.47 16 12 N -0.57 -29.02 5.29 -306.99 -1.62 -30.64 16 13 C -0.33 -18.57 9.68 84.04 0.81 -17.76 16 14 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 15 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 16 N -0.92 -49.51 13.05 21.66 0.28 -49.23 16 17 Si 0.99 42.75 29.55 68.60 2.03 44.77 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 C -0.11 -2.53 4.56 -19.84 -0.09 -2.62 16 22 C -0.08 -1.86 9.25 22.26 0.21 -1.66 16 23 C -0.14 -2.76 10.03 22.32 0.22 -2.54 16 24 C 0.10 2.07 7.30 22.37 0.16 2.23 16 25 F -0.14 -2.85 17.27 44.97 0.78 -2.07 16 26 C -0.14 -2.69 9.81 22.33 0.22 -2.47 16 27 C 0.00 -0.08 6.31 22.31 0.14 0.06 16 28 Cl -0.04 -0.81 25.65 -2.72 -0.07 -0.88 16 29 C -0.10 -2.59 9.31 22.27 0.21 -2.39 16 30 C -0.13 -2.90 9.70 22.27 0.22 -2.68 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.86 8.09 -2.38 -0.02 0.85 16 33 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 34 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.13 2.48 6.80 -2.91 -0.02 2.46 16 36 H 0.35 10.86 4.96 -89.69 -0.44 10.41 16 37 H 0.06 1.97 7.83 -2.39 -0.02 1.95 16 38 H 0.10 3.25 8.07 -2.38 -0.02 3.24 16 39 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 40 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 41 H 0.14 3.17 5.96 -2.91 -0.02 3.15 16 42 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 43 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 44 H 0.11 2.91 7.12 -2.91 -0.02 2.89 16 45 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -66.15 397.38 3.34 -62.81 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -0.11 Total: 42.76 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 4.77 Total: -10.96 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -4.00 Total: -102.96 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.05 Total: -33.47 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.07 Total: -0.88 kcal Total: -66.15 3.34 -62.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084148707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.947 kcal (2) G-P(sol) polarization free energy of solvation -66.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds