Wall clock time and date at job start Tue Mar 31 2020 05:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34573 * 125.42671 * 2 1 4 4 C 1.46554 * 106.47427 * 179.97438 * 3 2 1 5 5 C 1.47240 * 127.01129 * 180.02562 * 4 3 2 6 6 O 1.21916 * 120.00079 * 179.97438 * 5 4 3 7 7 C 1.41600 * 119.99954 * 359.97438 * 5 4 3 8 8 H 1.08007 * 120.00039 * 353.67016 * 7 5 4 9 9 C 1.40317 * 120.00015 * 173.66300 * 7 5 4 10 10 N 1.30538 * 119.99541 * 6.23461 * 9 7 5 11 11 Si 1.86795 * 120.00005 * 186.23065 * 9 7 5 12 12 H 1.48498 * 109.47109 * 94.98825 * 11 9 7 13 13 H 1.48498 * 109.47014 * 214.98975 * 11 9 7 14 14 H 1.48501 * 109.47183 * 334.98720 * 11 9 7 15 15 C 1.38585 * 105.97261 * 0.02562 * 4 3 2 16 16 C 1.50705 * 125.94455 * 180.02562 * 15 4 3 17 17 N 1.34757 * 108.11094 * 359.75407 * 15 4 3 18 18 C 1.40202 * 124.84994 * 180.23482 * 17 15 4 19 19 C 1.38870 * 120.01143 * 64.95063 * 18 17 15 20 20 C 1.38058 * 119.98350 * 179.76492 * 19 18 17 21 21 C 1.38757 * 120.01180 * 0.50375 * 20 19 18 22 22 O 1.35939 * 119.98386 * 179.76665 * 21 20 19 23 23 C 1.42895 * 117.00361 * 359.97438 * 22 21 20 24 24 C 1.50697 * 109.47387 * 179.97438 * 23 22 21 25 25 C 1.38236 * 120.00352 * 269.73016 * 24 23 22 26 26 C 1.38231 * 119.99839 * 179.76755 * 25 24 23 27 27 C 1.38235 * 120.00209 * 0.48133 * 26 25 24 28 28 C 1.38231 * 119.99881 * 359.79133 * 27 26 25 29 29 C 1.38236 * 119.99688 * 89.99869 * 24 23 22 30 30 C 1.38763 * 120.02931 * 359.74775 * 21 20 19 31 31 C 1.38052 * 120.00892 * 359.97438 * 30 21 20 32 32 H 1.08993 * 109.47166 * 90.01787 * 1 2 3 33 33 H 1.08998 * 109.46995 * 330.01890 * 1 2 3 34 34 H 1.08999 * 109.47096 * 210.02160 * 1 2 3 35 35 H 1.08001 * 126.76092 * 0.02562 * 3 2 1 36 36 H 0.96998 * 119.99774 * 179.97438 * 10 9 7 37 37 H 1.09008 * 109.47112 * 89.97339 * 16 15 4 38 38 H 1.08994 * 109.47308 * 209.97444 * 16 15 4 39 39 H 1.09003 * 109.46999 * 329.97522 * 16 15 4 40 40 H 1.08000 * 120.00680 * 359.97438 * 19 18 17 41 41 H 1.08000 * 119.99081 * 180.22807 * 20 19 18 42 42 H 1.08999 * 109.47511 * 300.00426 * 23 22 21 43 43 H 1.09006 * 109.46953 * 59.99499 * 23 22 21 44 44 H 1.07998 * 119.99632 * 359.97438 * 25 24 23 45 45 H 1.08002 * 119.99434 * 180.25523 * 26 25 24 46 46 H 1.07999 * 119.99904 * 179.77048 * 27 26 25 47 47 H 1.07997 * 120.00020 * 179.97438 * 28 27 26 48 48 H 1.07996 * 120.00559 * 0.02562 * 29 24 23 49 49 H 1.07993 * 119.99657 * 179.97438 * 30 21 20 50 50 H 1.08000 * 120.00403 * 180.02562 * 31 30 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2871 1.0966 0.0000 4 6 3.6732 0.6206 0.0006 5 6 4.8934 1.4447 0.0014 6 8 5.9895 0.9110 0.0023 7 6 4.7937 2.8572 0.0010 8 1 3.8284 3.3304 -0.1029 9 6 5.9490 3.6421 0.1359 10 7 7.1254 3.0765 0.1392 11 14 5.8033 5.4962 0.3104 12 1 5.8165 5.8604 1.7500 13 1 6.9468 6.1493 -0.3760 14 1 4.5309 5.9528 -0.3041 15 6 3.6012 -0.7634 0.0004 16 6 4.7736 -1.7103 0.0014 17 7 2.3003 -1.1151 0.0051 18 6 1.8273 -2.4349 0.0111 19 6 2.0752 -3.2567 1.1028 20 6 1.6050 -4.5547 1.1102 21 6 0.8938 -5.0414 0.0227 22 8 0.4351 -6.3211 0.0285 23 6 0.7222 -7.1079 1.1863 24 6 0.1391 -8.4868 1.0138 25 6 -1.1477 -8.7518 1.4437 26 6 -1.6842 -10.0154 1.2811 27 6 -0.9304 -11.0165 0.6977 28 6 0.3584 -10.7530 0.2730 29 6 0.8931 -9.4880 0.4308 30 6 0.6503 -4.2224 -1.0707 31 6 1.1151 -2.9225 -1.0767 32 1 -0.3633 -0.0003 -1.0276 33 1 -0.3633 0.8901 0.5135 34 1 -0.3633 -0.8898 0.5142 35 1 1.9567 2.1248 0.0004 36 1 7.9241 3.6191 0.2321 37 1 5.0556 -1.9383 1.0293 38 1 4.4975 -2.6310 -0.5124 39 1 5.6158 -1.2462 -0.5120 40 1 2.6328 -2.8794 1.9473 41 1 1.7945 -5.1927 1.9607 42 1 1.8018 -7.1832 1.3160 43 1 0.2829 -6.6352 2.0648 44 1 -1.7350 -7.9708 1.9035 45 1 -2.6910 -10.2213 1.6133 46 1 -1.3483 -12.0047 0.5741 47 1 0.9474 -11.5352 -0.1824 48 1 1.9001 -9.2823 0.0992 49 1 0.0971 -4.6019 -1.9170 50 1 0.9252 -2.2850 -1.9276 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085396871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:29 Heat of formation + Delta-G solvation = 2.754780 kcal Electronic energy + Delta-G solvation = -31877.950953 eV Core-core repulsion = 27607.331465 eV Total energy + Delta-G solvation = -4270.619488 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.162 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.49533 -41.16578 -39.98616 -38.62162 -38.01088 -34.71469 -33.84121 -33.32501 -32.80755 -32.14180 -31.83517 -30.14502 -29.66250 -28.42566 -27.36929 -25.49332 -24.16652 -23.87901 -23.53189 -22.58643 -22.13524 -20.98228 -19.76231 -19.27226 -18.26684 -17.99708 -17.46183 -17.14660 -17.04889 -16.81942 -16.14983 -15.85083 -15.57405 -15.47361 -15.31923 -14.94761 -14.81605 -14.68160 -14.47926 -14.31323 -14.11020 -14.04121 -13.93892 -13.75092 -13.62690 -13.50356 -13.39894 -13.35957 -13.13039 -12.90847 -12.84315 -12.68245 -12.40526 -12.18325 -12.10488 -12.07986 -11.88995 -11.84310 -11.80717 -10.92340 -10.20407 -9.86413 -9.83964 -9.69251 -9.46262 -9.01218 -8.68162 -8.24623 -6.92984 0.03078 0.16436 0.22959 0.46206 1.07731 1.38440 1.40967 1.55873 1.68501 1.95126 2.16091 2.26098 2.51530 2.62470 2.95500 3.58830 3.70583 3.82160 3.82897 3.83607 3.86118 4.03912 4.09931 4.11740 4.22841 4.24219 4.27536 4.32002 4.36335 4.46188 4.51492 4.59332 4.63133 4.68361 4.70762 4.79022 4.82230 4.87921 5.01228 5.02473 5.10942 5.11505 5.12629 5.15364 5.23830 5.28033 5.36109 5.42672 5.49860 5.51261 5.58058 5.58564 6.04627 6.08403 6.15025 6.26459 6.30049 6.70193 6.81375 6.99263 8.39785 8.61715 Molecular weight = 375.16amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.001531 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.664692 B =18278.874340 C =19000.727477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.006 3.994 3 C -0.181 4.181 4 C -0.237 4.237 5 C 0.398 3.602 6 O -0.596 6.596 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.025 3.975 10 N -0.792 5.792 11 Si 0.993 3.007 12 H -0.261 1.261 13 H -0.266 1.266 14 H -0.249 1.249 15 C 0.041 3.959 16 C -0.063 4.063 17 N -0.393 5.393 18 C 0.061 3.939 19 C -0.075 4.075 20 C -0.188 4.188 21 C 0.138 3.862 22 O -0.314 6.314 23 C 0.095 3.905 24 C -0.111 4.111 25 C -0.108 4.108 26 C -0.132 4.132 27 C -0.116 4.116 28 C -0.133 4.133 29 C -0.110 4.110 30 C -0.136 4.136 31 C -0.069 4.069 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.142 0.858 36 H 0.279 0.721 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.125 0.875 41 H 0.159 0.841 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.134 0.866 45 H 0.143 0.857 46 H 0.144 0.856 47 H 0.141 0.859 48 H 0.130 0.870 49 H 0.157 0.843 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.780 -25.855 2.384 33.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 C -0.205 4.205 4 C -0.245 4.245 5 C 0.298 3.702 6 O -0.490 6.490 7 C -0.578 4.578 8 H 0.099 0.901 9 C -0.192 4.192 10 N -0.421 5.421 11 Si 0.811 3.189 12 H -0.185 1.185 13 H -0.191 1.191 14 H -0.172 1.172 15 C -0.071 4.071 16 C -0.121 4.121 17 N -0.068 5.068 18 C -0.028 4.028 19 C -0.094 4.094 20 C -0.207 4.207 21 C 0.092 3.908 22 O -0.228 6.228 23 C 0.021 3.979 24 C -0.112 4.112 25 C -0.126 4.126 26 C -0.149 4.149 27 C -0.134 4.134 28 C -0.150 4.150 29 C -0.128 4.128 30 C -0.155 4.155 31 C -0.088 4.088 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.160 0.840 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.143 0.857 41 H 0.177 0.823 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.152 0.848 45 H 0.161 0.839 46 H 0.162 0.838 47 H 0.159 0.841 48 H 0.148 0.852 49 H 0.174 0.826 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.342 -26.555 2.254 33.527 hybrid contribution 0.698 1.176 0.279 1.396 sum -19.644 -25.379 2.532 32.193 Atomic orbital electron populations 1.20334 0.85028 1.03759 1.03502 1.20800 0.94779 0.84314 1.10198 1.21914 0.91047 0.97957 1.09534 1.22369 0.96441 0.92754 1.12937 1.17992 0.85701 0.89517 0.76986 1.90407 1.30355 1.76264 1.52002 1.21239 0.95053 0.93641 1.47911 0.90132 1.27195 0.93877 1.06694 0.91482 1.70122 0.99574 1.39643 1.32802 0.85088 0.79596 0.74662 0.79509 1.18515 1.19096 1.17239 1.20998 0.84893 0.94228 1.06946 1.20166 0.93743 0.96020 1.02158 1.40910 1.04210 1.04025 1.57609 1.17895 1.04073 0.83717 0.97120 1.21067 0.98142 0.93722 0.96511 1.21283 1.03062 0.96176 1.00151 1.19106 0.93249 0.84225 0.94246 1.86160 1.73534 1.20456 1.42649 1.21822 1.01095 0.87858 0.87168 1.19600 0.95672 0.93781 1.02106 1.21335 0.94299 0.97911 0.99028 1.21482 1.01045 0.92943 0.99468 1.21589 0.94373 1.00334 0.97136 1.21470 0.96352 0.97026 1.00195 1.21332 1.00513 0.93392 0.97561 1.20453 1.04216 0.91904 0.98889 1.21063 0.96034 0.95366 0.96365 0.89811 0.89141 0.91204 0.83993 0.91079 0.91514 0.90876 0.91678 0.85731 0.82306 0.89866 0.89517 0.84837 0.83893 0.83809 0.84097 0.85178 0.82581 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.68 9.81 71.24 0.70 -0.98 16 2 C 0.01 0.21 6.76 40.94 0.28 0.48 16 3 C -0.18 -7.98 10.39 23.60 0.25 -7.74 16 4 C -0.24 -12.63 6.30 -18.66 -0.12 -12.75 16 5 C 0.40 25.21 6.91 25.47 0.18 25.38 16 6 O -0.60 -41.28 13.48 -5.04 -0.07 -41.35 16 7 C -0.55 -33.20 9.02 23.61 0.21 -32.98 16 8 H 0.08 4.51 7.07 -2.91 -0.02 4.49 16 9 C 0.03 1.46 5.49 85.39 0.47 1.93 16 10 N -0.79 -49.08 11.75 21.88 0.26 -48.82 16 11 Si 0.99 41.97 29.57 68.60 2.03 44.00 16 12 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 13 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 14 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 15 C 0.04 1.88 6.86 42.19 0.29 2.17 16 16 C -0.06 -2.68 9.29 71.24 0.66 -2.02 16 17 N -0.39 -14.48 2.74 -318.54 -0.87 -15.36 16 18 C 0.06 1.75 4.43 38.10 0.17 1.92 16 19 C -0.08 -1.89 9.59 22.38 0.21 -1.67 16 20 C -0.19 -3.57 9.03 22.35 0.20 -3.37 16 21 C 0.14 2.64 6.69 22.52 0.15 2.79 16 22 O -0.31 -5.61 10.12 -92.86 -0.94 -6.55 16 23 C 0.09 1.22 4.86 71.23 0.35 1.57 16 24 C -0.11 -1.53 5.51 -19.87 -0.11 -1.64 16 25 C -0.11 -1.33 9.70 22.27 0.22 -1.11 16 26 C -0.13 -1.37 10.05 22.27 0.22 -1.14 16 27 C -0.12 -1.15 10.05 22.27 0.22 -0.92 16 28 C -0.13 -1.46 10.05 22.27 0.22 -1.23 16 29 C -0.11 -1.44 9.70 22.27 0.22 -1.22 16 30 C -0.14 -2.66 9.98 22.35 0.22 -2.44 16 31 C -0.07 -1.64 9.62 22.38 0.22 -1.42 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 1.53 7.75 -2.39 -0.02 1.52 16 35 H 0.14 5.92 7.58 -2.91 -0.02 5.90 16 36 H 0.28 15.42 8.29 -92.71 -0.77 14.65 16 37 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 38 H 0.07 2.58 7.77 -2.39 -0.02 2.56 16 39 H 0.06 3.24 6.54 -2.39 -0.02 3.22 16 40 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 41 H 0.16 2.13 6.29 -2.91 -0.02 2.11 16 42 H 0.08 0.91 7.60 -2.39 -0.02 0.89 16 43 H 0.09 0.87 7.60 -2.38 -0.02 0.85 16 44 H 0.13 1.28 8.06 -2.91 -0.02 1.26 16 45 H 0.14 0.86 8.06 -2.91 -0.02 0.83 16 46 H 0.14 0.74 8.06 -2.91 -0.02 0.71 16 47 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 48 H 0.13 1.44 8.06 -2.91 -0.02 1.41 16 49 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 50 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -83.69 424.44 6.79 -76.91 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.96 Total: 27.54 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 5.43 Total: -36.38 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -0.62 Total: -64.18 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -1.01 Total: -47.89 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -83.69 6.79 -76.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085396871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.660 kcal (2) G-P(sol) polarization free energy of solvation -83.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds