Wall clock time and date at job start Tue Mar 31 2020 06:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99858 * 2 1 4 4 H 1.48501 * 109.46760 * 269.99642 * 3 2 1 5 5 H 1.48498 * 109.47125 * 29.99008 * 3 2 1 6 6 H 1.48490 * 109.47535 * 149.99827 * 3 2 1 7 7 C 1.37874 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00053 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99928 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.47033 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00419 * 103.41059 * 10 9 7 12 12 O 1.21574 * 120.00075 * 186.14531 * 11 10 9 13 13 C 1.47689 * 119.99837 * 6.15194 * 11 10 9 14 14 C 1.40177 * 120.41063 * 326.72341 * 13 11 10 15 15 N 1.31190 * 121.37779 * 180.02562 * 14 13 11 16 16 C 1.32928 * 121.84416 * 0.02562 * 15 14 13 17 17 C 1.41070 * 120.20048 * 359.71764 * 16 15 14 18 18 C 1.45972 * 106.42977 * 179.80988 * 17 16 15 19 19 N 1.30197 * 107.58905 * 0.39757 * 18 17 16 20 20 N 1.36629 * 133.26984 * 179.97438 * 16 15 14 21 21 C 1.46494 * 125.33844 * 0.02562 * 20 16 15 22 22 C 1.50707 * 109.46830 * 90.00763 * 21 20 16 23 23 C 1.38235 * 119.99657 * 269.72492 * 22 21 20 24 24 C 1.38242 * 119.99540 * 179.76732 * 23 22 21 25 25 C 1.38235 * 119.99933 * 0.50308 * 24 23 22 26 26 C 1.38227 * 120.00135 * 359.75119 * 25 24 23 27 27 C 1.38235 * 120.00147 * 359.97438 * 26 25 24 28 28 C 1.39513 * 120.40814 * 146.74746 * 13 11 10 29 29 C 1.46504 * 119.99798 * 283.41343 * 10 9 7 30 30 C 1.52998 * 117.49924 * 196.32553 * 29 10 9 31 31 C 1.52995 * 117.50025 * 127.66578 * 29 10 9 32 32 H 0.97000 * 120.00633 * 0.02562 * 1 2 3 33 33 H 1.08994 * 109.47349 * 60.00242 * 9 7 2 34 34 H 1.09005 * 109.47215 * 300.00212 * 9 7 2 35 35 H 1.08007 * 119.30877 * 0.02562 * 14 13 11 36 36 H 1.07999 * 126.20503 * 180.11371 * 18 17 16 37 37 H 1.09003 * 109.47355 * 209.99924 * 21 20 16 38 38 H 1.08997 * 109.47471 * 330.00793 * 21 20 16 39 39 H 1.07998 * 120.00466 * 359.97438 * 23 22 21 40 40 H 1.08004 * 119.99464 * 180.22951 * 24 23 22 41 41 H 1.08003 * 119.99367 * 179.72683 * 25 24 23 42 42 H 1.08003 * 119.99803 * 179.97438 * 26 25 24 43 43 H 1.07995 * 120.00255 * 179.97438 * 27 26 25 44 44 H 1.07991 * 121.02554 * 359.97438 * 28 13 11 45 45 H 1.09003 * 115.54533 * 341.99281 * 29 10 9 46 46 H 1.08993 * 117.49988 * 359.97438 * 30 29 10 47 47 H 1.09004 * 117.49999 * 145.02244 * 30 29 10 48 48 H 1.08999 * 117.49854 * 214.98280 * 31 29 10 49 49 H 1.09002 * 117.50018 * 359.97429 * 31 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6998 6 1 3.5465 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 3.9999 -2.5751 0.0010 11 6 4.4802 -3.1200 -1.1342 12 8 4.7811 -4.2976 -1.1634 13 6 4.6412 -2.2865 -2.3428 14 6 3.7488 -1.2380 -2.6057 15 7 3.8737 -0.4862 -3.6735 16 6 4.8479 -0.6793 -4.5571 17 6 5.7897 -1.7111 -4.3609 18 6 6.7057 -1.6552 -5.4960 19 7 6.3235 -0.6744 -6.2622 20 7 5.1926 -0.0547 -5.7224 21 6 4.4879 1.0856 -6.3132 22 6 5.0816 2.3685 -5.7908 23 6 4.5715 2.9498 -4.6450 24 6 5.1192 4.1240 -4.1631 25 6 6.1701 4.7224 -4.8327 26 6 6.6767 4.1438 -5.9814 27 6 6.1327 2.9667 -6.4602 28 6 5.6831 -2.5334 -3.2371 29 6 3.9661 -3.3641 1.2350 30 6 4.8183 -4.6337 1.2853 31 6 3.2950 -4.7377 1.1771 32 1 -0.4851 0.8400 -0.0004 33 1 3.8745 -0.6799 0.8911 34 1 3.8752 -0.6802 -0.8889 35 1 2.9414 -1.0451 -1.9147 36 1 7.5504 -2.3063 -5.6667 37 1 4.5899 1.0534 -7.3980 38 1 3.4322 1.0385 -6.0460 39 1 3.7473 2.4849 -4.1244 40 1 4.7231 4.5762 -3.2658 41 1 6.5951 5.6421 -4.4586 42 1 7.4975 4.6116 -6.5048 43 1 6.5282 2.5149 -7.3578 44 1 6.3877 -3.3332 -3.0639 45 1 3.8616 -2.7912 2.1564 46 1 5.4038 -4.8823 0.4001 47 1 5.2741 -4.8965 2.2399 48 1 2.7492 -5.0689 2.0605 49 1 2.8782 -5.0544 0.2209 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084544534.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:29 Heat of formation + Delta-G solvation = 149.365159 kcal Electronic energy + Delta-G solvation = -34231.051629 eV Core-core repulsion = 29933.656485 eV Total energy + Delta-G solvation = -4297.395144 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.76522 -41.42370 -40.20608 -39.03346 -37.43223 -36.09100 -35.40016 -34.32630 -33.34891 -31.90682 -31.49266 -31.06883 -29.89115 -27.48486 -25.59104 -25.09385 -24.13438 -23.61884 -23.24626 -23.16130 -22.85320 -21.56705 -20.54116 -19.12222 -18.91286 -18.62321 -17.87745 -17.77626 -17.00687 -16.84240 -16.50102 -16.31246 -16.14214 -16.02882 -15.69156 -15.64600 -15.15222 -14.82760 -14.68625 -14.49467 -14.38567 -14.33347 -14.28769 -13.97748 -13.60199 -13.56040 -13.31089 -13.19908 -12.90406 -12.55946 -12.43514 -12.33475 -12.15016 -12.10391 -11.97935 -11.79229 -11.63794 -11.55398 -11.18506 -10.87175 -10.79730 -10.34212 -10.04913 -9.93715 -9.90471 -9.44459 -9.18882 -8.37224 -6.45215 -0.32962 -0.23050 0.13238 0.38643 1.18495 1.33582 1.37974 1.40386 1.42423 1.69106 2.05380 2.26963 2.62992 2.76989 2.94630 3.08739 3.13696 3.20604 3.51176 3.57715 3.62978 3.78043 3.82708 3.98920 4.03436 4.05632 4.16800 4.19269 4.24015 4.29617 4.34106 4.37110 4.53257 4.54263 4.57012 4.63896 4.73534 4.85083 4.89512 4.94937 4.96941 5.03916 5.12465 5.15448 5.31449 5.41525 5.43473 5.44333 5.50784 5.54007 5.65950 5.84252 5.98727 6.08851 6.34112 6.52191 6.65191 6.79534 7.12875 7.23738 8.77838 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.008652 B = 0.003559 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.312241 B = 7866.527620 C =10151.780504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.040 3.960 3 Si 0.913 3.087 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.241 1.241 7 C -0.541 4.541 8 H 0.042 0.958 9 C 0.196 3.804 10 N -0.562 5.562 11 C 0.568 3.432 12 O -0.563 6.563 13 C -0.246 4.246 14 C 0.176 3.824 15 N -0.527 5.527 16 C 0.310 3.690 17 C -0.251 4.251 18 C 0.113 3.887 19 N -0.250 5.250 20 N -0.390 5.390 21 C 0.180 3.820 22 C -0.126 4.126 23 C -0.116 4.116 24 C -0.140 4.140 25 C -0.111 4.111 26 C -0.126 4.126 27 C -0.096 4.096 28 C 0.076 3.924 29 C 0.066 3.934 30 C -0.175 4.175 31 C -0.190 4.190 32 H 0.271 0.729 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.193 0.807 36 H 0.251 0.749 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.142 0.858 44 H 0.175 0.825 45 H 0.138 0.862 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.110 0.890 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.007 4.651 -10.580 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.162 4.162 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.165 1.165 7 C -0.579 4.579 8 H 0.061 0.939 9 C 0.074 3.926 10 N -0.288 5.288 11 C 0.358 3.642 12 O -0.445 6.445 13 C -0.253 4.253 14 C 0.009 3.991 15 N -0.243 5.243 16 C 0.071 3.929 17 C -0.261 4.261 18 C -0.085 4.085 19 N -0.061 5.061 20 N -0.179 5.179 21 C 0.060 3.940 22 C -0.127 4.127 23 C -0.135 4.135 24 C -0.158 4.158 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.114 4.114 28 C 0.047 3.953 29 C -0.038 4.038 30 C -0.213 4.213 31 C -0.228 4.228 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.209 0.791 36 H 0.266 0.734 37 H 0.144 0.856 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.145 0.855 41 H 0.166 0.834 42 H 0.171 0.829 43 H 0.159 0.841 44 H 0.192 0.808 45 H 0.156 0.844 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.129 0.871 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.573 5.691 -11.990 21.232 hybrid contribution -0.713 -0.207 1.295 1.493 sum 15.860 5.484 -10.695 19.900 Atomic orbital electron populations 1.69997 1.08042 1.28516 1.49753 1.25564 0.95249 1.02119 0.93240 0.86212 0.80240 0.79930 0.80035 1.18504 1.20393 1.16470 1.21340 0.90499 0.93697 1.52345 0.93949 1.20365 0.93601 0.79371 0.99260 1.47202 1.58904 1.14594 1.08139 1.18058 0.77008 0.86451 0.82722 1.90547 1.54051 1.15843 1.84099 1.20664 1.02511 1.02334 0.99793 1.24429 0.97121 0.86923 0.90668 1.66878 1.22503 1.31019 1.03854 1.19632 0.92166 0.91940 0.89193 1.20682 1.02127 1.02236 1.01010 1.25797 0.98802 0.95510 0.88426 1.76644 0.98388 1.09486 1.21551 1.48439 1.24456 1.28260 1.16774 1.20655 0.94760 0.78952 0.99648 1.20098 0.98960 0.96639 0.96995 1.21251 1.00004 0.96328 0.95915 1.21396 0.97777 0.95894 1.00704 1.21542 0.95577 1.00474 0.95334 1.21517 1.00553 0.95661 0.96608 1.21304 0.94477 0.95594 1.00071 1.21244 0.93048 0.93790 0.87203 1.21806 1.06813 0.87198 0.87953 1.23788 0.93920 0.98516 1.05043 1.23119 0.96560 1.00770 1.02401 0.91940 0.93872 0.92450 0.79068 0.73356 0.85601 0.88783 0.87817 0.85513 0.83421 0.82949 0.84055 0.80780 0.84400 0.86372 0.86556 0.87139 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.78 13.96 21.45 0.30 -53.48 16 2 C 0.04 2.13 5.45 84.65 0.46 2.60 16 3 Si 0.91 40.05 27.47 68.60 1.88 41.93 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.24 -9.69 6.54 99.48 0.65 -9.03 16 7 C -0.54 -28.30 8.16 25.60 0.21 -28.09 16 8 H 0.04 2.55 8.06 -2.91 -0.02 2.52 16 9 C 0.20 8.54 3.78 85.63 0.32 8.86 16 10 N -0.56 -22.92 2.86 -805.71 -2.30 -25.22 16 11 C 0.57 22.73 7.23 86.74 0.63 23.36 16 12 O -0.56 -22.96 12.57 -3.95 -0.05 -23.01 16 13 C -0.25 -9.15 5.52 -20.00 -0.11 -9.26 16 14 C 0.18 7.24 8.58 85.26 0.73 7.97 16 15 N -0.53 -20.77 10.37 -192.10 -1.99 -22.76 16 16 C 0.31 10.49 7.96 134.18 1.07 11.56 16 17 C -0.25 -7.17 6.36 -20.24 -0.13 -7.30 16 18 C 0.11 2.34 12.30 86.94 1.07 3.41 16 19 N -0.25 -6.10 12.39 -53.08 -0.66 -6.76 16 20 N -0.39 -11.14 3.61 -348.70 -1.26 -12.40 16 21 C 0.18 4.41 6.53 85.64 0.56 4.97 16 22 C -0.13 -3.13 5.46 -19.86 -0.11 -3.23 16 23 C -0.12 -3.31 9.70 22.27 0.22 -3.09 16 24 C -0.14 -3.43 10.05 22.27 0.22 -3.21 16 25 C -0.11 -2.14 10.05 22.27 0.22 -1.92 16 26 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 27 C -0.10 -1.93 9.70 22.27 0.22 -1.71 16 28 C 0.08 2.24 9.79 22.92 0.22 2.47 16 29 C 0.07 2.40 6.53 44.99 0.29 2.69 16 30 C -0.18 -5.46 9.63 30.62 0.29 -5.16 16 31 C -0.19 -6.63 9.88 30.62 0.30 -6.33 16 32 H 0.27 14.79 8.31 -92.71 -0.77 14.01 16 33 H 0.04 1.81 7.20 -2.39 -0.02 1.79 16 34 H 0.06 2.50 3.28 -2.47 -0.01 2.49 16 35 H 0.19 8.94 3.74 -2.91 -0.01 8.93 16 36 H 0.25 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.13 2.34 8.09 -2.39 -0.02 2.32 16 38 H 0.09 2.48 8.08 -2.39 -0.02 2.46 16 39 H 0.10 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 42 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 43 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 44 H 0.17 4.08 8.02 -2.92 -0.02 4.05 16 45 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 46 H 0.12 4.12 5.22 -5.42 -0.03 4.09 16 47 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 48 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 49 H 0.07 2.70 7.60 -2.39 -0.02 2.68 16 Total: -1.00 -69.39 407.04 3.77 -65.62 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: 0.93 Total: 39.49 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 6.92 Total: -3.41 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -5.91 Total: -120.61 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.05 Total: -23.01 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.88 Total: 41.93 kcal Total: -69.39 3.77 -65.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084544534.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.985 kcal (2) G-P(sol) polarization free energy of solvation -69.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds