Wall clock time and date at job start Tue Mar 31 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48493 * 109.47484 * 270.00107 * 3 2 1 5 5 H 1.48503 * 109.47169 * 30.00333 * 3 2 1 6 6 H 1.48506 * 109.47138 * 149.99745 * 3 2 1 7 7 C 1.38816 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99592 * 163.06942 * 7 2 1 9 9 N 1.36933 * 120.00216 * 343.07025 * 7 2 1 10 10 C 1.46927 * 120.63022 * 151.82741 * 9 7 2 11 11 C 1.53188 * 108.89428 * 126.33925 * 10 9 7 12 12 C 1.53358 * 109.15126 * 54.57704 * 11 10 9 13 13 C 1.52992 * 109.42183 * 178.67300 * 12 11 10 14 14 N 1.46502 * 109.47309 * 295.13335 * 13 12 11 15 15 S 1.65599 * 120.00153 * 165.00172 * 14 13 12 16 16 O 1.42106 * 106.40174 * 178.53599 * 15 14 13 17 17 O 1.42099 * 106.40229 * 311.45193 * 15 14 13 18 18 C 1.76201 * 107.21934 * 64.99351 * 15 14 13 19 19 C 1.38240 * 120.00224 * 114.72372 * 18 15 14 20 20 C 1.38226 * 120.04743 * 179.76790 * 19 18 15 21 21 C 1.38261 * 120.05733 * 0.50657 * 20 19 18 22 22 C 1.38277 * 120.01255 * 359.75057 * 21 20 19 23 23 Cl 1.73601 * 120.02252 * 179.97438 * 22 21 20 24 24 C 1.38396 * 120.00980 * 294.99930 * 18 15 14 25 25 F 1.35106 * 120.02895 * 359.97438 * 24 18 15 26 26 C 1.53041 * 109.60555 * 298.71665 * 12 11 10 27 27 C 1.46927 * 120.63353 * 331.84389 * 9 7 2 28 28 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.58516 * 246.19772 * 10 9 7 30 30 H 1.09000 * 109.58539 * 6.47832 * 10 9 7 31 31 H 1.08999 * 109.49809 * 174.65694 * 11 10 9 32 32 H 1.09002 * 109.50218 * 294.75539 * 11 10 9 33 33 H 1.09005 * 109.41703 * 58.74724 * 12 11 10 34 34 H 1.09003 * 109.46873 * 55.12832 * 13 12 11 35 35 H 1.09000 * 109.47261 * 175.12864 * 13 12 11 36 36 H 0.97001 * 119.99736 * 344.99378 * 14 13 12 37 37 H 1.07994 * 119.97981 * 0.02562 * 19 18 15 38 38 H 1.07994 * 119.97091 * 180.25253 * 20 19 18 39 39 H 1.08004 * 119.99180 * 179.76640 * 21 20 19 40 40 H 1.08998 * 109.49362 * 301.41603 * 26 12 11 41 41 H 1.08995 * 109.49667 * 181.32622 * 26 12 11 42 42 H 1.09002 * 109.58387 * 353.37717 * 27 9 7 43 43 H 1.09004 * 109.58558 * 113.65693 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3699 -2.3625 0.3443 10 6 1.8136 -3.6528 -0.2008 11 6 2.0697 -4.6198 0.9593 12 6 0.8118 -4.7022 1.8327 13 6 1.0494 -5.6918 2.9749 14 7 1.2324 -7.0374 2.4252 15 16 1.8684 -8.2388 3.3710 16 8 1.8848 -9.4131 2.5708 17 8 3.0324 -7.6967 3.9795 18 6 0.7205 -8.5401 4.6734 19 6 0.0733 -9.7589 4.7562 20 6 -0.8238 -9.9980 5.7802 21 6 -1.0831 -9.0150 6.7174 22 6 -0.4410 -7.7932 6.6338 23 17 -0.7669 -6.5585 7.8099 24 6 0.4624 -7.5548 5.6103 25 9 1.0907 -6.3616 5.5273 26 6 0.4973 -3.3209 2.4118 27 6 0.2260 -2.3409 1.2661 28 1 -0.4849 0.8401 -0.0004 29 1 1.0399 -4.0599 -0.8518 30 1 2.7329 -3.5126 -0.7694 31 1 2.3076 -5.6073 0.5641 32 1 2.9047 -4.2564 1.5584 33 1 -0.0284 -5.0417 1.2268 34 1 1.9426 -5.4007 3.5279 35 1 0.1896 -5.6868 3.6448 36 1 0.9809 -7.2246 1.5073 37 1 0.2717 -10.5262 4.0226 38 1 -1.3257 -10.9519 5.8461 39 1 -1.7870 -9.2016 7.5149 40 1 1.3471 -2.9699 2.9972 41 1 -0.3832 -3.3862 3.0509 42 1 0.0992 -1.3355 1.6675 43 1 -0.6776 -2.6386 0.7341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084339072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:13 Heat of formation + Delta-G solvation = -99.523019 kcal Electronic energy + Delta-G solvation = -30487.423736 eV Core-core repulsion = 26020.660941 eV Total energy + Delta-G solvation = -4466.762795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 376.081 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.52793 -40.25017 -39.63150 -38.42445 -37.72805 -37.10151 -36.73778 -34.38065 -32.54504 -32.35288 -31.69796 -31.31522 -28.13550 -25.62668 -24.95172 -24.12325 -23.74444 -22.72971 -20.98230 -20.58787 -19.67719 -18.89617 -18.48836 -18.21922 -17.95706 -17.49095 -16.98094 -16.73074 -16.46969 -15.84573 -15.76567 -15.70605 -15.38935 -15.28088 -14.88656 -14.76520 -14.37553 -14.23547 -13.88351 -13.77968 -13.64628 -13.36792 -13.27740 -13.24692 -13.09366 -13.00424 -12.88935 -12.79489 -12.53728 -12.46411 -12.27359 -11.99095 -11.93675 -11.82019 -11.54582 -11.17327 -11.12270 -10.68114 -10.52038 -10.48665 -9.98102 -8.64955 -7.86573 -5.30944 -0.87830 -0.60048 -0.29614 0.78419 1.45746 1.47550 1.57299 1.76811 2.09258 2.49396 2.51942 2.64493 3.16415 3.27909 3.51128 3.66805 3.72737 3.80484 3.94147 3.96932 4.04100 4.11671 4.38050 4.50305 4.53418 4.55845 4.56945 4.68460 4.75737 4.80968 4.87632 4.95488 4.96848 5.07512 5.21858 5.30961 5.32763 5.40893 5.44298 5.56932 5.67500 5.81334 6.01044 6.41274 7.17232 7.89560 8.40231 9.19543 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.002539 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.305420 B =11025.352964 C =12384.839517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.050 4.050 3 Si 0.964 3.036 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.263 4.263 8 H 0.062 0.938 9 N -0.612 5.612 10 C 0.140 3.860 11 C -0.121 4.121 12 C -0.075 4.075 13 C 0.127 3.873 14 N -1.102 6.102 15 S 2.713 3.287 16 O -0.965 6.965 17 O -0.980 6.980 18 C -0.712 4.712 19 C 0.006 3.994 20 C -0.120 4.120 21 C -0.022 4.022 22 C -0.107 4.107 23 Cl -0.045 7.045 24 C 0.176 3.824 25 F -0.122 7.122 26 C -0.124 4.124 27 C 0.178 3.822 28 H 0.250 0.750 29 H 0.019 0.981 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.431 0.569 37 H 0.178 0.822 38 H 0.194 0.806 39 H 0.184 0.816 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.620 -25.398 15.325 30.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.393 4.393 8 H 0.080 0.920 9 N -0.336 5.336 10 C 0.014 3.986 11 C -0.160 4.160 12 C -0.096 4.096 13 C 0.001 3.999 14 N -0.865 5.865 15 S 2.802 3.198 16 O -0.955 6.955 17 O -0.970 6.970 18 C -0.799 4.799 19 C -0.013 4.013 20 C -0.139 4.139 21 C -0.041 4.041 22 C -0.136 4.136 23 Cl -0.016 7.016 24 C 0.155 3.845 25 F -0.100 7.100 26 C -0.164 4.164 27 C 0.052 3.948 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.269 0.731 37 H 0.195 0.805 38 H 0.211 0.789 39 H 0.201 0.799 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -4.868 -25.482 15.491 30.216 hybrid contribution -0.215 1.971 -0.089 1.984 sum -5.083 -23.512 15.402 28.563 Atomic orbital electron populations 1.70175 1.06524 1.25762 1.55490 1.25756 0.96067 1.01335 1.01399 0.85329 0.78074 0.79788 0.77577 1.21097 1.21737 1.19836 1.19482 0.92728 0.86260 1.40842 0.92034 1.44334 1.36077 1.02325 1.50889 1.21062 0.97167 0.86079 0.94252 1.22033 0.97209 0.99333 0.97396 1.21200 0.98631 0.93959 0.95765 1.21545 1.01904 0.80338 0.96161 1.55211 1.83429 1.21785 1.26088 1.01196 0.73365 0.72261 0.73008 1.93572 1.86847 1.47129 1.67962 1.93603 1.45852 1.79346 1.78197 1.30950 1.25373 1.03255 1.20350 1.21438 0.89764 0.92830 0.97306 1.21882 0.97782 1.01377 0.92810 1.21825 0.95004 0.88545 0.98714 1.21304 1.02681 0.94907 0.94684 1.98423 1.94398 1.52995 1.55773 1.17049 0.91938 0.80908 0.94651 1.91644 1.79970 1.42940 1.95412 1.22014 1.01030 0.95085 0.98298 1.20573 0.87737 0.97533 0.88951 0.94129 0.96334 0.93336 0.89907 0.93230 0.89957 0.90918 0.90630 0.73132 0.80475 0.78884 0.79886 0.93182 0.90823 0.93069 0.98204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.62 11.20 21.65 0.24 -55.38 16 2 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 3 Si 0.96 45.69 29.59 68.60 2.03 47.72 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.26 -14.79 9.58 84.04 0.81 -13.98 16 8 H 0.06 3.41 7.88 -2.91 -0.02 3.39 16 9 N -0.61 -31.13 2.99 -699.11 -2.09 -33.23 16 10 C 0.14 5.78 6.50 86.36 0.56 6.35 16 11 C -0.12 -3.97 5.28 30.78 0.16 -3.81 16 12 C -0.08 -2.26 2.18 -10.66 -0.02 -2.28 16 13 C 0.13 3.14 3.95 86.38 0.34 3.48 16 14 N -1.10 -22.79 5.51 -187.49 -1.03 -23.82 16 15 S 2.71 60.29 5.48 -56.49 -0.31 59.98 16 16 O -0.96 -22.71 16.97 -128.00 -2.17 -24.88 16 17 O -0.98 -29.56 16.90 -128.00 -2.16 -31.72 16 18 C -0.71 -12.89 5.89 22.31 0.13 -12.76 16 19 C 0.01 0.06 9.55 22.27 0.21 0.28 16 20 C -0.12 -0.72 10.04 22.27 0.22 -0.50 16 21 C -0.02 -0.19 9.83 22.28 0.22 0.03 16 22 C -0.11 -1.74 6.33 22.36 0.14 -1.60 16 23 Cl -0.04 -0.78 28.62 -2.72 -0.08 -0.86 16 24 C 0.18 3.61 6.78 22.39 0.15 3.76 16 25 F -0.12 -3.03 12.51 44.97 0.56 -2.47 16 26 C -0.12 -4.52 5.36 30.67 0.16 -4.36 16 27 C 0.18 8.52 5.30 86.36 0.46 8.98 16 28 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 31 H 0.08 2.21 7.52 -2.39 -0.02 2.19 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.07 2.01 7.25 -2.39 -0.02 2.00 16 35 H 0.08 1.67 6.74 -2.39 -0.02 1.66 16 36 H 0.43 7.20 8.37 -96.74 -0.81 6.39 16 37 H 0.18 1.35 7.33 -2.91 -0.02 1.33 16 38 H 0.19 -0.46 8.06 -2.91 -0.02 -0.49 16 39 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.05 2.81 6.06 -2.39 -0.01 2.79 16 43 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 Total: -1.00 -75.97 374.94 -0.80 -76.77 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 0.25 Total: 6.74 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 3.97 Total: -18.85 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -2.88 Total: -112.43 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -4.34 Total: -56.60 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.56 Total: -2.47 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 16 Polarization: 60.29 SS G_CDS: -0.31 Total: 59.98 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -75.97 -0.80 -76.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084339072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.751 kcal (2) G-P(sol) polarization free energy of solvation -75.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds