Wall clock time and date at job start Tue Mar 31 2020 06:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35610 * 124.77916 * 2 1 4 4 C 1.36662 * 109.69877 * 180.13254 * 3 2 1 5 5 C 1.46386 * 126.78830 * 179.86742 * 4 3 2 6 6 C 1.35453 * 119.99584 * 359.67898 * 5 4 3 7 7 C 1.41503 * 119.99499 * 180.02562 * 6 5 4 8 8 O 1.21782 * 119.99897 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99457 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99681 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47169 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96224 * 270.02412 * 11 10 9 13 13 C 1.38279 * 120.13490 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06774 * 359.77134 * 13 12 11 15 15 C 1.38852 * 119.93464 * 0.50144 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.74702 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47010 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46908 * 119.99967 * 21 19 17 24 24 H 1.48504 * 109.47373 * 240.00300 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99807 * 11 10 9 26 26 C 1.47513 * 106.42603 * 359.59962 * 4 3 2 27 27 C 1.39252 * 133.96835 * 180.24009 * 26 4 3 28 28 C 1.37778 * 119.67681 * 179.97438 * 27 26 4 29 29 C 1.38741 * 120.29753 * 0.08553 * 28 27 26 30 30 C 1.37779 * 120.62964 * 359.93386 * 29 28 27 31 31 C 1.37987 * 124.78464 * 179.67761 * 2 1 3 32 32 H 1.08998 * 109.46718 * 270.32304 * 1 2 3 33 33 H 1.08994 * 109.47033 * 30.32420 * 1 2 3 34 34 H 1.08999 * 109.46817 * 150.32287 * 1 2 3 35 35 H 1.07999 * 125.15481 * 0.02562 * 3 2 1 36 36 H 1.08001 * 120.00010 * 179.68348 * 5 4 3 37 37 H 1.08001 * 120.00407 * 0.02562 * 6 5 4 38 38 H 0.96993 * 120.00552 * 0.02562 * 9 7 6 39 39 H 1.09004 * 109.46757 * 59.99773 * 10 9 7 40 40 H 1.08998 * 109.46890 * 300.00426 * 10 9 7 41 41 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 42 42 H 1.07999 * 119.96467 * 180.02562 * 13 12 11 43 43 H 1.08006 * 120.03757 * 180.27571 * 14 13 12 44 44 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.03547 * 0.04988 * 25 11 10 46 46 H 1.08007 * 120.15960 * 359.97438 * 27 26 4 47 47 H 1.07998 * 119.84934 * 180.02562 * 28 27 26 48 48 H 1.07998 * 119.68689 * 179.97438 * 29 28 27 49 49 H 1.07999 * 120.03458 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2385 1.1138 0.0000 4 6 3.5581 0.7583 -0.0030 5 6 4.7095 1.6622 -0.0067 6 6 4.5178 3.0030 -0.0140 7 6 5.6309 3.8768 -0.0181 8 8 6.7611 3.4231 -0.0146 9 7 5.4402 5.2109 -0.0249 10 6 6.5926 6.1156 -0.0286 11 6 6.1104 7.5433 -0.0354 12 6 5.8893 8.1921 -1.2369 13 6 5.4464 9.5020 -1.2473 14 6 5.2187 10.1650 -0.0572 15 6 5.4451 9.5184 1.1505 16 8 5.2272 10.1690 2.3218 17 6 4.9082 11.4768 2.2454 18 1 4.7562 11.9401 1.2818 19 6 4.7751 12.2267 3.4041 20 7 4.9606 11.6624 4.5778 21 14 4.3337 14.0387 3.2982 22 1 4.1803 14.4284 1.8734 23 1 3.0568 14.2800 4.0170 24 1 5.4124 14.8482 3.9198 25 6 5.8892 8.2022 1.1576 26 6 3.5928 -0.7164 0.0049 27 6 4.6174 -1.6594 0.0104 28 6 4.3088 -3.0021 0.0180 29 6 2.9845 -3.4159 0.0183 30 6 1.9609 -2.4937 0.0125 31 6 2.2522 -1.1333 0.0064 32 1 -0.3633 0.0058 1.0277 33 1 -0.3633 0.8870 -0.5188 34 1 -0.3633 -0.8929 -0.5088 35 1 1.8680 2.1283 0.0004 36 1 5.7118 1.2599 -0.0037 37 1 3.5156 3.4053 -0.0167 38 1 4.5400 5.5722 -0.0266 39 1 7.1963 5.9313 -0.9173 40 1 7.1950 5.9401 0.8626 41 1 6.0631 7.6746 -2.1688 42 1 5.2743 10.0058 -2.1870 43 1 4.8685 11.1867 -0.0659 44 1 4.8678 12.1872 5.3883 45 1 6.0623 7.6952 2.0954 46 1 5.6491 -1.3396 0.0088 47 1 5.1013 -3.7358 0.0227 48 1 2.7538 -4.4709 0.0238 49 1 0.9335 -2.8265 0.0132 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084314227.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:51 Heat of formation + Delta-G solvation = 21.577671 kcal Electronic energy + Delta-G solvation = -30802.178778 eV Core-core repulsion = 26466.949601 eV Total energy + Delta-G solvation = -4335.229177 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.35787 -41.06238 -40.52901 -38.47812 -38.03701 -35.84946 -35.40186 -34.28226 -32.84921 -32.05256 -31.22191 -30.77236 -29.69029 -28.08630 -27.36381 -26.53179 -24.35292 -23.56170 -23.23895 -22.42787 -22.35254 -21.38340 -19.97954 -19.45623 -18.87097 -18.45997 -17.60987 -17.24281 -16.83850 -16.70041 -16.53861 -16.40512 -16.35012 -16.07482 -15.87834 -15.51418 -15.15624 -14.93302 -14.87921 -14.82374 -14.40522 -14.32259 -13.91298 -13.84849 -13.73910 -13.69158 -13.33483 -13.21508 -13.02423 -12.81363 -12.55565 -12.41367 -12.38652 -12.34387 -12.27024 -12.08032 -11.82781 -11.40774 -11.21468 -11.05942 -10.81091 -10.21021 -9.94859 -9.75108 -9.22134 -9.02971 -8.46662 -8.34037 -6.15287 -0.25458 0.34941 0.40047 0.69599 0.71029 1.36203 1.44144 1.54388 1.80217 1.81752 2.17654 2.42566 2.58672 2.88656 2.97658 3.17155 3.41462 3.69054 3.69481 3.76982 3.84448 4.05486 4.10172 4.19440 4.23009 4.30636 4.31730 4.42841 4.44313 4.47297 4.51705 4.54035 4.62042 4.71192 4.72966 4.75002 4.76904 4.85430 5.02548 5.03892 5.12516 5.26327 5.35552 5.37981 5.47878 5.57695 5.63146 5.63666 5.70945 5.71129 5.72904 5.78380 6.02165 6.17174 6.18118 6.27525 6.65647 6.98194 7.31892 7.78638 8.76677 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.001364 C = 0.001307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.002993 B =20530.325888 C =21425.920153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.474 5.474 3 C 0.113 3.887 4 C -0.210 4.210 5 C 0.055 3.945 6 C -0.259 4.259 7 C 0.549 3.451 8 O -0.603 6.603 9 N -0.713 5.713 10 C 0.174 3.826 11 C -0.058 4.058 12 C -0.168 4.168 13 C -0.068 4.068 14 C -0.234 4.234 15 C 0.113 3.887 16 O -0.233 6.233 17 C -0.412 4.412 18 H 0.104 0.896 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.019 2.981 22 H -0.249 1.249 23 H -0.269 1.269 24 H -0.271 1.271 25 C -0.181 4.181 26 C -0.111 4.111 27 C -0.100 4.100 28 C -0.142 4.142 29 C -0.107 4.107 30 C -0.126 4.126 31 C 0.068 3.932 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.208 0.792 36 H 0.115 0.885 37 H 0.153 0.847 38 H 0.412 0.588 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.121 0.879 44 H 0.272 0.728 45 H 0.106 0.894 46 H 0.122 0.878 47 H 0.143 0.857 48 H 0.153 0.847 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.748 -26.864 -14.103 32.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.153 5.153 3 C -0.018 4.018 4 C -0.217 4.217 5 C 0.033 3.967 6 C -0.281 4.281 7 C 0.343 3.657 8 O -0.488 6.488 9 N -0.363 5.363 10 C 0.050 3.950 11 C -0.058 4.058 12 C -0.187 4.187 13 C -0.086 4.086 14 C -0.253 4.253 15 C 0.063 3.937 16 O -0.140 6.140 17 C -0.488 4.488 18 H 0.121 0.879 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.172 1.172 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.201 4.201 26 C -0.115 4.115 27 C -0.119 4.119 28 C -0.161 4.161 29 C -0.126 4.126 30 C -0.146 4.146 31 C -0.036 4.036 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.225 0.775 36 H 0.133 0.867 37 H 0.170 0.830 38 H 0.249 0.751 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.165 0.835 42 H 0.167 0.833 43 H 0.139 0.861 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.140 0.860 47 H 0.160 0.840 48 H 0.171 0.829 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.356 -27.199 -13.666 32.488 hybrid contribution -0.186 1.263 0.657 1.436 sum -11.542 -25.936 -13.008 31.227 Atomic orbital electron populations 1.22380 0.74126 1.06318 1.04658 1.43936 1.07821 1.03698 1.59861 1.22710 0.89356 0.92768 0.96994 1.19121 0.92694 0.91114 1.18804 1.21541 0.96721 0.91976 0.86423 1.21634 0.99014 0.93366 1.14052 1.17454 0.89784 0.82666 0.75803 1.90793 1.27025 1.77419 1.53592 1.45904 1.10329 1.05352 1.74726 1.19996 0.88321 0.84142 1.02533 1.19453 0.99304 0.94852 0.92236 1.20992 1.05227 0.95191 0.97319 1.21160 0.95876 0.94511 0.97081 1.21370 1.09570 1.01861 0.92539 1.19844 0.94159 0.92998 0.86743 1.83949 1.78204 1.24561 1.27282 1.21875 1.48689 0.82658 0.95600 0.87851 1.26587 0.96561 1.05411 0.93510 1.70193 1.48360 1.38908 0.98470 0.84527 0.78183 0.73796 0.79693 1.17238 1.19387 1.19601 1.20207 1.08321 0.92973 0.98619 1.19373 0.93463 0.92918 1.05752 1.20726 0.98321 0.92844 0.99965 1.21261 0.97677 0.95089 1.02040 1.21197 0.91811 1.00333 0.99275 1.20389 1.01081 0.88420 1.04729 1.18551 0.89778 0.89367 1.05950 0.89853 0.87431 0.88577 0.77513 0.86718 0.82976 0.75129 0.89743 0.92257 0.83483 0.83259 0.86100 0.91906 0.87616 0.85970 0.83952 0.82932 0.83845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.26 10.98 127.77 1.40 1.66 16 2 N -0.47 -5.99 3.15 -538.22 -1.69 -7.69 16 3 C 0.11 1.58 10.67 83.74 0.89 2.47 16 4 C -0.21 -4.19 6.24 -19.08 -0.12 -4.31 16 5 C 0.05 1.23 9.68 23.75 0.23 1.46 16 6 C -0.26 -5.59 9.32 22.43 0.21 -5.38 16 7 C 0.55 15.64 7.56 85.05 0.64 16.28 16 8 O -0.60 -22.01 16.11 -4.61 -0.07 -22.09 16 9 N -0.71 -18.60 5.54 -475.96 -2.64 -21.24 16 10 C 0.17 5.09 5.80 85.63 0.50 5.58 16 11 C -0.06 -1.89 5.25 -19.88 -0.10 -2.00 16 12 C -0.17 -4.88 9.70 22.30 0.22 -4.66 16 13 C -0.07 -2.16 10.04 22.25 0.22 -1.93 16 14 C -0.23 -9.66 9.17 22.39 0.21 -9.46 16 15 C 0.11 5.46 6.65 22.58 0.15 5.61 16 16 O -0.23 -13.85 9.76 -22.74 -0.22 -14.08 16 17 C -0.41 -23.60 9.49 67.92 0.64 -22.95 16 18 H 0.10 5.38 5.21 -2.91 -0.02 5.37 16 19 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 20 N -0.92 -56.31 13.67 21.61 0.30 -56.02 16 21 Si 1.02 42.25 29.55 68.60 2.03 44.28 16 22 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 23 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 25 C -0.18 -7.57 9.65 22.39 0.22 -7.36 16 26 C -0.11 -2.32 6.36 -20.06 -0.13 -2.45 16 27 C -0.10 -1.92 10.09 22.40 0.23 -1.70 16 28 C -0.14 -2.08 10.03 22.28 0.22 -1.86 16 29 C -0.11 -1.30 10.01 22.28 0.22 -1.08 16 30 C -0.13 -1.63 9.91 22.37 0.22 -1.41 16 31 C 0.07 1.14 6.79 38.91 0.26 1.41 16 32 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.11 0.02 8.13 -2.39 -0.02 0.00 16 34 H 0.10 0.16 8.02 -2.39 -0.02 0.14 16 35 H 0.21 1.40 7.19 -2.91 -0.02 1.38 16 36 H 0.11 2.95 7.45 -2.91 -0.02 2.93 16 37 H 0.15 2.17 6.88 -2.91 -0.02 2.15 16 38 H 0.41 9.07 8.42 -92.71 -0.78 8.29 16 39 H 0.08 2.32 8.09 -2.38 -0.02 2.30 16 40 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 41 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 42 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 43 H 0.12 5.07 5.64 -2.91 -0.02 5.06 16 44 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 45 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 46 H 0.12 2.24 8.06 -2.91 -0.02 2.21 16 47 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 48 H 0.15 0.94 8.06 -2.91 -0.02 0.91 16 49 H 0.14 1.03 8.00 -2.91 -0.02 1.01 16 Total: -1.00 -82.32 423.84 4.71 -77.61 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.21 Total: 32.13 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 6.80 Total: -32.91 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -4.03 Total: -84.94 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -0.30 Total: -36.16 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -82.32 4.71 -77.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084314227.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.183 kcal (2) G-P(sol) polarization free energy of solvation -82.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds