Wall clock time and date at job start Tue Mar 31 2020 06:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00298 * 2 1 4 4 H 1.48500 * 109.47308 * 90.63607 * 3 2 1 5 5 H 1.48498 * 109.47084 * 210.64117 * 3 2 1 6 6 H 1.48499 * 109.46844 * 330.63929 * 3 2 1 7 7 C 1.37881 * 120.00030 * 180.27098 * 2 1 3 8 8 H 1.08002 * 119.99496 * 5.50592 * 7 2 1 9 9 C 1.50703 * 120.00135 * 185.50272 * 7 2 1 10 10 N 1.46506 * 109.46916 * 178.49850 * 9 7 2 11 11 C 1.46501 * 119.99882 * 93.91659 * 10 9 7 12 12 C 1.50702 * 109.46905 * 85.45555 * 11 10 9 13 13 C 1.38231 * 119.61309 * 94.99870 * 12 11 10 14 14 C 1.38628 * 119.15859 * 179.97438 * 13 12 11 15 15 C 1.38672 * 118.41863 * 0.02562 * 14 13 12 16 16 C 1.38181 * 119.16839 * 359.97438 * 15 14 13 17 17 N 1.31845 * 119.61840 * 274.72554 * 12 11 10 18 18 C 1.34776 * 119.99843 * 273.91424 * 10 9 7 19 19 O 1.21287 * 119.99571 * 179.97438 * 18 10 9 20 20 C 1.50696 * 120.00343 * 0.02562 * 18 10 9 21 21 H 1.09005 * 115.55179 * 325.57883 * 20 18 10 22 22 C 1.53022 * 117.50346 * 111.26158 * 20 18 10 23 23 C 1.52785 * 117.50343 * 179.90106 * 20 18 10 24 24 C 1.53196 * 117.77276 * 0.11147 * 23 20 18 25 25 C 1.53460 * 107.61007 * 190.60110 * 24 23 20 26 26 C 1.52584 * 109.05478 * 294.08666 * 25 24 23 27 27 C 1.50458 * 111.37559 * 54.14387 * 26 25 24 28 28 C 1.38805 * 118.43841 * 158.63445 * 27 26 25 29 29 C 1.37983 * 120.40701 * 179.68913 * 28 27 26 30 30 C 1.38258 * 119.99586 * 0.02562 * 29 28 27 31 31 C 1.38105 * 119.74181 * 0.12402 * 30 29 28 32 32 C 1.37921 * 122.11951 * 338.57671 * 27 26 25 33 33 H 0.97007 * 120.00190 * 0.02562 * 1 2 3 34 34 H 1.08996 * 109.47434 * 298.49918 * 9 7 2 35 35 H 1.09000 * 109.46674 * 58.49938 * 9 7 2 36 36 H 1.08997 * 109.47095 * 205.46009 * 11 10 9 37 37 H 1.09005 * 109.46812 * 325.46078 * 11 10 9 38 38 H 1.07997 * 120.42178 * 0.02562 * 13 12 11 39 39 H 1.07999 * 120.79032 * 179.97438 * 14 13 12 40 40 H 1.08003 * 120.41962 * 179.97438 * 15 14 13 41 41 H 1.07999 * 119.61814 * 180.02562 * 16 15 14 42 42 H 1.09005 * 117.50118 * 214.95010 * 22 20 18 43 43 H 1.08997 * 117.50746 * 359.97438 * 22 20 18 44 44 H 1.08997 * 109.83281 * 310.13090 * 24 23 20 45 45 H 1.09003 * 109.82892 * 71.07023 * 24 23 20 46 46 H 1.08991 * 109.54122 * 53.96309 * 25 24 23 47 47 H 1.09003 * 109.53823 * 174.13358 * 25 24 23 48 48 H 1.09002 * 109.09219 * 174.62724 * 26 25 24 49 49 H 1.08990 * 109.10179 * 293.64831 * 26 25 24 50 50 H 1.08001 * 119.79569 * 359.71065 * 28 27 26 51 51 H 1.08002 * 120.00244 * 179.97438 * 29 28 27 52 52 H 1.08000 * 120.12868 * 180.09298 * 30 29 28 53 53 H 1.07991 * 119.87616 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5102 2.0387 1.4000 5 1 3.5398 1.4440 -0.7136 6 1 1.4399 2.6565 -0.6865 7 6 2.0045 -1.1941 -0.0056 8 1 1.4681 -2.1268 -0.0998 9 6 3.5063 -1.1977 0.1195 10 7 3.9926 -2.5797 0.1233 11 6 4.4224 -3.2084 -1.1282 12 6 5.8653 -2.8642 -1.3936 13 6 6.8602 -3.7374 -0.9954 14 6 8.1844 -3.4116 -1.2448 15 6 8.4596 -2.2142 -1.8877 16 6 7.4124 -1.3915 -2.2564 17 7 6.1639 -1.7364 -2.0077 18 6 4.0447 -3.2725 1.2782 19 8 4.4469 -4.4167 1.2812 20 6 3.6022 -2.6259 2.5655 21 1 3.8082 -1.5589 2.6508 22 6 2.3217 -3.1526 3.2171 23 6 3.6831 -3.4641 3.8403 24 6 4.2095 -4.8978 3.7198 25 6 3.9443 -5.6036 5.0563 26 6 4.7896 -4.9461 6.1432 27 6 4.5561 -3.4608 6.1962 28 6 4.8702 -2.7836 7.3664 29 6 4.6783 -1.4202 7.4574 30 6 4.1697 -0.7203 6.3789 31 6 3.8532 -1.3915 5.2142 32 6 4.0444 -2.7602 5.1240 33 1 -0.4851 0.8401 -0.0004 34 1 3.9424 -0.6614 -0.7232 35 1 3.7945 -0.7085 1.0499 36 1 4.3158 -4.2901 -1.0466 37 1 3.8049 -2.8433 -1.9489 38 1 6.6091 -4.6620 -0.4971 39 1 8.9827 -4.0742 -0.9447 40 1 9.4797 -1.9281 -2.0978 41 1 7.6184 -0.4575 -2.7579 42 1 1.6857 -2.4322 3.7316 43 1 1.7991 -3.9664 2.7145 44 1 3.6865 -5.4175 2.9170 45 1 5.2801 -4.8826 3.5155 46 1 2.8885 -5.5152 5.3121 47 1 4.2119 -6.6569 4.9718 48 1 4.5317 -5.3824 7.1083 49 1 5.8434 -5.1344 5.9382 50 1 5.2676 -3.3271 8.2109 51 1 4.9246 -0.8999 8.3712 52 1 4.0200 0.3471 6.4472 53 1 3.4562 -0.8470 4.3704 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089858193.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:18 Heat of formation + Delta-G solvation = 37.663621 kcal Electronic energy + Delta-G solvation = -35014.578146 eV Core-core repulsion = 30815.879602 eV Total energy + Delta-G solvation = -4198.698543 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.189 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.94706 -41.17383 -40.21591 -37.93748 -36.74994 -35.80231 -34.67407 -33.41445 -32.91227 -31.52035 -31.17737 -29.97431 -28.56084 -27.64711 -25.05605 -24.51389 -24.19011 -23.95765 -23.61159 -22.89475 -22.03312 -19.94725 -19.47613 -19.09956 -18.39656 -17.79214 -17.38444 -17.12433 -16.93866 -16.58680 -16.27948 -16.23388 -16.11316 -15.63867 -15.36100 -15.01570 -14.70041 -14.58677 -14.37213 -14.32436 -14.16240 -14.04764 -13.98435 -13.83006 -13.65738 -13.50157 -13.17684 -13.01922 -12.93121 -12.80533 -12.61192 -12.50867 -12.24700 -12.09301 -12.05543 -11.96591 -11.71858 -11.39220 -11.08721 -10.90558 -10.83581 -10.78890 -10.57204 -10.39478 -9.96851 -9.63297 -9.48408 -9.33661 -8.30646 -6.34441 0.10874 0.37238 0.40176 0.47436 1.31839 1.36300 1.46379 1.56531 2.13407 2.31479 2.66504 2.95265 3.03008 3.15976 3.33820 3.47339 3.62705 3.74829 3.77268 3.88952 3.93790 4.00621 4.03229 4.15815 4.18040 4.24285 4.26756 4.32165 4.35936 4.47189 4.48391 4.56436 4.60907 4.69240 4.71447 4.74744 4.77080 4.83533 4.85616 4.91730 4.97660 4.99437 5.08073 5.10871 5.16694 5.22157 5.22813 5.25865 5.41237 5.44222 5.50601 5.59941 5.62589 5.68628 5.79559 5.80093 6.14050 6.18227 6.54627 6.68873 7.08783 7.22286 7.32149 8.85394 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.006642 B = 0.003857 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4214.444227 B = 7258.551264 C = 9436.509927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.028 3.972 3 Si 0.926 3.074 4 H -0.262 1.262 5 H -0.251 1.251 6 H -0.281 1.281 7 C -0.527 4.527 8 H 0.036 0.964 9 C 0.227 3.773 10 N -0.584 5.584 11 C 0.167 3.833 12 C 0.096 3.904 13 C -0.160 4.160 14 C -0.077 4.077 15 C -0.163 4.163 16 C 0.080 3.920 17 N -0.507 5.507 18 C 0.548 3.452 19 O -0.565 6.565 20 C -0.174 4.174 21 H 0.112 0.888 22 C -0.123 4.123 23 C -0.045 4.045 24 C -0.062 4.062 25 C -0.116 4.116 26 C -0.076 4.076 27 C -0.079 4.079 28 C -0.122 4.122 29 C -0.121 4.121 30 C -0.131 4.131 31 C -0.138 4.138 32 C -0.056 4.056 33 H 0.267 0.733 34 H 0.040 0.960 35 H 0.029 0.971 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.166 0.834 40 H 0.172 0.828 41 H 0.176 0.824 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.150 0.850 51 H 0.149 0.851 52 H 0.134 0.866 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.450 -6.320 10.401 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.171 4.171 3 Si 0.750 3.250 4 H -0.187 1.187 5 H -0.175 1.175 6 H -0.206 1.206 7 C -0.565 4.565 8 H 0.054 0.946 9 C 0.105 3.895 10 N -0.313 5.313 11 C 0.043 3.957 12 C -0.042 4.042 13 C -0.181 4.181 14 C -0.103 4.103 15 C -0.183 4.183 16 C -0.077 4.077 17 N -0.217 5.217 18 C 0.338 3.662 19 O -0.447 6.447 20 C -0.195 4.195 21 H 0.130 0.870 22 C -0.161 4.161 23 C -0.046 4.046 24 C -0.099 4.099 25 C -0.154 4.154 26 C -0.113 4.113 27 C -0.079 4.079 28 C -0.140 4.140 29 C -0.139 4.139 30 C -0.149 4.149 31 C -0.156 4.156 32 C -0.056 4.056 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.153 0.847 39 H 0.183 0.817 40 H 0.189 0.811 41 H 0.193 0.807 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.104 0.896 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.168 0.832 51 H 0.167 0.833 52 H 0.152 0.848 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.805 -6.240 10.116 20.583 hybrid contribution -0.083 0.863 -0.555 1.029 sum 16.722 -5.377 9.561 19.999 Atomic orbital electron populations 1.70030 1.07922 1.28086 1.51491 1.25566 0.95302 1.02259 0.93982 0.86013 0.79809 0.79674 0.79552 1.18689 1.17501 1.20632 1.21378 0.91007 0.93443 1.50692 0.94591 1.19494 0.93354 0.79223 0.97456 1.47787 1.61923 1.15208 1.06412 1.20166 0.89914 0.98830 0.86761 1.21539 0.96603 0.90972 0.95084 1.22146 0.94102 1.01207 1.00595 1.21984 0.96268 0.97030 0.95026 1.22526 1.02000 0.94829 0.98945 1.23285 0.87286 1.00377 0.96744 1.67476 1.24095 1.17225 1.12913 1.19728 0.76587 0.85286 0.84603 1.90544 1.49450 1.17881 1.86779 1.22210 1.05866 0.99724 0.91670 0.86977 1.22938 0.89561 1.02446 1.01143 1.20327 0.99040 0.96195 0.89032 1.21178 1.00503 0.90659 0.97602 1.21577 1.00157 0.99878 0.93753 1.20420 1.00843 0.89626 1.00378 1.19915 0.98136 0.96909 0.92973 1.21440 1.00262 0.94764 0.97526 1.21399 0.98842 0.94605 0.99041 1.21318 0.99717 1.00710 0.93142 1.21209 1.01255 0.94287 0.98830 1.18882 1.00221 0.93044 0.93472 0.92344 0.94218 0.95282 0.88447 0.90271 0.84683 0.81682 0.81071 0.80741 0.88244 0.89073 0.91504 0.92243 0.92226 0.89650 0.88575 0.89951 0.83217 0.83346 0.84792 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.48 13.96 21.45 0.30 -56.18 16 2 C 0.03 1.58 5.47 84.66 0.46 2.05 16 3 Si 0.93 42.59 27.50 68.60 1.89 44.48 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.25 -11.09 6.55 99.48 0.65 -10.43 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.53 -29.19 9.87 25.60 0.25 -28.93 16 8 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 9 C 0.23 10.73 4.04 85.63 0.35 11.08 16 10 N -0.58 -25.20 2.45 -830.48 -2.03 -27.23 16 11 C 0.17 6.48 5.75 85.63 0.49 6.97 16 12 C 0.10 3.33 6.36 42.56 0.27 3.60 16 13 C -0.16 -4.62 9.72 22.36 0.22 -4.41 16 14 C -0.08 -1.67 10.18 22.47 0.23 -1.44 16 15 C -0.16 -3.26 10.11 22.36 0.23 -3.03 16 16 C 0.08 2.08 11.18 84.67 0.95 3.02 16 17 N -0.51 -17.60 10.27 -183.88 -1.89 -19.48 16 18 C 0.55 22.91 7.41 87.66 0.65 23.56 16 19 O -0.57 -23.36 12.68 -3.05 -0.04 -23.39 16 20 C -0.17 -6.80 4.53 -11.61 -0.05 -6.85 16 21 H 0.11 4.53 4.92 -2.38 -0.01 4.52 16 22 C -0.12 -4.61 9.34 30.58 0.29 -4.32 16 23 C -0.05 -1.51 2.24 -52.92 -0.12 -1.63 16 24 C -0.06 -1.89 4.01 30.81 0.12 -1.77 16 25 C -0.12 -2.66 5.92 30.61 0.18 -2.48 16 26 C -0.08 -1.50 5.66 29.63 0.17 -1.33 16 27 C -0.08 -1.95 5.75 -19.88 -0.11 -2.06 16 28 C -0.12 -2.47 9.63 22.34 0.22 -2.25 16 29 C -0.12 -2.46 10.04 22.21 0.22 -2.24 16 30 C -0.13 -3.24 10.06 22.24 0.22 -3.02 16 31 C -0.14 -4.18 8.90 22.30 0.20 -3.98 16 32 C -0.06 -1.69 5.60 -19.85 -0.11 -1.81 16 33 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 34 H 0.04 1.93 7.01 -2.39 -0.02 1.91 16 35 H 0.03 1.36 5.70 -2.39 -0.01 1.34 16 36 H 0.10 3.60 7.19 -2.39 -0.02 3.58 16 37 H 0.08 3.25 8.11 -2.38 -0.02 3.23 16 38 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 39 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.18 3.47 8.06 -2.91 -0.02 3.44 16 42 H 0.10 3.70 8.02 -2.38 -0.02 3.68 16 43 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 44 H 0.07 2.30 6.47 -2.39 -0.02 2.28 16 45 H 0.06 1.90 7.90 -2.39 -0.02 1.88 16 46 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 47 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.10 1.42 8.10 -2.39 -0.02 1.40 16 49 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 51 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 52 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 53 H 0.11 3.52 6.32 -2.92 -0.02 3.50 16 Total: -1.00 -70.34 424.44 4.40 -65.95 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: 0.86 Total: 37.14 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 5.32 Total: -21.28 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -3.62 Total: -102.89 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.04 Total: -23.39 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.89 Total: 44.48 kcal Total: -70.34 4.40 -65.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089858193.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.609 kcal (2) G-P(sol) polarization free energy of solvation -70.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds