Wall clock time and date at job start Tue Mar 31 2020 05:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47149 * 256.44028 * 3 2 1 5 5 N 1.46499 * 109.47277 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99936 * 84.99719 * 5 4 3 7 7 C 1.50701 * 109.46970 * 85.00357 * 6 5 4 8 8 H 1.08005 * 119.99694 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00052 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00110 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00229 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47250 * 89.99260 * 11 9 7 13 13 H 1.48497 * 109.47067 * 209.99831 * 11 9 7 14 14 H 1.48502 * 109.46618 * 329.99589 * 11 9 7 15 15 S 1.65597 * 119.99926 * 265.27680 * 5 4 3 16 16 O 1.42097 * 104.27740 * 25.79347 * 15 5 4 17 17 O 1.42099 * 104.27794 * 153.65377 * 15 5 4 18 18 C 1.81405 * 104.44719 * 269.72273 * 15 5 4 19 19 C 1.50702 * 109.47027 * 179.97438 * 18 15 5 20 20 C 1.38216 * 119.99032 * 269.72483 * 19 18 15 21 21 C 1.38356 * 120.01540 * 179.76641 * 20 19 18 22 22 Cl 1.73601 * 120.00887 * 180.27860 * 21 20 19 23 23 C 1.38329 * 119.98584 * 0.53232 * 21 20 19 24 24 C 1.38340 * 119.97400 * 359.72295 * 23 21 20 25 25 Cl 1.73595 * 120.00738 * 179.97438 * 24 23 21 26 26 C 1.38224 * 119.98505 * 89.99975 * 19 18 15 27 27 H 1.09005 * 109.46837 * 136.43959 * 3 2 1 28 28 H 1.08995 * 109.47543 * 16.44097 * 3 2 1 29 29 H 1.08991 * 109.46933 * 59.99876 * 4 3 2 30 30 H 1.09000 * 109.46920 * 299.99947 * 4 3 2 31 31 H 1.08999 * 109.46864 * 204.99706 * 6 5 4 32 32 H 1.08999 * 109.46950 * 325.00088 * 6 5 4 33 33 H 0.97000 * 119.99969 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.47064 * 299.99900 * 18 15 5 35 35 H 1.09001 * 109.46878 * 60.00248 * 18 15 5 36 36 H 1.08001 * 119.99320 * 0.02562 * 20 19 18 37 37 H 1.08000 * 120.01695 * 179.70108 * 23 21 20 38 38 H 1.08001 * 119.99075 * 359.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.3391 1.4023 5 7 4.5828 0.3404 1.4022 6 6 5.3143 1.5438 0.9984 7 6 5.4576 2.4654 2.1822 8 1 5.0447 2.1830 3.1394 9 6 6.1148 3.6694 2.0429 10 7 6.6171 4.0134 0.8772 11 14 6.2930 4.8114 3.5104 12 1 7.5490 4.4930 4.2358 13 1 6.3365 6.2191 3.0397 14 1 5.1351 4.6299 4.4223 15 16 5.4120 -1.0207 1.8518 16 8 4.5144 -2.0862 1.5725 17 8 6.6558 -0.9136 1.1731 18 6 5.6456 -0.8378 3.6414 19 6 6.3973 -2.0304 4.1744 20 6 5.7052 -3.1418 4.6172 21 6 6.3950 -4.2388 5.1021 22 17 5.5258 -5.6375 5.6515 23 6 7.7771 -4.2188 5.1538 24 6 8.4692 -3.1041 4.7154 25 17 10.2037 -3.0778 4.7806 26 6 7.7785 -2.0100 4.2254 27 1 2.9710 0.7456 -0.7082 28 1 2.9718 -0.9848 -0.2908 29 1 2.7549 -0.4057 2.1104 30 1 2.7541 1.3246 1.6931 31 1 6.3028 1.2633 0.6347 32 1 4.7664 2.0531 0.2056 33 1 7.0798 4.8603 0.7794 34 1 6.2142 0.0701 3.8427 35 1 4.6734 -0.7736 4.1301 36 1 4.6259 -3.1556 4.5809 37 1 8.3159 -5.0730 5.5367 38 1 8.3186 -1.1397 3.8829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089764343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:08 Heat of formation + Delta-G solvation = -53.719670 kcal Electronic energy + Delta-G solvation = -26996.149833 eV Core-core repulsion = 22823.876501 eV Total energy + Delta-G solvation = -4172.273332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 376.020 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.73914 -38.43788 -38.07398 -37.83947 -37.50219 -37.09676 -36.84412 -34.63398 -34.08659 -32.05393 -31.82675 -28.78273 -28.62461 -25.30953 -24.01222 -23.83072 -22.99434 -19.78221 -18.92320 -18.42416 -18.35647 -18.21632 -17.48082 -17.20174 -16.96800 -16.75961 -16.31210 -15.84999 -15.52097 -15.24742 -15.11067 -14.84582 -14.63338 -14.34478 -13.85030 -13.80406 -13.63508 -13.44494 -13.42037 -13.19982 -13.12624 -13.08865 -12.87598 -12.82787 -12.78064 -12.69144 -12.60857 -12.23997 -12.13520 -12.04639 -12.01689 -11.84677 -11.59130 -11.50544 -10.49368 -10.07565 -9.90235 -9.67855 -8.10033 -6.22635 -0.82828 -0.20639 -0.03622 0.68405 1.14531 1.48675 1.51862 1.58566 1.66439 1.84974 1.88678 2.20266 2.47987 2.84618 3.06081 3.22119 3.24664 3.28116 3.80425 3.81544 3.87344 3.95973 3.97237 4.18229 4.21235 4.33548 4.53115 4.62672 4.70554 4.82968 4.90474 5.04798 5.06317 5.15802 5.31148 5.46178 5.56650 5.82810 5.93788 6.17927 6.61367 6.91427 7.48473 8.97518 Molecular weight = 376.02amu Principal moments of inertia in cm(-1) A = 0.007420 B = 0.003585 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3772.904185 B = 7808.557713 C =10413.389269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.247 3.753 3 C -0.048 4.048 4 C 0.127 3.873 5 N -0.982 5.982 6 C 0.252 3.748 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.017 3.983 10 N -0.925 5.925 11 Si 0.946 3.054 12 H -0.278 1.278 13 H -0.293 1.293 14 H -0.259 1.259 15 S 2.607 3.393 16 O -0.969 6.969 17 O -0.985 6.985 18 C -0.580 4.580 19 C -0.071 4.071 20 C -0.098 4.098 21 C -0.027 4.027 22 Cl -0.043 7.043 23 C -0.093 4.093 24 C -0.028 4.028 25 Cl -0.049 7.049 26 C -0.107 4.107 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.029 0.971 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.159 0.841 35 H 0.178 0.822 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 -14.882 9.983 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.070 4.070 3 C -0.090 4.090 4 C 0.000 4.000 5 N -0.819 5.819 6 C 0.129 3.871 7 C -0.587 4.587 8 H 0.099 0.901 9 C -0.183 4.183 10 N -0.564 5.564 11 Si 0.772 3.228 12 H -0.203 1.203 13 H -0.219 1.219 14 H -0.183 1.183 15 S 2.703 3.297 16 O -0.959 6.959 17 O -0.975 6.975 18 C -0.708 4.708 19 C -0.073 4.073 20 C -0.117 4.117 21 C -0.054 4.054 22 Cl -0.014 7.014 23 C -0.113 4.113 24 C -0.055 4.055 25 Cl -0.020 7.020 26 C -0.127 4.127 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.177 0.823 35 H 0.195 0.805 36 H 0.184 0.816 37 H 0.186 0.814 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.376 -15.521 9.334 18.116 hybrid contribution 0.873 1.386 0.940 1.888 sum 0.497 -14.135 10.275 17.482 Atomic orbital electron populations 1.81214 1.14209 1.11208 1.10179 1.29176 0.94976 0.91151 0.91691 1.19924 0.80300 1.07047 1.01746 1.21191 0.78780 1.04907 0.95159 1.57273 1.14048 1.29772 1.80764 1.18906 0.91702 0.80997 0.95494 1.21981 1.35780 1.03139 0.97770 0.90112 1.25673 0.95272 0.99555 0.97821 1.70039 1.37869 1.23487 1.25022 0.85737 0.78919 0.78053 0.80091 1.20334 1.21896 1.18316 1.04983 0.73508 0.73122 0.78113 1.93538 1.64554 1.53922 1.83930 1.93548 1.46179 1.86195 1.71588 1.29720 1.11647 1.04261 1.25193 1.18948 0.92770 0.94226 1.01356 1.21414 1.02472 0.90995 0.96849 1.20731 0.92071 0.90442 1.02165 1.98398 1.75913 1.39186 1.87880 1.21198 0.92241 0.98481 0.99375 1.20742 0.85957 0.95782 1.03035 1.98397 1.08059 1.98547 1.96952 1.21423 0.93941 0.99056 0.98300 0.85701 0.85905 0.87872 0.88519 0.95328 0.94709 0.92748 0.82293 0.80456 0.81645 0.81384 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.99 18.54 20.00 0.37 -14.62 16 2 C 0.25 6.32 15.43 89.44 1.38 7.70 16 3 C -0.05 -1.09 6.02 28.79 0.17 -0.92 16 4 C 0.13 3.13 5.21 86.38 0.45 3.58 16 5 N -0.98 -30.95 2.70 -519.85 -1.40 -32.35 16 6 C 0.25 10.53 5.41 85.63 0.46 10.99 16 7 C -0.55 -24.43 9.38 25.60 0.24 -24.19 16 8 H 0.08 3.24 7.81 -2.91 -0.02 3.21 16 9 C 0.02 0.82 5.46 84.65 0.46 1.28 16 10 N -0.92 -49.21 13.29 21.45 0.28 -48.92 16 11 Si 0.95 38.42 29.54 68.60 2.03 40.44 16 12 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 13 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 15 S 2.61 80.24 5.36 -56.49 -0.30 79.94 16 16 O -0.97 -29.63 16.72 -127.65 -2.13 -31.76 16 17 O -0.98 -38.98 16.53 -127.65 -2.11 -41.09 16 18 C -0.58 -13.57 6.31 71.24 0.45 -13.12 16 19 C -0.07 -1.65 5.14 -19.87 -0.10 -1.75 16 20 C -0.10 -1.99 9.48 22.29 0.21 -1.78 16 21 C -0.03 -0.52 6.32 22.32 0.14 -0.38 16 22 Cl -0.04 -0.72 28.96 -2.72 -0.08 -0.80 16 23 C -0.09 -1.73 9.62 22.32 0.21 -1.51 16 24 C -0.03 -0.61 6.32 22.32 0.14 -0.47 16 25 Cl -0.05 -0.99 28.96 -2.72 -0.08 -1.07 16 26 C -0.11 -2.62 9.49 22.29 0.21 -2.41 16 27 H 0.13 2.70 8.14 -2.38 -0.02 2.68 16 28 H 0.12 2.62 7.88 -2.39 -0.02 2.60 16 29 H 0.10 1.99 7.61 -2.39 -0.02 1.97 16 30 H 0.10 2.37 8.11 -2.39 -0.02 2.36 16 31 H 0.03 1.38 6.81 -2.39 -0.02 1.36 16 32 H 0.03 1.51 8.11 -2.39 -0.02 1.49 16 33 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 34 H 0.16 3.86 8.09 -2.39 -0.02 3.84 16 35 H 0.18 2.84 8.08 -2.39 -0.02 2.82 16 36 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -62.78 384.61 2.12 -60.67 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.11 Total: 12.54 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 4.44 Total: -22.97 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -0.75 Total: -95.90 kcal Atomic # 8 Polarization: -68.61 SS G_CDS: -4.24 Total: -72.85 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.44 kcal Atomic # 16 Polarization: 80.24 SS G_CDS: -0.30 Total: 79.94 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.16 Total: -1.87 kcal Total: -62.78 2.12 -60.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089764343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.947 kcal (2) G-P(sol) polarization free energy of solvation -62.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds