Wall clock time and date at job start Tue Mar 31 2020 05:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34573 * 125.42671 * 2 1 4 4 C 1.46554 * 106.47427 * 179.97438 * 3 2 1 5 5 C 1.47240 * 127.01129 * 180.02562 * 4 3 2 6 6 O 1.21916 * 120.00079 * 179.97438 * 5 4 3 7 7 C 1.41600 * 119.99954 * 359.97438 * 5 4 3 8 8 H 1.08007 * 120.00039 * 353.67016 * 7 5 4 9 9 C 1.40317 * 120.00015 * 173.66300 * 7 5 4 10 10 N 1.30538 * 119.99541 * 6.23461 * 9 7 5 11 11 Si 1.86795 * 120.00005 * 186.23065 * 9 7 5 12 12 H 1.48498 * 109.47109 * 94.98825 * 11 9 7 13 13 H 1.48498 * 109.47014 * 214.98975 * 11 9 7 14 14 H 1.48501 * 109.47183 * 334.98720 * 11 9 7 15 15 C 1.38585 * 105.97261 * 0.02562 * 4 3 2 16 16 C 1.50705 * 125.94455 * 180.02562 * 15 4 3 17 17 N 1.34757 * 108.11094 * 359.75407 * 15 4 3 18 18 C 1.40202 * 124.84994 * 180.23482 * 17 15 4 19 19 C 1.38870 * 120.01143 * 64.95063 * 18 17 15 20 20 C 1.38058 * 119.98350 * 179.76492 * 19 18 17 21 21 C 1.38757 * 120.01180 * 0.50375 * 20 19 18 22 22 O 1.35939 * 119.98386 * 179.76665 * 21 20 19 23 23 C 1.42895 * 117.00361 * 359.97438 * 22 21 20 24 24 C 1.50697 * 109.47387 * 179.97438 * 23 22 21 25 25 C 1.38236 * 120.00352 * 269.73016 * 24 23 22 26 26 C 1.38231 * 119.99839 * 179.76755 * 25 24 23 27 27 C 1.38235 * 120.00209 * 0.48133 * 26 25 24 28 28 C 1.38231 * 119.99881 * 359.79133 * 27 26 25 29 29 C 1.38236 * 119.99688 * 89.99869 * 24 23 22 30 30 C 1.38763 * 120.02931 * 359.74775 * 21 20 19 31 31 C 1.38052 * 120.00892 * 359.97438 * 30 21 20 32 32 H 1.08993 * 109.47166 * 90.01787 * 1 2 3 33 33 H 1.08998 * 109.46995 * 330.01890 * 1 2 3 34 34 H 1.08999 * 109.47096 * 210.02160 * 1 2 3 35 35 H 1.08001 * 126.76092 * 0.02562 * 3 2 1 36 36 H 0.96998 * 119.99774 * 179.97438 * 10 9 7 37 37 H 1.09008 * 109.47112 * 89.97339 * 16 15 4 38 38 H 1.08994 * 109.47308 * 209.97444 * 16 15 4 39 39 H 1.09003 * 109.46999 * 329.97522 * 16 15 4 40 40 H 1.08000 * 120.00680 * 359.97438 * 19 18 17 41 41 H 1.08000 * 119.99081 * 180.22807 * 20 19 18 42 42 H 1.08999 * 109.47511 * 300.00426 * 23 22 21 43 43 H 1.09006 * 109.46953 * 59.99499 * 23 22 21 44 44 H 1.07998 * 119.99632 * 359.97438 * 25 24 23 45 45 H 1.08002 * 119.99434 * 180.25523 * 26 25 24 46 46 H 1.07999 * 119.99904 * 179.77048 * 27 26 25 47 47 H 1.07997 * 120.00020 * 179.97438 * 28 27 26 48 48 H 1.07996 * 120.00559 * 0.02562 * 29 24 23 49 49 H 1.07993 * 119.99657 * 179.97438 * 30 21 20 50 50 H 1.08000 * 120.00403 * 180.02562 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2871 1.0966 0.0000 4 6 3.6732 0.6206 0.0006 5 6 4.8934 1.4447 0.0014 6 8 5.9895 0.9110 0.0023 7 6 4.7937 2.8572 0.0010 8 1 3.8284 3.3304 -0.1029 9 6 5.9490 3.6421 0.1359 10 7 7.1254 3.0765 0.1392 11 14 5.8033 5.4962 0.3104 12 1 5.8165 5.8604 1.7500 13 1 6.9468 6.1493 -0.3760 14 1 4.5309 5.9528 -0.3041 15 6 3.6012 -0.7634 0.0004 16 6 4.7736 -1.7103 0.0014 17 7 2.3003 -1.1151 0.0051 18 6 1.8273 -2.4349 0.0111 19 6 2.0752 -3.2567 1.1028 20 6 1.6050 -4.5547 1.1102 21 6 0.8938 -5.0414 0.0227 22 8 0.4351 -6.3211 0.0285 23 6 0.7222 -7.1079 1.1863 24 6 0.1391 -8.4868 1.0138 25 6 -1.1477 -8.7518 1.4437 26 6 -1.6842 -10.0154 1.2811 27 6 -0.9304 -11.0165 0.6977 28 6 0.3584 -10.7530 0.2730 29 6 0.8931 -9.4880 0.4308 30 6 0.6503 -4.2224 -1.0707 31 6 1.1151 -2.9225 -1.0767 32 1 -0.3633 -0.0003 -1.0276 33 1 -0.3633 0.8901 0.5135 34 1 -0.3633 -0.8898 0.5142 35 1 1.9567 2.1248 0.0004 36 1 7.9241 3.6191 0.2321 37 1 5.0556 -1.9383 1.0293 38 1 4.4975 -2.6310 -0.5124 39 1 5.6158 -1.2462 -0.5120 40 1 2.6328 -2.8794 1.9473 41 1 1.7945 -5.1927 1.9607 42 1 1.8018 -7.1832 1.3160 43 1 0.2829 -6.6352 2.0648 44 1 -1.7350 -7.9708 1.9035 45 1 -2.6910 -10.2213 1.6133 46 1 -1.3483 -12.0047 0.5741 47 1 0.9474 -11.5352 -0.1824 48 1 1.9001 -9.2823 0.0992 49 1 0.0971 -4.6019 -1.9170 50 1 0.9252 -2.2850 -1.9276 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085396871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:31 Heat of formation + Delta-G solvation = 20.136533 kcal Electronic energy + Delta-G solvation = -31877.197223 eV Core-core repulsion = 27607.331465 eV Total energy + Delta-G solvation = -4269.865758 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.162 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.13056 -40.29786 -39.35654 -37.43781 -36.10131 -32.91240 -32.59766 -32.06873 -31.59145 -31.38190 -31.15593 -28.62404 -28.31913 -26.95638 -26.31995 -23.84349 -23.21209 -23.07082 -22.70015 -21.54243 -20.95860 -19.45293 -18.56472 -18.03536 -17.44544 -16.42307 -16.41655 -16.30708 -15.69272 -15.48792 -15.03011 -14.95508 -14.78722 -14.41949 -13.88360 -13.86734 -13.77462 -13.55806 -13.29516 -13.23167 -13.00122 -12.83963 -12.74335 -12.64301 -12.61807 -12.24143 -11.81377 -11.72028 -11.64346 -11.60364 -11.53653 -11.44653 -11.23092 -11.13700 -10.98204 -10.77566 -10.60629 -10.21932 -9.97632 -9.39239 -9.35122 -9.26901 -8.82696 -8.51140 -7.60370 -7.26318 -6.99984 -6.12833 -4.68138 0.73001 0.93248 1.04958 1.10385 2.75707 2.80788 3.11403 3.21818 3.25811 3.36719 3.39383 3.48861 3.49619 4.14348 4.21410 4.29801 4.51488 4.56907 4.63667 4.67754 4.70102 4.71897 4.81791 5.01636 5.05104 5.12843 5.15465 5.24796 5.42015 5.46296 5.52135 5.55616 5.70838 5.75750 5.82549 5.87762 5.95177 5.96750 6.02278 6.03310 6.05567 6.07631 6.09015 6.21463 6.35629 6.39659 6.42013 6.49102 6.69508 6.89095 6.95960 7.06760 7.11136 7.41101 7.83829 7.93123 8.15734 8.28964 8.99183 9.11208 10.51150 10.76776 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.001531 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.664692 B =18278.874340 C =19000.727477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.018 4.018 3 C -0.151 4.151 4 C -0.179 4.179 5 C 0.422 3.578 6 O -0.549 6.549 7 C -0.516 4.516 8 H 0.070 0.930 9 C 0.082 3.918 10 N -0.742 5.742 11 Si 0.902 3.098 12 H -0.271 1.271 13 H -0.278 1.278 14 H -0.262 1.262 15 C 0.042 3.958 16 C -0.074 4.074 17 N -0.405 5.405 18 C 0.098 3.902 19 C -0.071 4.071 20 C -0.197 4.197 21 C 0.128 3.872 22 O -0.308 6.308 23 C 0.100 3.900 24 C -0.095 4.095 25 C -0.095 4.095 26 C -0.124 4.124 27 C -0.111 4.111 28 C -0.124 4.124 29 C -0.095 4.095 30 C -0.139 4.139 31 C -0.073 4.073 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.139 0.861 36 H 0.270 0.730 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.101 0.899 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.136 0.864 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.565 -24.332 2.131 30.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.123 4.123 3 C -0.176 4.176 4 C -0.186 4.186 5 C 0.318 3.682 6 O -0.440 6.440 7 C -0.548 4.548 8 H 0.088 0.912 9 C -0.140 4.140 10 N -0.372 5.372 11 Si 0.727 3.273 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.186 1.186 15 C -0.067 4.067 16 C -0.132 4.132 17 N -0.082 5.082 18 C 0.008 3.992 19 C -0.090 4.090 20 C -0.216 4.216 21 C 0.082 3.918 22 O -0.222 6.222 23 C 0.025 3.975 24 C -0.095 4.095 25 C -0.113 4.113 26 C -0.142 4.142 27 C -0.129 4.129 28 C -0.142 4.142 29 C -0.113 4.113 30 C -0.158 4.158 31 C -0.092 4.092 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.157 0.843 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.119 0.881 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.142 0.858 47 H 0.143 0.857 48 H 0.143 0.857 49 H 0.154 0.846 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.084 -24.996 2.000 30.342 hybrid contribution -0.182 1.018 0.357 1.094 sum -17.266 -23.979 2.357 29.642 Atomic orbital electron populations 1.20190 0.89021 1.02255 1.01648 1.20139 0.92633 0.85402 1.14094 1.21888 0.92224 0.96613 1.06867 1.22667 0.96319 0.91203 1.08453 1.17356 0.84669 0.88252 0.77943 1.90470 1.28372 1.75382 1.49751 1.20791 0.93896 0.93055 1.47039 0.91192 1.25968 0.94891 1.00277 0.92901 1.69985 0.98311 1.36759 1.32110 0.86438 0.78866 0.83054 0.78976 1.19669 1.20374 1.18604 1.20955 0.82886 0.94947 1.07905 1.20321 0.95324 0.95546 1.01963 1.40837 1.05507 1.02219 1.59653 1.17653 1.01405 0.85071 0.95103 1.21074 0.97903 0.92952 0.97075 1.21096 1.04141 0.97065 0.99330 1.19003 0.94321 0.83875 0.94563 1.86149 1.73827 1.20916 1.41273 1.21605 1.00233 0.88019 0.87641 1.19491 0.95125 0.93712 1.01200 1.21109 0.94282 0.97128 0.98830 1.21177 1.00103 0.93160 0.99760 1.21258 0.94484 0.99353 0.97821 1.21186 0.95847 0.96851 1.00269 1.21127 1.00064 0.92886 0.97217 1.20264 1.04703 0.92696 0.98174 1.21069 0.96520 0.94622 0.97028 0.91991 0.90719 0.92699 0.84289 0.91905 0.92092 0.93741 0.88077 0.84998 0.84928 0.90867 0.90942 0.85740 0.85711 0.85839 0.85679 0.85676 0.84595 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 9.81 36.01 0.35 -0.64 16 2 C -0.02 -0.32 6.76 -81.65 -0.55 -0.88 16 3 C -0.15 -3.24 10.39 -37.53 -0.39 -3.63 16 4 C -0.18 -4.50 6.30 -102.76 -0.65 -5.14 16 5 C 0.42 12.45 6.91 -34.64 -0.24 12.21 16 6 O -0.55 -17.64 13.48 5.00 0.07 -17.57 16 7 C -0.52 -14.87 9.02 -37.52 -0.34 -15.21 16 8 H 0.07 1.88 7.07 -52.48 -0.37 1.50 16 9 C 0.08 2.28 5.49 -17.32 -0.10 2.18 16 10 N -0.74 -21.95 11.75 55.56 0.65 -21.29 16 11 Si 0.90 20.04 29.57 -169.99 -5.03 15.01 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 15 C 0.04 0.93 6.86 -81.18 -0.56 0.37 16 16 C -0.07 -1.49 9.29 36.01 0.33 -1.16 16 17 N -0.41 -7.51 2.74 -52.03 -0.14 -7.65 16 18 C 0.10 1.48 4.43 -83.56 -0.37 1.11 16 19 C -0.07 -0.95 9.59 -39.41 -0.38 -1.32 16 20 C -0.20 -2.15 9.03 -39.46 -0.36 -2.51 16 21 C 0.13 1.42 6.69 -39.20 -0.26 1.16 16 22 O -0.31 -3.21 10.12 -19.55 -0.20 -3.40 16 23 C 0.10 0.78 4.86 36.00 0.18 0.95 16 24 C -0.10 -0.75 5.51 -104.62 -0.58 -1.32 16 25 C -0.10 -0.68 9.70 -39.58 -0.38 -1.07 16 26 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 27 C -0.11 -0.67 10.05 -39.58 -0.40 -1.07 16 28 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 29 C -0.09 -0.70 9.70 -39.58 -0.38 -1.08 16 30 C -0.14 -1.58 9.98 -39.46 -0.39 -1.97 16 31 C -0.07 -0.95 9.62 -39.42 -0.38 -1.33 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.69 7.75 -51.93 -0.40 0.29 16 35 H 0.14 2.80 7.58 -52.49 -0.40 2.40 16 36 H 0.27 7.17 8.29 -40.82 -0.34 6.84 16 37 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 38 H 0.04 0.77 7.77 -51.93 -0.40 0.37 16 39 H 0.10 2.33 6.54 -51.93 -0.34 1.99 16 40 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.13 1.11 6.29 -52.49 -0.33 0.78 16 42 H 0.07 0.50 7.60 -51.93 -0.39 0.10 16 43 H 0.07 0.48 7.60 -51.93 -0.39 0.08 16 44 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 46 H 0.12 0.48 8.06 -52.49 -0.42 0.06 16 47 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 48 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 49 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 50 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 424.44 15.07 6.40 6.40 Total: -1.00 -35.51 424.44 -11.70 -47.21 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.82 Total: 4.02 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -6.63 Total: -22.72 kcal Atomic # 7 Polarization: -29.45 SS G_CDS: 0.51 Total: -28.94 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.13 Total: -20.97 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -35.51 -11.70 -47.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085396871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.344 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds