Wall clock time and date at job start Tue Mar 31 2020 06:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35610 * 124.77916 * 2 1 4 4 C 1.36662 * 109.69877 * 180.13254 * 3 2 1 5 5 C 1.46386 * 126.78830 * 179.86742 * 4 3 2 6 6 C 1.35453 * 119.99584 * 359.67898 * 5 4 3 7 7 C 1.41503 * 119.99499 * 180.02562 * 6 5 4 8 8 O 1.21782 * 119.99897 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99457 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99681 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47169 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96224 * 270.02412 * 11 10 9 13 13 C 1.38279 * 120.13490 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06774 * 359.77134 * 13 12 11 15 15 C 1.38852 * 119.93464 * 0.50144 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.74702 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47010 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46908 * 119.99967 * 21 19 17 24 24 H 1.48504 * 109.47373 * 240.00300 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99807 * 11 10 9 26 26 C 1.47513 * 106.42603 * 359.59962 * 4 3 2 27 27 C 1.39252 * 133.96835 * 180.24009 * 26 4 3 28 28 C 1.37778 * 119.67681 * 179.97438 * 27 26 4 29 29 C 1.38741 * 120.29753 * 0.08553 * 28 27 26 30 30 C 1.37779 * 120.62964 * 359.93386 * 29 28 27 31 31 C 1.37987 * 124.78464 * 179.67761 * 2 1 3 32 32 H 1.08998 * 109.46718 * 270.32304 * 1 2 3 33 33 H 1.08994 * 109.47033 * 30.32420 * 1 2 3 34 34 H 1.08999 * 109.46817 * 150.32287 * 1 2 3 35 35 H 1.07999 * 125.15481 * 0.02562 * 3 2 1 36 36 H 1.08001 * 120.00010 * 179.68348 * 5 4 3 37 37 H 1.08001 * 120.00407 * 0.02562 * 6 5 4 38 38 H 0.96993 * 120.00552 * 0.02562 * 9 7 6 39 39 H 1.09004 * 109.46757 * 59.99773 * 10 9 7 40 40 H 1.08998 * 109.46890 * 300.00426 * 10 9 7 41 41 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 42 42 H 1.07999 * 119.96467 * 180.02562 * 13 12 11 43 43 H 1.08006 * 120.03757 * 180.27571 * 14 13 12 44 44 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.03547 * 0.04988 * 25 11 10 46 46 H 1.08007 * 120.15960 * 359.97438 * 27 26 4 47 47 H 1.07998 * 119.84934 * 180.02562 * 28 27 26 48 48 H 1.07998 * 119.68689 * 179.97438 * 29 28 27 49 49 H 1.07999 * 120.03458 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2385 1.1138 0.0000 4 6 3.5581 0.7583 -0.0030 5 6 4.7095 1.6622 -0.0067 6 6 4.5178 3.0030 -0.0140 7 6 5.6309 3.8768 -0.0181 8 8 6.7611 3.4231 -0.0146 9 7 5.4402 5.2109 -0.0249 10 6 6.5926 6.1156 -0.0286 11 6 6.1104 7.5433 -0.0354 12 6 5.8893 8.1921 -1.2369 13 6 5.4464 9.5020 -1.2473 14 6 5.2187 10.1650 -0.0572 15 6 5.4451 9.5184 1.1505 16 8 5.2272 10.1690 2.3218 17 6 4.9082 11.4768 2.2454 18 1 4.7562 11.9401 1.2818 19 6 4.7751 12.2267 3.4041 20 7 4.9606 11.6624 4.5778 21 14 4.3337 14.0387 3.2982 22 1 4.1803 14.4284 1.8734 23 1 3.0568 14.2800 4.0170 24 1 5.4124 14.8482 3.9198 25 6 5.8892 8.2022 1.1576 26 6 3.5928 -0.7164 0.0049 27 6 4.6174 -1.6594 0.0104 28 6 4.3088 -3.0021 0.0180 29 6 2.9845 -3.4159 0.0183 30 6 1.9609 -2.4937 0.0125 31 6 2.2522 -1.1333 0.0064 32 1 -0.3633 0.0058 1.0277 33 1 -0.3633 0.8870 -0.5188 34 1 -0.3633 -0.8929 -0.5088 35 1 1.8680 2.1283 0.0004 36 1 5.7118 1.2599 -0.0037 37 1 3.5156 3.4053 -0.0167 38 1 4.5400 5.5722 -0.0266 39 1 7.1963 5.9313 -0.9173 40 1 7.1950 5.9401 0.8626 41 1 6.0631 7.6746 -2.1688 42 1 5.2743 10.0058 -2.1870 43 1 4.8685 11.1867 -0.0659 44 1 4.8678 12.1872 5.3883 45 1 6.0623 7.6952 2.0954 46 1 5.6491 -1.3396 0.0088 47 1 5.1013 -3.7358 0.0227 48 1 2.7538 -4.4709 0.0238 49 1 0.9335 -2.8265 0.0132 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084314227.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:53 Heat of formation + Delta-G solvation = 41.203444 kcal Electronic energy + Delta-G solvation = -30801.327741 eV Core-core repulsion = 26466.949601 eV Total energy + Delta-G solvation = -4334.378139 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.77147 -39.74880 -38.99378 -37.48304 -36.81166 -34.87916 -34.31153 -32.33848 -32.04120 -30.73336 -30.68840 -29.21479 -29.00710 -27.18932 -25.85528 -25.13215 -23.53539 -22.84970 -21.82362 -21.68999 -20.80097 -20.41210 -19.07144 -17.93112 -17.61050 -17.17410 -16.77408 -16.42490 -15.89186 -15.83746 -15.62343 -15.31480 -14.97509 -14.45681 -14.38915 -14.38349 -14.30777 -13.99270 -13.74283 -13.55340 -13.46741 -13.40543 -13.16990 -12.79947 -12.69323 -12.37263 -12.15128 -12.13230 -11.83319 -11.71932 -11.66703 -11.37598 -11.24561 -10.94655 -10.80014 -10.71724 -10.67483 -10.46335 -9.85882 -9.40069 -9.39358 -8.89726 -8.84890 -8.62051 -8.22556 -7.68771 -7.31929 -6.49033 -4.08526 0.47683 1.03828 1.32609 1.93769 2.28162 2.29313 2.58635 3.09053 3.11112 3.16547 3.48611 3.61422 3.68827 3.92529 4.18080 4.23504 4.31324 4.51689 4.58869 4.63971 4.74613 4.86494 4.92437 4.93886 4.98557 5.07782 5.09831 5.16072 5.26977 5.33896 5.37297 5.50118 5.56927 5.64378 5.79083 5.87099 5.96555 6.01417 6.08650 6.19340 6.23163 6.25946 6.27488 6.36901 6.43209 6.57204 6.62570 6.75043 6.81774 6.83300 7.00673 7.21154 7.28428 7.36486 7.69941 7.75906 7.95281 8.42219 8.96465 9.65538 10.68840 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.001364 C = 0.001307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.002993 B =20530.325888 C =21425.920153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.477 5.477 3 C 0.094 3.906 4 C -0.172 4.172 5 C 0.040 3.960 6 C -0.245 4.245 7 C 0.550 3.450 8 O -0.560 6.560 9 N -0.719 5.719 10 C 0.168 3.832 11 C -0.072 4.072 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.227 4.227 15 C 0.150 3.850 16 O -0.177 6.177 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.275 1.275 25 C -0.171 4.171 26 C -0.084 4.084 27 C -0.072 4.072 28 C -0.141 4.141 29 C -0.102 4.102 30 C -0.126 4.126 31 C 0.088 3.912 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.178 0.822 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.402 0.598 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.270 0.730 45 H 0.118 0.882 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 -25.915 -11.058 29.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.157 5.157 3 C -0.036 4.036 4 C -0.179 4.179 5 C 0.019 3.981 6 C -0.267 4.267 7 C 0.342 3.658 8 O -0.442 6.442 9 N -0.369 5.369 10 C 0.045 3.955 11 C -0.073 4.073 12 C -0.215 4.215 13 C -0.095 4.095 14 C -0.246 4.246 15 C 0.097 3.903 16 O -0.081 6.081 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.191 4.191 26 C -0.088 4.088 27 C -0.090 4.090 28 C -0.160 4.160 29 C -0.121 4.121 30 C -0.146 4.146 31 C -0.016 4.016 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.195 0.805 36 H 0.152 0.848 37 H 0.139 0.861 38 H 0.237 0.763 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.080 0.920 45 H 0.136 0.864 46 H 0.144 0.856 47 H 0.143 0.857 48 H 0.143 0.857 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.002 -26.209 -10.563 29.657 hybrid contribution -0.915 1.362 -0.048 1.641 sum -9.917 -24.848 -10.611 28.781 Atomic orbital electron populations 1.22059 0.76587 1.04627 1.03522 1.43615 1.06364 1.04383 1.61350 1.22233 0.90004 0.91391 0.99931 1.19095 0.92018 0.91140 1.15632 1.21599 0.96917 0.91624 0.87942 1.21697 0.98785 0.94086 1.12092 1.17002 0.89561 0.82444 0.76839 1.90814 1.25183 1.76830 1.51340 1.46039 1.10317 1.05666 1.74905 1.20124 0.87788 0.85125 1.02476 1.19303 1.00766 0.94148 0.93050 1.20488 1.08914 0.95726 0.96322 1.20742 0.97564 0.94243 0.96918 1.21236 1.09437 1.01837 0.92100 1.19329 0.92426 0.91919 0.86666 1.83983 1.75289 1.23961 1.24828 1.21372 1.48579 0.82205 0.94753 0.88997 1.25294 0.96789 1.00207 0.94193 1.70044 1.45330 1.36684 0.97499 0.85647 0.78393 0.80552 0.78829 1.19091 1.20147 1.20095 1.20096 1.07783 0.93624 0.97557 1.19050 0.92286 0.92458 1.04996 1.20554 0.98345 0.91883 0.98261 1.20953 0.96457 0.95414 1.03180 1.20813 0.92293 0.98885 1.00097 1.20021 0.99628 0.89028 1.05956 1.18263 0.89906 0.88219 1.05236 0.90772 0.89406 0.89833 0.80531 0.84769 0.86150 0.76335 0.91007 0.90911 0.87496 0.87321 0.85496 0.92018 0.86384 0.85562 0.85724 0.85659 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 10.98 59.85 0.66 0.92 16 2 N -0.48 -3.56 3.15 -121.47 -0.38 -3.94 16 3 C 0.09 0.75 10.67 -16.45 -0.18 0.57 16 4 C -0.17 -1.73 6.24 -103.41 -0.65 -2.38 16 5 C 0.04 0.44 9.68 -37.30 -0.36 0.08 16 6 C -0.24 -2.73 9.32 -39.33 -0.37 -3.10 16 7 C 0.55 7.91 7.56 -15.02 -0.11 7.80 16 8 O -0.56 -9.99 16.11 5.12 0.08 -9.91 16 9 N -0.72 -9.84 5.54 -64.44 -0.36 -10.19 16 10 C 0.17 2.56 5.80 -5.19 -0.03 2.53 16 11 C -0.07 -1.24 5.25 -104.65 -0.55 -1.78 16 12 C -0.20 -3.22 9.70 -39.53 -0.38 -3.60 16 13 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 14 C -0.23 -4.75 9.17 -39.40 -0.36 -5.11 16 15 C 0.15 3.52 6.65 -39.11 -0.26 3.26 16 16 O -0.18 -4.96 9.76 0.05 0.00 -4.96 16 17 C -0.39 -10.77 9.49 30.89 0.29 -10.48 16 18 H 0.09 2.33 5.21 -52.49 -0.27 2.05 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 21 Si 0.94 20.19 29.55 -169.99 -5.02 15.16 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 C -0.17 -3.48 9.65 -39.39 -0.38 -3.86 16 26 C -0.08 -0.87 6.36 -104.93 -0.67 -1.54 16 27 C -0.07 -0.66 10.09 -39.37 -0.40 -1.06 16 28 C -0.14 -1.08 10.03 -39.56 -0.40 -1.47 16 29 C -0.10 -0.71 10.01 -39.56 -0.40 -1.11 16 30 C -0.13 -0.94 9.91 -39.42 -0.39 -1.33 16 31 C 0.09 0.80 6.79 -83.96 -0.57 0.23 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.18 8.13 -51.93 -0.42 -0.25 16 34 H 0.08 0.21 8.02 -51.93 -0.42 -0.21 16 35 H 0.18 0.91 7.19 -52.49 -0.38 0.53 16 36 H 0.13 1.58 7.45 -52.49 -0.39 1.19 16 37 H 0.12 1.00 6.88 -52.49 -0.36 0.64 16 38 H 0.40 4.82 8.42 -40.82 -0.34 4.47 16 39 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 40 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 41 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.13 2.67 5.64 -52.48 -0.30 2.37 16 44 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 46 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 47 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 48 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 49 H 0.12 0.61 8.00 -52.49 -0.42 0.19 16 LS Contribution 423.84 15.07 6.39 6.39 Total: -1.00 -34.69 423.84 -10.76 -45.45 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.24 Total: 8.38 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -5.99 Total: -22.19 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.02 Total: -38.32 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.08 Total: -14.87 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -34.69 -10.76 -45.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084314227.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.649 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds