Wall clock time and date at job start Tue Mar 31 2020 06:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42090 * 110.54263 * 2 1 4 4 O 1.42104 * 110.54034 * 223.24855 * 2 1 3 5 5 N 1.65600 * 104.44702 * 111.62798 * 2 1 3 6 6 C 1.46505 * 119.99800 * 269.99795 * 5 2 1 7 7 C 1.53001 * 109.46916 * 265.00496 * 6 5 2 8 8 O 1.42896 * 109.47710 * 64.99884 * 7 6 5 9 9 C 1.35672 * 117.00538 * 179.97438 * 8 7 6 10 10 C 1.39315 * 119.81444 * 359.72913 * 9 8 7 11 11 C 1.36441 * 120.18374 * 179.75692 * 10 9 8 12 12 C 1.40835 * 119.81045 * 0.51716 * 11 10 9 13 13 C 1.41212 * 120.18029 * 179.71921 * 12 11 10 14 14 H 1.07996 * 120.00520 * 204.55639 * 13 12 11 15 15 C 1.39896 * 119.99839 * 24.55405 * 13 12 11 16 16 N 1.30879 * 120.00303 * 17.93960 * 15 13 12 17 17 Si 1.86798 * 120.00052 * 197.93556 * 15 13 12 18 18 H 1.48502 * 109.47028 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47111 * 119.99993 * 17 15 13 20 20 H 1.48500 * 109.47046 * 240.00473 * 17 15 13 21 21 C 1.40836 * 119.64202 * 359.73034 * 12 11 10 22 22 C 1.36437 * 119.81108 * 0.02562 * 21 12 11 23 23 C 1.46495 * 120.00221 * 90.00076 * 5 2 1 24 24 C 1.50694 * 109.47118 * 264.99680 * 23 5 2 25 25 C 1.38228 * 119.62095 * 95.02033 * 24 23 5 26 26 C 1.38627 * 119.16392 * 179.74570 * 25 24 23 27 27 C 1.38676 * 118.41942 * 0.47681 * 26 25 24 28 28 C 1.38179 * 119.16388 * 359.50222 * 27 26 25 29 29 N 1.31859 * 119.62091 * 274.99663 * 24 23 5 30 30 H 1.08995 * 109.46987 * 316.74751 * 1 2 3 31 31 H 1.08999 * 109.46860 * 76.74917 * 1 2 3 32 32 H 1.08996 * 109.47008 * 196.75121 * 1 2 3 33 33 H 1.09001 * 109.47458 * 24.99870 * 6 5 2 34 34 H 1.08996 * 109.47101 * 145.00743 * 6 5 2 35 35 H 1.09006 * 109.47172 * 185.00260 * 7 6 5 36 36 H 1.09004 * 109.47190 * 304.99419 * 7 6 5 37 37 H 1.07997 * 119.91045 * 0.02562 * 10 9 8 38 38 H 1.07998 * 120.09237 * 180.24993 * 11 10 9 39 39 H 0.96991 * 120.00579 * 180.02562 * 16 15 13 40 40 H 1.07997 * 120.09478 * 179.97438 * 21 12 11 41 41 H 1.08003 * 119.90685 * 179.97438 * 22 21 12 42 42 H 1.09002 * 109.47007 * 144.99409 * 23 5 2 43 43 H 1.08999 * 109.47517 * 24.99786 * 23 5 2 44 44 H 1.08004 * 120.41531 * 359.96077 * 25 24 23 45 45 H 1.07996 * 120.79282 * 180.23122 * 26 25 24 46 46 H 1.08003 * 120.41906 * 179.78442 * 27 26 25 47 47 H 1.07996 * 119.61900 * 180.25311 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3305 0.0000 4 8 2.3127 -0.9693 -0.9117 5 7 2.2272 -0.5911 1.4907 6 6 2.4100 0.3270 2.6178 7 6 3.8924 0.6814 2.7515 8 8 4.3138 1.4111 1.5974 9 6 5.6115 1.8048 1.5575 10 6 6.4618 1.4968 2.6173 11 6 7.7694 1.8848 2.5827 12 6 8.2561 2.6080 1.4766 13 6 9.6066 3.0186 1.4355 14 1 9.8942 3.8703 0.8369 15 6 10.5721 2.3220 2.1701 16 7 10.3184 1.1137 2.6042 17 14 12.2236 3.1166 2.5315 18 1 12.2599 4.4761 1.9352 19 1 12.4142 3.2158 4.0009 20 1 13.3094 2.2897 1.9462 21 6 7.3886 2.9197 0.4118 22 6 6.0850 2.5200 0.4597 23 6 2.4100 -2.0319 1.6825 24 6 1.1288 -2.6368 2.1960 25 6 0.2348 -3.2011 1.3055 26 6 -0.9384 -3.7596 1.7887 27 6 -1.1742 -3.7206 3.1547 28 6 -0.2339 -3.1397 3.9841 29 7 0.8738 -2.6221 3.4896 30 1 -0.3633 0.7485 0.7041 31 1 -0.3633 0.2356 -1.0003 32 1 -0.3633 -0.9840 0.2962 33 1 1.8336 1.2355 2.4435 34 1 2.0665 -0.1510 3.5351 35 1 4.0410 1.2924 3.6419 36 1 4.4785 -0.2337 2.8369 37 1 6.0859 0.9456 3.4666 38 1 8.4282 1.6417 3.4033 39 1 10.9876 0.6309 3.1138 40 1 7.7541 3.4743 -0.4398 41 1 5.4183 2.7586 -0.3558 42 1 3.2081 -2.2039 2.4048 43 1 2.6746 -2.4944 0.7317 44 1 0.4492 -3.2099 0.2470 45 1 -1.6535 -4.2108 1.1169 46 1 -2.0793 -4.1429 3.5656 47 1 -0.4082 -3.1090 5.0494 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089484415.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:47 Heat of formation + Delta-G solvation = -36.857036 kcal Electronic energy + Delta-G solvation = -32035.640007 eV Core-core repulsion = 27697.487768 eV Total energy + Delta-G solvation = -4338.152239 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.61652 -38.70680 -37.07433 -36.98577 -35.83134 -35.73959 -33.25806 -32.87164 -32.23327 -29.77163 -29.65059 -29.44240 -28.55701 -26.42427 -24.66970 -23.93938 -23.04113 -22.19287 -20.86568 -20.11652 -18.88171 -17.84728 -17.24159 -17.23001 -16.97981 -16.55310 -16.38128 -16.29046 -15.75905 -15.19678 -15.11408 -14.56618 -14.43384 -13.94565 -13.83404 -13.78549 -13.71282 -13.46873 -13.26516 -13.04375 -12.77940 -12.49843 -12.33383 -12.22434 -12.14177 -11.92516 -11.83641 -11.65580 -11.49916 -11.19387 -11.11172 -11.01628 -10.93745 -10.84306 -10.46736 -10.29492 -9.93679 -9.74327 -9.64570 -9.48074 -9.26036 -9.11176 -8.87933 -7.49959 -6.84854 -6.61050 -4.12318 0.18945 0.64858 0.85551 2.54745 2.87158 3.10734 3.14896 3.20576 3.32352 3.41910 3.85227 3.94077 4.03682 4.05519 4.23713 4.34882 4.44251 4.48356 4.63529 4.69080 4.73810 4.78241 4.82893 5.09615 5.18225 5.28626 5.30557 5.41246 5.46373 5.57246 5.69938 5.73823 5.75343 5.81709 5.89263 6.11883 6.26130 6.26997 6.43259 6.48016 6.89413 7.04605 7.19503 7.42434 7.57310 7.60671 7.71499 8.06323 8.13684 8.31002 8.61234 8.80917 9.02733 9.14598 10.33381 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.002139 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.083668 B =13084.693991 C =14095.494061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.686 4.686 2 S 2.600 3.400 3 O -0.909 6.909 4 O -0.955 6.955 5 N -0.982 5.982 6 C 0.131 3.869 7 C 0.045 3.955 8 O -0.304 6.304 9 C -0.001 4.001 10 C -0.178 4.178 11 C -0.134 4.134 12 C 0.084 3.916 13 C -0.464 4.464 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.803 5.803 17 Si 0.905 3.095 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.276 1.276 21 C -0.195 4.195 22 C -0.113 4.113 23 C 0.161 3.839 24 C 0.110 3.890 25 C -0.175 4.175 26 C -0.073 4.073 27 C -0.175 4.175 28 C 0.101 3.899 29 N -0.467 5.467 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.277 0.723 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.828 -10.554 2.122 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.834 4.834 2 S 2.690 3.310 3 O -0.899 6.899 4 O -0.945 6.945 5 N -0.818 5.818 6 C 0.005 3.995 7 C -0.033 4.033 8 O -0.220 6.220 9 C -0.044 4.044 10 C -0.197 4.197 11 C -0.154 4.154 12 C 0.082 3.918 13 C -0.494 4.494 14 H 0.094 0.906 15 C -0.142 4.142 16 N -0.430 5.430 17 Si 0.730 3.270 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.202 1.202 21 C -0.215 4.215 22 C -0.132 4.132 23 C 0.035 3.965 24 C -0.030 4.030 25 C -0.196 4.196 26 C -0.099 4.099 27 C -0.195 4.195 28 C -0.056 4.056 29 N -0.176 5.176 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.137 0.863 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.132 0.868 44 H 0.157 0.843 45 H 0.153 0.847 46 H 0.152 0.848 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -23.652 -10.040 1.991 25.772 hybrid contribution -0.541 -0.569 0.299 0.840 sum -24.193 -10.609 2.291 26.516 Atomic orbital electron populations 1.30794 1.30533 1.11022 1.11059 1.05484 0.77096 0.75083 0.73314 1.93742 1.75613 1.36068 1.84502 1.93580 1.77196 1.62261 1.61499 1.57533 1.83864 1.12437 1.27942 1.21418 0.95853 0.92303 0.89881 1.22881 0.94591 0.96080 0.89759 1.86059 1.25239 1.70713 1.39966 1.18634 0.82682 1.05351 0.97745 1.20621 0.95634 1.05641 0.97810 1.20919 0.93100 1.02254 0.99115 1.17586 0.93032 0.91135 0.90081 1.19467 0.91916 1.12869 1.25173 0.90621 1.25852 1.00543 0.93886 0.93889 1.69855 1.35533 1.09123 1.28443 0.86324 0.81389 0.80505 0.78811 1.18524 1.19913 1.20193 1.20611 0.93444 1.08303 0.99116 1.19666 0.95621 1.01352 0.96557 1.20265 0.92941 0.79593 1.03705 1.21935 0.96846 0.94934 0.89313 1.22182 0.95307 1.00406 1.01667 1.21619 0.96504 0.96051 0.95765 1.22195 1.01221 1.01535 0.94513 1.22847 0.89070 0.93129 1.00544 1.67558 1.20001 1.15549 1.14539 0.85627 0.85648 0.86128 0.89512 0.88222 0.92230 0.92688 0.88878 0.86272 0.91239 0.88395 0.88313 0.87734 0.86844 0.84297 0.84675 0.84768 0.82592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.69 -5.30 10.99 101.05 1.11 -4.19 16 2 S 2.60 32.85 6.01 -107.50 -0.65 32.20 16 3 O -0.91 -15.45 14.89 -65.98 -0.98 -16.43 16 4 O -0.95 -14.40 16.53 -57.54 -0.95 -15.35 16 5 N -0.98 -11.49 2.65 -115.67 -0.31 -11.80 16 6 C 0.13 1.54 5.80 -4.04 -0.02 1.52 16 7 C 0.05 0.72 5.07 37.16 0.19 0.91 16 8 O -0.30 -6.45 7.92 -39.59 -0.31 -6.76 16 9 C 0.00 -0.01 6.71 -38.78 -0.26 -0.27 16 10 C -0.18 -4.34 8.96 -39.83 -0.36 -4.70 16 11 C -0.13 -3.62 8.64 -39.25 -0.34 -3.96 16 12 C 0.08 2.34 5.57 -106.80 -0.60 1.74 16 13 C -0.46 -12.80 9.04 -37.83 -0.34 -13.14 16 14 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 15 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 16 N -0.80 -21.50 10.96 55.55 0.61 -20.89 16 17 Si 0.90 19.36 29.60 -169.99 -5.03 14.33 16 18 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 C -0.20 -5.11 9.74 -39.25 -0.38 -5.49 16 22 C -0.11 -2.85 9.92 -39.83 -0.40 -3.25 16 23 C 0.16 1.68 5.97 -5.20 -0.03 1.65 16 24 C 0.11 1.00 6.36 -82.59 -0.53 0.48 16 25 C -0.18 -1.31 8.05 -39.44 -0.32 -1.63 16 26 C -0.07 -0.44 10.18 -39.28 -0.40 -0.83 16 27 C -0.17 -0.99 10.11 -39.44 -0.40 -1.39 16 28 C 0.10 0.72 11.18 -17.55 -0.20 0.53 16 29 N -0.47 -4.41 10.25 -9.48 -0.10 -4.51 16 30 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.12 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.12 0.79 6.37 -51.93 -0.33 0.46 16 33 H 0.09 0.95 7.61 -51.93 -0.40 0.56 16 34 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.06 0.91 7.63 -51.93 -0.40 0.51 16 36 H 0.05 0.88 7.60 -51.93 -0.39 0.49 16 37 H 0.09 2.00 6.27 -52.49 -0.33 1.67 16 38 H 0.12 3.29 6.16 -52.49 -0.32 2.96 16 39 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 40 H 0.10 2.39 8.06 -52.49 -0.42 1.97 16 41 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 42 H 0.10 1.09 8.05 -51.93 -0.42 0.67 16 43 H 0.11 1.15 6.72 -51.93 -0.35 0.80 16 44 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 46 H 0.13 0.43 8.06 -52.48 -0.42 0.00 16 47 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -35.79 402.88 -11.29 -47.08 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.29 Total: 6.26 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: -3.35 Total: -30.20 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.21 Total: -37.19 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -2.25 Total: -38.55 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Atomic # 16 Polarization: 32.85 SS G_CDS: -0.65 Total: 32.20 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.79 -11.29 -47.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089484415.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.219 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds