Wall clock time and date at job start Tue Mar 31 2020 06:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42090 * 110.54263 * 2 1 4 4 O 1.42104 * 110.54034 * 223.24855 * 2 1 3 5 5 N 1.65600 * 104.44702 * 111.62798 * 2 1 3 6 6 C 1.46505 * 119.99800 * 269.99795 * 5 2 1 7 7 C 1.53001 * 109.46916 * 265.00496 * 6 5 2 8 8 O 1.42896 * 109.47710 * 64.99884 * 7 6 5 9 9 C 1.35672 * 117.00538 * 179.97438 * 8 7 6 10 10 C 1.39315 * 119.81444 * 359.72913 * 9 8 7 11 11 C 1.36441 * 120.18374 * 179.75692 * 10 9 8 12 12 C 1.40835 * 119.81045 * 0.51716 * 11 10 9 13 13 C 1.41212 * 120.18029 * 179.71921 * 12 11 10 14 14 H 1.07996 * 120.00520 * 204.55639 * 13 12 11 15 15 C 1.39896 * 119.99839 * 24.55405 * 13 12 11 16 16 N 1.30879 * 120.00303 * 17.93960 * 15 13 12 17 17 Si 1.86798 * 120.00052 * 197.93556 * 15 13 12 18 18 H 1.48502 * 109.47028 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47111 * 119.99993 * 17 15 13 20 20 H 1.48500 * 109.47046 * 240.00473 * 17 15 13 21 21 C 1.40836 * 119.64202 * 359.73034 * 12 11 10 22 22 C 1.36437 * 119.81108 * 0.02562 * 21 12 11 23 23 C 1.46495 * 120.00221 * 90.00076 * 5 2 1 24 24 C 1.50694 * 109.47118 * 264.99680 * 23 5 2 25 25 C 1.38228 * 119.62095 * 95.02033 * 24 23 5 26 26 C 1.38627 * 119.16392 * 179.74570 * 25 24 23 27 27 C 1.38676 * 118.41942 * 0.47681 * 26 25 24 28 28 C 1.38179 * 119.16388 * 359.50222 * 27 26 25 29 29 N 1.31859 * 119.62091 * 274.99663 * 24 23 5 30 30 H 1.08995 * 109.46987 * 316.74751 * 1 2 3 31 31 H 1.08999 * 109.46860 * 76.74917 * 1 2 3 32 32 H 1.08996 * 109.47008 * 196.75121 * 1 2 3 33 33 H 1.09001 * 109.47458 * 24.99870 * 6 5 2 34 34 H 1.08996 * 109.47101 * 145.00743 * 6 5 2 35 35 H 1.09006 * 109.47172 * 185.00260 * 7 6 5 36 36 H 1.09004 * 109.47190 * 304.99419 * 7 6 5 37 37 H 1.07997 * 119.91045 * 0.02562 * 10 9 8 38 38 H 1.07998 * 120.09237 * 180.24993 * 11 10 9 39 39 H 0.96991 * 120.00579 * 180.02562 * 16 15 13 40 40 H 1.07997 * 120.09478 * 179.97438 * 21 12 11 41 41 H 1.08003 * 119.90685 * 179.97438 * 22 21 12 42 42 H 1.09002 * 109.47007 * 144.99409 * 23 5 2 43 43 H 1.08999 * 109.47517 * 24.99786 * 23 5 2 44 44 H 1.08004 * 120.41531 * 359.96077 * 25 24 23 45 45 H 1.07996 * 120.79282 * 180.23122 * 26 25 24 46 46 H 1.08003 * 120.41906 * 179.78442 * 27 26 25 47 47 H 1.07996 * 119.61900 * 180.25311 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3305 0.0000 4 8 2.3127 -0.9693 -0.9117 5 7 2.2272 -0.5911 1.4907 6 6 2.4100 0.3270 2.6178 7 6 3.8924 0.6814 2.7515 8 8 4.3138 1.4111 1.5974 9 6 5.6115 1.8048 1.5575 10 6 6.4618 1.4968 2.6173 11 6 7.7694 1.8848 2.5827 12 6 8.2561 2.6080 1.4766 13 6 9.6066 3.0186 1.4355 14 1 9.8942 3.8703 0.8369 15 6 10.5721 2.3220 2.1701 16 7 10.3184 1.1137 2.6042 17 14 12.2236 3.1166 2.5315 18 1 12.2599 4.4761 1.9352 19 1 12.4142 3.2158 4.0009 20 1 13.3094 2.2897 1.9462 21 6 7.3886 2.9197 0.4118 22 6 6.0850 2.5200 0.4597 23 6 2.4100 -2.0319 1.6825 24 6 1.1288 -2.6368 2.1960 25 6 0.2348 -3.2011 1.3055 26 6 -0.9384 -3.7596 1.7887 27 6 -1.1742 -3.7206 3.1547 28 6 -0.2339 -3.1397 3.9841 29 7 0.8738 -2.6221 3.4896 30 1 -0.3633 0.7485 0.7041 31 1 -0.3633 0.2356 -1.0003 32 1 -0.3633 -0.9840 0.2962 33 1 1.8336 1.2355 2.4435 34 1 2.0665 -0.1510 3.5351 35 1 4.0410 1.2924 3.6419 36 1 4.4785 -0.2337 2.8369 37 1 6.0859 0.9456 3.4666 38 1 8.4282 1.6417 3.4033 39 1 10.9876 0.6309 3.1138 40 1 7.7541 3.4743 -0.4398 41 1 5.4183 2.7586 -0.3558 42 1 3.2081 -2.2039 2.4048 43 1 2.6746 -2.4944 0.7317 44 1 0.4492 -3.2099 0.2470 45 1 -1.6535 -4.2108 1.1169 46 1 -2.0793 -4.1429 3.5656 47 1 -0.4082 -3.1090 5.0494 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089484415.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:46 Heat of formation + Delta-G solvation = -59.887362 kcal Electronic energy + Delta-G solvation = -32036.638677 eV Core-core repulsion = 27697.487768 eV Total energy + Delta-G solvation = -4339.150909 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.16053 -40.44660 -38.46289 -38.12067 -37.19948 -36.83697 -35.18139 -33.39454 -32.98172 -31.52158 -31.18898 -30.35794 -30.04066 -27.30370 -26.58705 -24.50169 -24.17192 -22.97540 -22.81346 -21.86852 -19.83902 -19.24587 -18.88046 -18.51158 -17.82627 -17.56494 -17.29333 -16.99577 -16.96910 -16.44550 -16.23136 -16.02248 -15.73825 -15.53349 -14.92646 -14.78366 -14.49191 -14.32019 -14.16529 -14.09445 -13.97583 -13.88892 -13.72334 -13.69027 -13.33422 -13.10577 -13.05742 -13.02297 -12.76780 -12.71099 -12.61669 -12.44934 -12.31587 -12.17969 -11.88943 -11.61847 -11.47323 -11.17999 -10.83264 -10.78933 -10.54795 -10.04114 -9.93670 -9.53660 -8.84898 -8.57152 -6.19223 -0.71839 0.12161 0.38089 0.96853 1.07241 1.39518 1.51923 1.55497 1.65202 2.24311 2.72157 2.75235 2.88227 3.04840 3.19465 3.31802 3.68076 3.73170 3.82629 4.03274 4.04816 4.08893 4.12304 4.18367 4.21109 4.26190 4.34696 4.45187 4.54736 4.56317 4.61916 4.79335 4.81306 4.82961 4.86438 4.91327 5.03584 5.08559 5.18112 5.26792 5.30016 5.40567 5.49670 5.59008 5.70320 5.80338 6.02059 6.08641 6.28329 6.60434 6.86471 6.97674 7.07857 7.17925 8.39703 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.002139 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.083668 B =13084.693991 C =14095.494061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.591 3.409 3 O -0.964 6.964 4 O -0.992 6.992 5 N -0.985 5.985 6 C 0.140 3.860 7 C 0.030 3.970 8 O -0.311 6.311 9 C 0.007 3.993 10 C -0.178 4.178 11 C -0.153 4.153 12 C 0.051 3.949 13 C -0.500 4.500 14 H 0.074 0.926 15 C 0.032 3.968 16 N -0.833 5.833 17 Si 0.984 3.016 18 H -0.259 1.259 19 H -0.263 1.263 20 H -0.267 1.267 21 C -0.206 4.206 22 C -0.128 4.128 23 C 0.161 3.839 24 C 0.095 3.905 25 C -0.183 4.183 26 C -0.073 4.073 27 C -0.166 4.166 28 C 0.088 3.912 29 N -0.493 5.493 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.286 0.714 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.146 0.854 45 H 0.163 0.837 46 H 0.164 0.836 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.545 -11.568 3.145 30.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.687 3.313 3 O -0.954 6.954 4 O -0.983 6.983 5 N -0.820 5.820 6 C 0.015 3.985 7 C -0.047 4.047 8 O -0.226 6.226 9 C -0.038 4.038 10 C -0.197 4.197 11 C -0.172 4.172 12 C 0.049 3.951 13 C -0.530 4.530 14 H 0.092 0.908 15 C -0.181 4.181 16 N -0.461 5.461 17 Si 0.804 3.196 18 H -0.183 1.183 19 H -0.188 1.188 20 H -0.192 1.192 21 C -0.225 4.225 22 C -0.147 4.147 23 C 0.035 3.965 24 C -0.044 4.044 25 C -0.203 4.203 26 C -0.099 4.099 27 C -0.186 4.186 28 C -0.069 4.069 29 N -0.203 5.203 30 H 0.164 0.836 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.116 0.884 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.126 0.874 44 H 0.163 0.837 45 H 0.181 0.819 46 H 0.181 0.819 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -26.342 -11.074 3.011 28.733 hybrid contribution 0.037 -0.398 0.007 0.400 sum -26.305 -11.472 3.018 28.856 Atomic orbital electron populations 1.30468 1.23868 1.13031 1.13322 1.05341 0.79455 0.73480 0.72987 1.93679 1.78416 1.38182 1.85173 1.93527 1.79459 1.62585 1.62718 1.57367 1.84512 1.12917 1.27238 1.21416 0.92830 0.93136 0.91133 1.23343 0.97393 0.95451 0.88500 1.86091 1.23139 1.70952 1.42437 1.18773 0.84093 1.03906 0.96982 1.20829 0.94780 1.05290 0.98763 1.20920 0.94038 1.03393 0.98882 1.17940 0.93899 0.92264 0.90951 1.19698 0.92591 1.13670 1.27039 0.90832 1.26742 1.04394 0.94050 0.92932 1.69901 1.37290 1.10221 1.28645 0.85146 0.76128 0.79332 0.78961 1.18302 1.18806 1.19170 1.20777 0.93893 1.08637 0.99203 1.19875 0.95559 1.01805 0.97425 1.20236 0.94046 0.78972 1.03265 1.21627 0.96627 0.96362 0.89795 1.22311 0.95696 1.00480 1.01835 1.21986 0.96212 0.95200 0.96460 1.22538 1.01635 1.00123 0.94308 1.23263 0.88757 0.93052 1.01799 1.67474 1.21368 1.16770 1.14707 0.83558 0.83395 0.84217 0.88428 0.85618 0.91209 0.93030 0.86221 0.87407 0.90320 0.87620 0.87420 0.88664 0.87447 0.83661 0.81935 0.81889 0.80784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -8.05 10.99 113.37 1.25 -6.81 16 2 S 2.59 64.57 6.01 -56.49 -0.34 64.23 16 3 O -0.96 -33.27 14.89 -119.58 -1.78 -35.05 16 4 O -0.99 -30.60 16.53 -127.65 -2.11 -32.71 16 5 N -0.99 -22.57 2.65 -519.86 -1.38 -23.94 16 6 C 0.14 3.17 5.80 86.38 0.50 3.67 16 7 C 0.03 0.97 5.07 71.98 0.37 1.33 16 8 O -0.31 -13.35 7.92 -69.92 -0.55 -13.90 16 9 C 0.01 0.34 6.71 22.79 0.15 0.49 16 10 C -0.18 -8.86 8.96 22.11 0.20 -8.66 16 11 C -0.15 -8.54 8.64 22.49 0.19 -8.34 16 12 C 0.05 2.99 5.57 -21.28 -0.12 2.87 16 13 C -0.50 -28.55 9.04 23.40 0.21 -28.34 16 14 H 0.07 4.06 7.91 -2.91 -0.02 4.04 16 15 C 0.03 1.70 5.13 85.24 0.44 2.13 16 16 N -0.83 -45.57 10.96 21.82 0.24 -45.33 16 17 Si 0.98 40.05 29.60 68.60 2.03 42.08 16 18 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 19 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 20 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 21 C -0.21 -11.20 9.74 22.48 0.22 -10.98 16 22 C -0.13 -6.65 9.92 22.11 0.22 -6.43 16 23 C 0.16 3.35 5.97 85.63 0.51 3.86 16 24 C 0.09 1.62 6.36 42.55 0.27 1.89 16 25 C -0.18 -2.32 8.05 22.36 0.18 -2.14 16 26 C -0.07 -0.61 10.18 22.47 0.23 -0.38 16 27 C -0.17 -1.28 10.11 22.36 0.23 -1.05 16 28 C 0.09 1.03 11.18 84.67 0.95 1.97 16 29 N -0.49 -8.48 10.25 -183.89 -1.88 -10.37 16 30 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.14 1.30 6.37 -2.39 -0.02 1.29 16 33 H 0.10 2.01 7.61 -2.39 -0.02 1.99 16 34 H 0.13 2.22 8.08 -2.39 -0.02 2.20 16 35 H 0.07 2.07 7.63 -2.38 -0.02 2.05 16 36 H 0.05 1.67 7.60 -2.38 -0.02 1.65 16 37 H 0.12 5.17 6.27 -2.91 -0.02 5.15 16 38 H 0.11 6.18 6.16 -2.91 -0.02 6.16 16 39 H 0.29 14.07 8.30 -92.72 -0.77 13.31 16 40 H 0.11 5.39 8.06 -2.91 -0.02 5.37 16 41 H 0.11 5.29 8.06 -2.91 -0.02 5.27 16 42 H 0.10 2.07 8.05 -2.39 -0.02 2.05 16 43 H 0.11 2.29 6.72 -2.39 -0.02 2.28 16 44 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 46 H 0.16 0.27 8.06 -2.91 -0.02 0.25 16 47 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -81.18 402.88 1.20 -79.98 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.99 Total: 29.91 kcal Atomic # 6 Polarization: -60.89 SS G_CDS: 5.99 Total: -54.90 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -3.02 Total: -79.64 kcal Atomic # 8 Polarization: -77.21 SS G_CDS: -4.44 Total: -81.66 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Atomic # 16 Polarization: 64.57 SS G_CDS: -0.34 Total: 64.23 kcal Total: -81.18 1.20 -79.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089484415.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.091 kcal (2) G-P(sol) polarization free energy of solvation -81.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds