Wall clock time and date at job start Tue Mar 31 2020 06:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48493 * 109.47484 * 270.00107 * 3 2 1 5 5 H 1.48503 * 109.47169 * 30.00333 * 3 2 1 6 6 H 1.48506 * 109.47138 * 149.99745 * 3 2 1 7 7 C 1.38816 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99592 * 163.06942 * 7 2 1 9 9 N 1.36933 * 120.00216 * 343.07025 * 7 2 1 10 10 C 1.46927 * 120.63022 * 151.82741 * 9 7 2 11 11 C 1.53188 * 108.89428 * 126.33925 * 10 9 7 12 12 C 1.53358 * 109.15126 * 54.57704 * 11 10 9 13 13 C 1.52992 * 109.42183 * 178.67300 * 12 11 10 14 14 N 1.46502 * 109.47309 * 295.13335 * 13 12 11 15 15 S 1.65599 * 120.00153 * 165.00172 * 14 13 12 16 16 O 1.42106 * 106.40174 * 178.53599 * 15 14 13 17 17 O 1.42099 * 106.40229 * 311.45193 * 15 14 13 18 18 C 1.76201 * 107.21934 * 64.99351 * 15 14 13 19 19 C 1.38240 * 120.00224 * 114.72372 * 18 15 14 20 20 C 1.38226 * 120.04743 * 179.76790 * 19 18 15 21 21 C 1.38261 * 120.05733 * 0.50657 * 20 19 18 22 22 C 1.38277 * 120.01255 * 359.75057 * 21 20 19 23 23 Cl 1.73601 * 120.02252 * 179.97438 * 22 21 20 24 24 C 1.38396 * 120.00980 * 294.99930 * 18 15 14 25 25 F 1.35106 * 120.02895 * 359.97438 * 24 18 15 26 26 C 1.53041 * 109.60555 * 298.71665 * 12 11 10 27 27 C 1.46927 * 120.63353 * 331.84389 * 9 7 2 28 28 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.58516 * 246.19772 * 10 9 7 30 30 H 1.09000 * 109.58539 * 6.47832 * 10 9 7 31 31 H 1.08999 * 109.49809 * 174.65694 * 11 10 9 32 32 H 1.09002 * 109.50218 * 294.75539 * 11 10 9 33 33 H 1.09005 * 109.41703 * 58.74724 * 12 11 10 34 34 H 1.09003 * 109.46873 * 55.12832 * 13 12 11 35 35 H 1.09000 * 109.47261 * 175.12864 * 13 12 11 36 36 H 0.97001 * 119.99736 * 344.99378 * 14 13 12 37 37 H 1.07994 * 119.97981 * 0.02562 * 19 18 15 38 38 H 1.07994 * 119.97091 * 180.25253 * 20 19 18 39 39 H 1.08004 * 119.99180 * 179.76640 * 21 20 19 40 40 H 1.08998 * 109.49362 * 301.41603 * 26 12 11 41 41 H 1.08995 * 109.49667 * 181.32622 * 26 12 11 42 42 H 1.09002 * 109.58387 * 353.37717 * 27 9 7 43 43 H 1.09004 * 109.58558 * 113.65693 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3699 -2.3625 0.3443 10 6 1.8136 -3.6528 -0.2008 11 6 2.0697 -4.6198 0.9593 12 6 0.8118 -4.7022 1.8327 13 6 1.0494 -5.6918 2.9749 14 7 1.2324 -7.0374 2.4252 15 16 1.8684 -8.2388 3.3710 16 8 1.8848 -9.4131 2.5708 17 8 3.0324 -7.6967 3.9795 18 6 0.7205 -8.5401 4.6734 19 6 0.0733 -9.7589 4.7562 20 6 -0.8238 -9.9980 5.7802 21 6 -1.0831 -9.0150 6.7174 22 6 -0.4410 -7.7932 6.6338 23 17 -0.7669 -6.5585 7.8099 24 6 0.4624 -7.5548 5.6103 25 9 1.0907 -6.3616 5.5273 26 6 0.4973 -3.3209 2.4118 27 6 0.2260 -2.3409 1.2661 28 1 -0.4849 0.8401 -0.0004 29 1 1.0399 -4.0599 -0.8518 30 1 2.7329 -3.5126 -0.7694 31 1 2.3076 -5.6073 0.5641 32 1 2.9047 -4.2564 1.5584 33 1 -0.0284 -5.0417 1.2268 34 1 1.9426 -5.4007 3.5279 35 1 0.1896 -5.6868 3.6448 36 1 0.9809 -7.2246 1.5073 37 1 0.2717 -10.5262 4.0226 38 1 -1.3257 -10.9519 5.8461 39 1 -1.7870 -9.2016 7.5149 40 1 1.3471 -2.9699 2.9972 41 1 -0.3832 -3.3862 3.0509 42 1 0.0992 -1.3355 1.6675 43 1 -0.6776 -2.6386 0.7341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084339072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:14 Heat of formation + Delta-G solvation = -76.763148 kcal Electronic energy + Delta-G solvation = -30486.436794 eV Core-core repulsion = 26020.660941 eV Total energy + Delta-G solvation = -4465.775853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 376.081 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -49.74319 -39.68061 -38.15903 -37.42793 -37.07791 -36.10321 -35.32121 -32.69304 -31.95269 -31.12864 -30.64099 -29.61891 -26.54207 -24.37209 -23.88766 -23.53177 -22.12217 -21.18371 -19.96020 -19.30516 -18.75139 -17.92609 -17.48112 -17.21957 -16.72085 -16.55543 -16.02040 -15.79332 -15.20727 -14.91537 -14.68161 -14.34438 -14.16552 -13.89885 -13.63707 -13.47456 -13.29231 -13.14106 -12.86874 -12.53810 -12.37668 -12.36592 -12.26203 -12.19610 -12.09271 -11.87011 -11.77108 -11.33021 -11.21581 -10.97465 -10.68036 -10.48853 -10.21633 -10.20670 -10.08178 -9.87152 -9.71298 -9.44783 -9.38923 -9.34022 -8.44133 -6.63468 -5.76560 -3.18272 -0.13888 0.14769 0.29295 1.41478 2.47987 2.80542 3.26384 3.38343 3.39383 3.46441 3.49520 3.89857 4.08345 4.25501 4.45636 4.52518 4.68250 4.92592 5.02021 5.07966 5.15671 5.24779 5.34549 5.42642 5.44119 5.46152 5.66400 5.83637 5.88654 5.91353 6.08122 6.21316 6.35839 6.52808 6.62440 6.70228 6.79003 6.83585 6.85677 7.03550 7.39580 7.67940 7.82544 8.48347 9.24583 9.88249 10.45012 11.32086 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.002539 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.305420 B =11025.352964 C =12384.839517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.145 3.855 11 C -0.129 4.129 12 C -0.082 4.082 13 C 0.115 3.885 14 N -1.106 6.106 15 S 2.697 3.303 16 O -0.954 6.954 17 O -0.939 6.939 18 C -0.705 4.705 19 C 0.010 3.990 20 C -0.138 4.138 21 C -0.032 4.032 22 C -0.096 4.096 23 Cl -0.035 7.035 24 C 0.206 3.794 25 F -0.103 7.103 26 C -0.135 4.135 27 C 0.172 3.828 28 H 0.253 0.747 29 H 0.016 0.984 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.422 0.578 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.087 0.913 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 -22.603 14.260 27.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.169 4.169 12 C -0.102 4.102 13 C -0.010 4.010 14 N -0.868 5.868 15 S 2.782 3.218 16 O -0.944 6.944 17 O -0.929 6.929 18 C -0.789 4.789 19 C -0.009 4.009 20 C -0.157 4.157 21 C -0.050 4.050 22 C -0.124 4.124 23 Cl -0.006 7.006 24 C 0.185 3.815 25 F -0.080 7.080 26 C -0.175 4.175 27 C 0.046 3.954 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.258 0.742 37 H 0.178 0.822 38 H 0.168 0.832 39 H 0.170 0.830 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -3.981 -22.664 14.463 27.178 hybrid contribution -0.434 1.234 0.232 1.328 sum -4.414 -21.430 14.695 26.357 Atomic orbital electron populations 1.70031 1.05248 1.25418 1.54168 1.25032 0.95281 0.98377 1.01027 0.86319 0.79218 0.83709 0.77677 1.21455 1.21601 1.20475 1.19180 0.92542 0.84846 1.41416 0.91773 1.44050 1.35899 1.01552 1.50040 1.20898 0.97527 0.86965 0.92780 1.22143 0.96947 0.98994 0.98792 1.21313 0.98966 0.94883 0.95079 1.21798 1.01641 0.80273 0.97303 1.55408 1.83448 1.22599 1.25377 1.02028 0.73742 0.72848 0.73173 1.93593 1.86489 1.46991 1.67372 1.93651 1.43074 1.78693 1.77496 1.31318 1.24687 1.01998 1.20913 1.21040 0.89971 0.93651 0.96284 1.21377 0.99406 1.00181 0.94741 1.21344 0.95692 0.89910 0.98086 1.21073 1.02301 0.93963 0.95074 1.98428 1.94396 1.52228 1.55555 1.16761 0.90568 0.81037 0.93178 1.91700 1.79347 1.41838 1.95161 1.22213 1.00366 0.94786 1.00141 1.20749 0.88614 0.98109 0.87902 0.93707 0.96622 0.92877 0.93050 0.91975 0.91141 0.89787 0.92232 0.74198 0.82196 0.83175 0.83046 0.92225 0.93138 0.89444 0.96479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 11.20 55.49 0.62 -25.53 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 8 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.73 2.99 -172.32 -0.52 -15.25 16 10 C 0.14 2.99 6.50 -3.71 -0.02 2.97 16 11 C -0.13 -2.19 5.28 -26.45 -0.14 -2.33 16 12 C -0.08 -1.28 2.18 -90.42 -0.20 -1.47 16 13 C 0.12 1.50 3.95 -4.04 -0.02 1.48 16 14 N -1.11 -12.29 5.51 -10.61 -0.06 -12.34 16 15 S 2.70 31.40 5.48 -107.50 -0.59 30.81 16 16 O -0.95 -12.00 16.97 -57.17 -0.97 -12.97 16 17 O -0.94 -14.15 16.90 -57.17 -0.97 -15.12 16 18 C -0.71 -7.00 5.89 -39.52 -0.23 -7.24 16 19 C 0.01 0.07 9.55 -39.59 -0.38 -0.31 16 20 C -0.14 -0.74 10.04 -39.58 -0.40 -1.14 16 21 C -0.03 -0.19 9.83 -39.56 -0.39 -0.58 16 22 C -0.10 -0.87 6.33 -39.44 -0.25 -1.12 16 23 Cl -0.04 -0.33 28.62 -51.86 -1.48 -1.81 16 24 C 0.21 2.23 6.78 -39.40 -0.27 1.97 16 25 F -0.10 -1.28 12.51 2.25 0.03 -1.25 16 26 C -0.13 -2.46 5.36 -26.62 -0.14 -2.60 16 27 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 28 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 31 H 0.05 0.73 7.52 -51.93 -0.39 0.34 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.18 7.25 -51.93 -0.38 0.80 16 35 H 0.06 0.70 6.74 -51.93 -0.35 0.35 16 36 H 0.42 3.97 8.37 -34.47 -0.29 3.68 16 37 H 0.16 0.90 7.33 -52.49 -0.38 0.52 16 38 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 39 H 0.15 0.51 8.06 -52.48 -0.42 0.09 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -33.78 374.94 -11.44 -45.23 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.45 Total: -0.70 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -2.68 Total: -13.45 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.05 Total: -53.13 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -1.94 Total: -28.09 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.03 Total: -1.25 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Atomic # 16 Polarization: 31.40 SS G_CDS: -0.59 Total: 30.81 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.48 Total: -1.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.78 -11.44 -45.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084339072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.536 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds