Wall clock time and date at job start Tue Mar 31 2020 06:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99858 * 2 1 4 4 H 1.48501 * 109.46760 * 269.99642 * 3 2 1 5 5 H 1.48498 * 109.47125 * 29.99008 * 3 2 1 6 6 H 1.48490 * 109.47535 * 149.99827 * 3 2 1 7 7 C 1.37874 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00053 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99928 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.47033 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00419 * 103.41059 * 10 9 7 12 12 O 1.21574 * 120.00075 * 186.14531 * 11 10 9 13 13 C 1.47689 * 119.99837 * 6.15194 * 11 10 9 14 14 C 1.40177 * 120.41063 * 326.72341 * 13 11 10 15 15 N 1.31190 * 121.37779 * 180.02562 * 14 13 11 16 16 C 1.32928 * 121.84416 * 0.02562 * 15 14 13 17 17 C 1.41070 * 120.20048 * 359.71764 * 16 15 14 18 18 C 1.45972 * 106.42977 * 179.80988 * 17 16 15 19 19 N 1.30197 * 107.58905 * 0.39757 * 18 17 16 20 20 N 1.36629 * 133.26984 * 179.97438 * 16 15 14 21 21 C 1.46494 * 125.33844 * 0.02562 * 20 16 15 22 22 C 1.50707 * 109.46830 * 90.00763 * 21 20 16 23 23 C 1.38235 * 119.99657 * 269.72492 * 22 21 20 24 24 C 1.38242 * 119.99540 * 179.76732 * 23 22 21 25 25 C 1.38235 * 119.99933 * 0.50308 * 24 23 22 26 26 C 1.38227 * 120.00135 * 359.75119 * 25 24 23 27 27 C 1.38235 * 120.00147 * 359.97438 * 26 25 24 28 28 C 1.39513 * 120.40814 * 146.74746 * 13 11 10 29 29 C 1.46504 * 119.99798 * 283.41343 * 10 9 7 30 30 C 1.52998 * 117.49924 * 196.32553 * 29 10 9 31 31 C 1.52995 * 117.50025 * 127.66578 * 29 10 9 32 32 H 0.97000 * 120.00633 * 0.02562 * 1 2 3 33 33 H 1.08994 * 109.47349 * 60.00242 * 9 7 2 34 34 H 1.09005 * 109.47215 * 300.00212 * 9 7 2 35 35 H 1.08007 * 119.30877 * 0.02562 * 14 13 11 36 36 H 1.07999 * 126.20503 * 180.11371 * 18 17 16 37 37 H 1.09003 * 109.47355 * 209.99924 * 21 20 16 38 38 H 1.08997 * 109.47471 * 330.00793 * 21 20 16 39 39 H 1.07998 * 120.00466 * 359.97438 * 23 22 21 40 40 H 1.08004 * 119.99464 * 180.22951 * 24 23 22 41 41 H 1.08003 * 119.99367 * 179.72683 * 25 24 23 42 42 H 1.08003 * 119.99803 * 179.97438 * 26 25 24 43 43 H 1.07995 * 120.00255 * 179.97438 * 27 26 25 44 44 H 1.07991 * 121.02554 * 359.97438 * 28 13 11 45 45 H 1.09003 * 115.54533 * 341.99281 * 29 10 9 46 46 H 1.08993 * 117.49988 * 359.97438 * 30 29 10 47 47 H 1.09004 * 117.49999 * 145.02244 * 30 29 10 48 48 H 1.08999 * 117.49854 * 214.98280 * 31 29 10 49 49 H 1.09002 * 117.50018 * 359.97429 * 31 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6998 6 1 3.5465 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 3.9999 -2.5751 0.0010 11 6 4.4802 -3.1200 -1.1342 12 8 4.7811 -4.2976 -1.1634 13 6 4.6412 -2.2865 -2.3428 14 6 3.7488 -1.2380 -2.6057 15 7 3.8737 -0.4862 -3.6735 16 6 4.8479 -0.6793 -4.5571 17 6 5.7897 -1.7111 -4.3609 18 6 6.7057 -1.6552 -5.4960 19 7 6.3235 -0.6744 -6.2622 20 7 5.1926 -0.0547 -5.7224 21 6 4.4879 1.0856 -6.3132 22 6 5.0816 2.3685 -5.7908 23 6 4.5715 2.9498 -4.6450 24 6 5.1192 4.1240 -4.1631 25 6 6.1701 4.7224 -4.8327 26 6 6.6767 4.1438 -5.9814 27 6 6.1327 2.9667 -6.4602 28 6 5.6831 -2.5334 -3.2371 29 6 3.9661 -3.3641 1.2350 30 6 4.8183 -4.6337 1.2853 31 6 3.2950 -4.7377 1.1771 32 1 -0.4851 0.8400 -0.0004 33 1 3.8745 -0.6799 0.8911 34 1 3.8752 -0.6802 -0.8889 35 1 2.9414 -1.0451 -1.9147 36 1 7.5504 -2.3063 -5.6667 37 1 4.5899 1.0534 -7.3980 38 1 3.4322 1.0385 -6.0460 39 1 3.7473 2.4849 -4.1244 40 1 4.7231 4.5762 -3.2658 41 1 6.5951 5.6421 -4.4586 42 1 7.4975 4.6116 -6.5048 43 1 6.5282 2.5149 -7.3578 44 1 6.3877 -3.3332 -3.0639 45 1 3.8616 -2.7912 2.1564 46 1 5.4038 -4.8823 0.4001 47 1 5.2741 -4.8965 2.2399 48 1 2.7492 -5.0689 2.0605 49 1 2.8782 -5.0544 0.2209 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084544534.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:30 Heat of formation + Delta-G solvation = 164.012335 kcal Electronic energy + Delta-G solvation = -34230.416480 eV Core-core repulsion = 29933.656485 eV Total energy + Delta-G solvation = -4296.759995 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.53324 -39.98860 -39.27224 -37.73288 -35.91297 -34.50072 -34.35231 -32.48869 -32.08579 -31.01562 -30.37838 -29.81518 -28.08524 -26.44032 -24.32753 -23.57315 -22.72116 -22.40914 -21.99354 -21.87017 -21.72542 -20.49992 -19.12322 -17.71612 -17.25402 -17.13123 -16.90343 -16.26853 -15.83180 -15.67459 -15.21264 -15.07134 -14.91930 -14.52402 -14.44607 -14.15869 -13.99976 -13.55963 -13.44071 -13.37189 -13.05638 -13.04587 -12.74881 -12.67995 -12.36128 -12.33579 -12.32646 -11.50428 -11.42233 -11.28006 -11.15159 -11.01486 -10.91645 -10.74445 -10.58806 -10.34948 -10.11080 -9.84843 -9.67747 -9.40778 -9.03654 -9.02811 -8.95817 -8.86123 -8.70421 -8.16311 -7.65315 -6.36526 -4.41331 0.90941 1.02735 1.17713 1.29197 2.27175 2.49131 3.12366 3.17731 3.18366 3.21878 3.52423 3.68759 4.02103 4.15134 4.22323 4.38550 4.51289 4.55934 4.65362 4.75667 4.86972 4.91021 4.92727 5.00597 5.09322 5.16799 5.27528 5.33287 5.42269 5.44179 5.47582 5.52651 5.58851 5.62425 5.81633 5.89991 5.93568 6.11103 6.19615 6.22014 6.27255 6.30290 6.35924 6.39993 6.46534 6.48986 6.59964 6.63105 6.82050 6.85304 6.93152 7.18963 7.36866 7.47843 7.92241 8.13011 8.26762 8.67504 8.76382 9.20186 10.74483 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.008652 B = 0.003559 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.312241 B = 7866.527620 C =10151.780504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.087 3.913 3 Si 0.855 3.145 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.551 4.551 8 H 0.087 0.913 9 C 0.185 3.815 10 N -0.555 5.555 11 C 0.570 3.430 12 O -0.553 6.553 13 C -0.226 4.226 14 C 0.191 3.809 15 N -0.508 5.508 16 C 0.331 3.669 17 C -0.249 4.249 18 C 0.092 3.908 19 N -0.246 5.246 20 N -0.388 5.388 21 C 0.184 3.816 22 C -0.117 4.117 23 C -0.090 4.090 24 C -0.124 4.124 25 C -0.112 4.112 26 C -0.129 4.129 27 C -0.094 4.094 28 C 0.057 3.943 29 C 0.092 3.908 30 C -0.203 4.203 31 C -0.183 4.183 32 H 0.270 0.730 33 H 0.035 0.965 34 H 0.050 0.950 35 H 0.222 0.778 36 H 0.200 0.800 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.145 0.855 45 H 0.127 0.873 46 H 0.133 0.867 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.702 4.006 -9.239 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.120 4.120 3 Si 0.681 3.319 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.588 4.588 8 H 0.105 0.895 9 C 0.065 3.935 10 N -0.281 5.281 11 C 0.359 3.641 12 O -0.435 6.435 13 C -0.233 4.233 14 C 0.024 3.976 15 N -0.223 5.223 16 C 0.092 3.908 17 C -0.259 4.259 18 C -0.107 4.107 19 N -0.057 5.057 20 N -0.178 5.178 21 C 0.063 3.937 22 C -0.118 4.118 23 C -0.109 4.109 24 C -0.142 4.142 25 C -0.130 4.130 26 C -0.147 4.147 27 C -0.113 4.113 28 C 0.029 3.971 29 C -0.013 4.013 30 C -0.240 4.240 31 C -0.221 4.221 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.237 0.763 36 H 0.216 0.784 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.163 0.837 45 H 0.144 0.856 46 H 0.151 0.849 47 H 0.100 0.900 48 H 0.108 0.892 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.252 5.050 -10.641 16.996 hybrid contribution 0.594 0.058 1.028 1.189 sum 12.846 5.109 -9.613 16.838 Atomic orbital electron populations 1.69865 1.06221 1.27629 1.47315 1.24867 0.94734 0.98778 0.93600 0.87137 0.80695 0.84211 0.79889 1.18587 1.20506 1.18681 1.21327 0.88566 0.95542 1.53374 0.89507 1.20592 0.96204 0.78073 0.98665 1.47176 1.58868 1.14919 1.07168 1.17848 0.77360 0.86402 0.82482 1.90557 1.53447 1.15622 1.83834 1.20751 1.01121 1.02168 0.99225 1.24985 0.96913 0.85570 0.90145 1.67034 1.21106 1.30691 1.03452 1.19355 0.92031 0.90755 0.88668 1.20361 1.01930 1.03188 1.00382 1.24996 0.98858 0.96064 0.90819 1.76612 0.98789 1.08990 1.21343 1.48162 1.24151 1.27997 1.17514 1.20501 0.95417 0.79360 0.98381 1.20074 0.98184 0.96520 0.97061 1.21319 0.99676 0.95090 0.94788 1.21224 0.96868 0.96041 1.00088 1.21213 0.96528 0.99796 0.95482 1.21110 1.00349 0.96258 0.97001 1.21051 0.95218 0.95294 0.99712 1.20992 0.94052 0.93817 0.88286 1.21466 1.05050 0.86639 0.88157 1.23831 0.95173 1.01024 1.04000 1.23127 0.95082 1.00952 1.02953 0.91956 0.94718 0.93346 0.76280 0.78379 0.88162 0.87578 0.85070 0.85825 0.86082 0.86053 0.85920 0.83696 0.85565 0.84928 0.89986 0.89221 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.10 13.96 55.43 0.77 -23.32 16 2 C 0.09 2.21 5.45 -17.82 -0.10 2.11 16 3 Si 0.86 18.82 27.47 -169.99 -4.67 14.15 16 4 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.26 -5.53 6.54 56.52 0.37 -5.16 16 7 C -0.55 -13.65 8.16 -34.44 -0.28 -13.93 16 8 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 9 C 0.19 3.95 3.78 -5.19 -0.02 3.93 16 10 N -0.55 -11.09 2.86 -168.64 -0.48 -11.57 16 11 C 0.57 11.27 7.23 -12.40 -0.09 11.18 16 12 O -0.55 -11.28 12.57 5.30 0.07 -11.21 16 13 C -0.23 -4.17 5.52 -104.83 -0.58 -4.75 16 14 C 0.19 3.77 8.58 -17.10 -0.15 3.63 16 15 N -0.51 -9.66 10.37 -12.07 -0.13 -9.79 16 16 C 0.33 5.66 7.96 -156.09 -1.24 4.42 16 17 C -0.25 -3.83 6.36 -105.20 -0.67 -4.50 16 18 C 0.09 1.13 12.30 -15.15 -0.19 0.95 16 19 N -0.25 -3.40 12.39 31.87 0.39 -3.00 16 20 N -0.39 -5.79 3.61 -61.57 -0.22 -6.02 16 21 C 0.18 2.30 6.53 -5.19 -0.03 2.27 16 22 C -0.12 -1.50 5.46 -104.62 -0.57 -2.07 16 23 C -0.09 -1.25 9.70 -39.58 -0.38 -1.64 16 24 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 25 C -0.11 -1.21 10.05 -39.59 -0.40 -1.61 16 26 C -0.13 -1.35 10.05 -39.59 -0.40 -1.75 16 27 C -0.09 -1.06 9.70 -39.58 -0.38 -1.45 16 28 C 0.06 0.90 9.79 -38.58 -0.38 0.52 16 29 C 0.09 1.66 6.53 -67.93 -0.44 1.21 16 30 C -0.20 -3.30 9.63 -26.70 -0.26 -3.55 16 31 C -0.18 -3.17 9.88 -26.70 -0.26 -3.43 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 34 H 0.05 1.03 3.28 -52.02 -0.17 0.86 16 35 H 0.22 4.81 3.74 -52.48 -0.20 4.61 16 36 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 38 H 0.11 1.33 8.08 -51.93 -0.42 0.91 16 39 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 40 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 41 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 44 H 0.15 1.93 8.02 -52.49 -0.42 1.51 16 45 H 0.13 2.12 8.14 -51.93 -0.42 1.70 16 46 H 0.13 2.39 5.22 -52.12 -0.27 2.12 16 47 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.09 1.85 7.60 -51.93 -0.39 1.46 16 LS Contribution 407.04 15.07 6.13 6.13 Total: -1.00 -29.80 407.04 -11.41 -41.21 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -6.06 Total: 13.83 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -7.22 Total: -10.41 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.34 Total: -53.70 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.07 Total: -11.21 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.67 Total: 14.15 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.80 -11.41 -41.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084544534.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.223 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds