Wall clock time and date at job start Tue Mar 31 2020 06:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00176 * 2 1 4 4 H 1.48504 * 109.46872 * 269.99906 * 3 2 1 5 5 H 1.48500 * 109.47015 * 29.99516 * 3 2 1 6 6 H 1.48491 * 109.47480 * 149.99841 * 3 2 1 7 7 C 1.37880 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99943 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00374 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47275 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00039 * 276.15647 * 10 9 7 12 12 C 1.50701 * 109.46747 * 269.99871 * 11 10 9 13 13 C 1.38234 * 119.61813 * 95.00212 * 12 11 10 14 14 C 1.38627 * 119.15777 * 179.97438 * 13 12 11 15 15 C 1.38666 * 118.42183 * 359.97438 * 14 13 12 16 16 C 1.38182 * 119.16768 * 0.02562 * 15 14 13 17 17 N 1.31858 * 119.61928 * 274.72219 * 12 11 10 18 18 C 1.34782 * 119.99877 * 96.15271 * 10 9 7 19 19 O 1.21274 * 119.99817 * 184.75451 * 18 10 9 20 20 C 1.50704 * 119.99847 * 4.75916 * 18 10 9 21 21 H 1.08993 * 115.56883 * 92.49105 * 20 18 10 22 22 C 1.53036 * 117.50133 * 306.78157 * 20 18 10 23 23 C 1.52802 * 117.49970 * 238.19744 * 20 18 10 24 24 C 1.53191 * 117.75844 * 215.08021 * 23 20 18 25 25 C 1.53448 * 107.64830 * 190.66882 * 24 23 20 26 26 C 1.52574 * 109.08683 * 294.22795 * 25 24 23 27 27 C 1.50467 * 111.37036 * 54.20355 * 26 25 24 28 28 C 1.38804 * 118.43799 * 158.42199 * 27 26 25 29 29 C 1.37995 * 120.40674 * 179.29368 * 28 27 26 30 30 C 1.38263 * 119.97713 * 359.70973 * 29 28 27 31 31 C 1.38101 * 119.75311 * 0.76071 * 30 29 28 32 32 C 1.37911 * 122.11000 * 338.04938 * 27 26 25 33 33 H 0.96997 * 119.99965 * 0.02562 * 1 2 3 34 34 H 1.08995 * 109.46990 * 59.99292 * 9 7 2 35 35 H 1.09003 * 109.46673 * 299.99418 * 9 7 2 36 36 H 1.08998 * 109.47355 * 29.99891 * 11 10 9 37 37 H 1.08996 * 109.46954 * 149.99753 * 11 10 9 38 38 H 1.07998 * 120.41412 * 359.95621 * 13 12 11 39 39 H 1.08003 * 120.78506 * 179.97438 * 14 13 12 40 40 H 1.08002 * 120.41541 * 180.02562 * 15 14 13 41 41 H 1.07998 * 119.61774 * 180.02562 * 16 15 14 42 42 H 1.08992 * 117.50839 * 145.05135 * 22 20 18 43 43 H 1.09005 * 117.53454 * 359.97438 * 22 20 18 44 44 H 1.08998 * 109.82565 * 71.13842 * 24 23 20 45 45 H 1.08997 * 109.87976 * 310.23608 * 24 23 20 46 46 H 1.09000 * 109.53424 * 174.34757 * 25 24 23 47 47 H 1.08993 * 109.53188 * 54.11057 * 25 24 23 48 48 H 1.08995 * 109.10281 * 293.71749 * 26 25 24 49 49 H 1.09004 * 109.04981 * 174.65476 * 26 25 24 50 50 H 1.08005 * 119.79807 * 359.27070 * 28 27 26 51 51 H 1.07996 * 120.01041 * 179.97438 * 29 28 27 52 52 H 1.08003 * 120.12286 * 180.48968 * 30 29 28 53 53 H 1.08000 * 119.88096 * 179.68008 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0022 11 6 4.1153 -3.3104 1.2641 12 6 5.4867 -3.0915 1.8493 13 6 5.6771 -2.0969 2.7903 14 6 6.9425 -1.9041 3.3227 15 6 7.9734 -2.7229 2.8873 16 6 7.7075 -3.6965 1.9435 17 7 6.4899 -3.8544 1.4620 18 6 4.3429 -3.1697 -1.1578 19 8 4.6647 -4.3389 -1.1680 20 6 4.3267 -2.3813 -2.4420 21 1 5.2714 -1.9134 -2.7187 22 6 3.0381 -1.6362 -2.7976 23 6 3.4347 -2.8925 -3.5725 24 6 3.9322 -2.7137 -5.0103 25 6 2.7672 -3.0498 -5.9508 26 6 2.4263 -4.5306 -5.8134 27 6 2.1597 -4.9010 -4.3796 28 6 1.4138 -6.0424 -4.1196 29 6 1.1573 -6.4280 -2.8196 30 6 1.6495 -5.6788 -1.7669 31 6 2.3836 -4.5373 -2.0224 32 6 2.6379 -4.1491 -3.3271 33 1 -0.4850 0.8400 -0.0004 34 1 3.8745 -0.6800 0.8910 35 1 3.8752 -0.6805 -0.8889 36 1 3.3602 -2.9520 1.9638 37 1 3.9643 -4.3740 1.0801 38 1 4.8506 -1.4777 3.1063 39 1 7.1210 -1.1345 4.0591 40 1 8.9718 -2.6011 3.2810 41 1 8.5049 -4.3384 1.5996 42 1 3.1351 -0.6782 -3.3082 43 1 2.2017 -1.7162 -2.1031 44 1 4.7665 -3.3890 -5.1995 45 1 4.2484 -1.6825 -5.1675 46 1 3.0564 -2.8363 -6.9799 47 1 1.8979 -2.4493 -5.6832 48 1 3.2606 -5.1248 -6.1860 49 1 1.5396 -4.7483 -6.4088 50 1 1.0316 -6.6322 -4.9396 51 1 0.5759 -7.3170 -2.6246 52 1 1.4568 -5.9828 -0.7486 53 1 2.7647 -3.9478 -1.2016 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089858197.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:27 Heat of formation + Delta-G solvation = 58.229440 kcal Electronic energy + Delta-G solvation = -35951.773630 eV Core-core repulsion = 31753.966887 eV Total energy + Delta-G solvation = -4197.806742 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.189 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.31438 -41.10751 -39.97345 -38.01067 -36.89701 -35.66009 -34.61616 -33.41336 -32.79535 -31.48492 -31.17230 -29.99647 -28.58822 -27.53700 -24.94700 -24.52149 -24.04887 -23.90535 -23.65987 -22.87401 -22.07355 -20.21755 -19.53301 -19.07785 -17.90821 -17.72583 -17.38539 -17.12673 -16.85718 -16.74262 -16.36064 -16.31322 -16.07600 -15.88150 -15.25403 -14.77071 -14.64777 -14.58585 -14.44478 -14.29607 -14.10382 -13.99870 -13.79648 -13.72399 -13.61039 -13.33152 -13.16313 -12.98201 -12.82099 -12.66296 -12.53840 -12.42763 -12.18566 -12.10722 -11.97161 -11.75647 -11.55527 -11.23267 -11.20041 -10.88559 -10.82024 -10.71402 -10.55157 -10.36800 -9.96683 -9.64119 -9.35644 -9.21446 -8.24411 -6.28327 0.11433 0.39230 0.47220 0.58360 1.40006 1.42407 1.50442 1.72811 2.15866 2.36691 2.66948 2.97282 3.08230 3.14598 3.36636 3.51501 3.69848 3.75702 3.81137 3.86072 3.99126 4.02647 4.14573 4.15892 4.22268 4.24572 4.28573 4.32956 4.39165 4.49344 4.51652 4.58161 4.65037 4.71237 4.74029 4.76712 4.85174 4.88574 4.89640 4.94210 4.97154 5.06918 5.10672 5.18347 5.21921 5.22435 5.26052 5.35169 5.43659 5.46472 5.51316 5.64311 5.67133 5.74816 5.80093 5.85494 6.20874 6.22454 6.60958 6.74146 7.12751 7.27605 7.38935 8.91136 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.007456 B = 0.004199 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3754.664584 B = 6667.007264 C = 8559.906666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.031 3.969 3 Si 0.926 3.074 4 H -0.260 1.260 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.521 4.521 8 H 0.032 0.968 9 C 0.217 3.783 10 N -0.590 5.590 11 C 0.168 3.832 12 C 0.097 3.903 13 C -0.167 4.167 14 C -0.075 4.075 15 C -0.164 4.164 16 C 0.078 3.922 17 N -0.501 5.501 18 C 0.551 3.449 19 O -0.565 6.565 20 C -0.182 4.182 21 H 0.144 0.856 22 C -0.151 4.151 23 C -0.060 4.060 24 C -0.077 4.077 25 C -0.112 4.112 26 C -0.075 4.075 27 C -0.084 4.084 28 C -0.136 4.136 29 C -0.125 4.125 30 C -0.153 4.153 31 C -0.124 4.124 32 C -0.063 4.063 33 H 0.267 0.733 34 H 0.037 0.963 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.141 0.859 39 H 0.168 0.832 40 H 0.171 0.829 41 H 0.171 0.829 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.055 0.945 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.151 0.849 51 H 0.142 0.858 52 H 0.108 0.892 53 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.251 -2.748 -4.661 13.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.168 4.168 3 Si 0.749 3.251 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.559 4.559 8 H 0.050 0.950 9 C 0.096 3.904 10 N -0.321 5.321 11 C 0.044 3.956 12 C -0.041 4.041 13 C -0.187 4.187 14 C -0.101 4.101 15 C -0.183 4.183 16 C -0.079 4.079 17 N -0.211 5.211 18 C 0.342 3.658 19 O -0.445 6.445 20 C -0.203 4.203 21 H 0.162 0.838 22 C -0.188 4.188 23 C -0.060 4.060 24 C -0.114 4.114 25 C -0.149 4.149 26 C -0.112 4.112 27 C -0.084 4.084 28 C -0.154 4.154 29 C -0.143 4.143 30 C -0.171 4.171 31 C -0.142 4.142 32 C -0.063 4.063 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.159 0.841 39 H 0.185 0.815 40 H 0.189 0.811 41 H 0.188 0.812 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.118 0.882 47 H 0.074 0.926 48 H 0.105 0.895 49 H 0.110 0.890 50 H 0.169 0.831 51 H 0.160 0.840 52 H 0.126 0.874 53 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.090 -3.890 -5.278 13.753 hybrid contribution -0.230 1.251 1.500 1.966 sum 11.859 -2.640 -3.778 12.723 Atomic orbital electron populations 1.70042 1.08201 1.28090 1.51258 1.25562 0.95147 1.02261 0.93873 0.86033 0.79871 0.79364 0.79803 1.18472 1.21427 1.16585 1.21234 0.90522 0.93051 1.51103 0.94953 1.19737 0.93375 0.78857 0.98443 1.47943 1.63439 1.15614 1.05098 1.20072 0.92091 0.97448 0.86003 1.21538 0.95083 0.93061 0.94455 1.22227 0.99985 0.98514 0.98004 1.21988 0.91501 0.98485 0.98142 1.22521 1.01798 0.95943 0.98058 1.23256 0.93452 0.97157 0.94040 1.67526 1.01073 1.26867 1.25666 1.19584 0.74880 0.86504 0.84799 1.90703 1.50174 1.17015 1.86654 1.22353 0.98417 1.05275 0.94242 0.83823 1.23752 0.97624 0.95322 1.02093 1.20456 0.98824 0.92916 0.93851 1.21308 0.98277 1.02784 0.89020 1.21485 0.97819 0.95384 1.00240 1.20432 1.03017 0.97260 0.90444 1.20015 0.97416 0.94891 0.96077 1.21380 0.99844 0.97045 0.97130 1.21289 1.00084 1.00129 0.92759 1.21157 0.99878 0.96588 0.99504 1.21905 0.96816 0.97676 0.97839 1.18943 0.98898 0.95807 0.92626 0.92419 0.94463 0.93230 0.88540 0.91324 0.84074 0.81465 0.81126 0.81184 0.86763 0.87370 0.90766 0.89410 0.88214 0.92642 0.89487 0.89043 0.83145 0.84017 0.87363 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.09 13.96 21.45 0.30 -53.79 16 2 C 0.03 1.62 5.47 84.66 0.46 2.09 16 3 Si 0.93 38.79 27.47 68.60 1.88 40.67 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 7 C -0.52 -26.69 7.26 25.60 0.19 -26.50 16 8 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 9 C 0.22 9.35 3.74 85.63 0.32 9.67 16 10 N -0.59 -24.91 2.07 -840.90 -1.74 -26.65 16 11 C 0.17 6.67 5.77 85.63 0.49 7.17 16 12 C 0.10 3.39 6.36 42.55 0.27 3.66 16 13 C -0.17 -4.74 9.72 22.36 0.22 -4.52 16 14 C -0.08 -1.61 10.18 22.47 0.23 -1.38 16 15 C -0.16 -3.27 10.11 22.36 0.23 -3.05 16 16 C 0.08 2.07 11.18 84.67 0.95 3.02 16 17 N -0.50 -17.89 10.27 -183.88 -1.89 -19.78 16 18 C 0.55 23.80 4.16 87.66 0.36 24.16 16 19 O -0.57 -27.25 14.15 -3.01 -0.04 -27.30 16 20 C -0.18 -6.82 4.88 -11.59 -0.06 -6.87 16 21 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 22 C -0.15 -5.76 7.23 30.55 0.22 -5.54 16 23 C -0.06 -2.10 2.24 -52.95 -0.12 -2.22 16 24 C -0.08 -1.96 5.73 30.81 0.18 -1.78 16 25 C -0.11 -2.48 5.92 30.60 0.18 -2.30 16 26 C -0.07 -1.73 5.66 29.63 0.17 -1.57 16 27 C -0.08 -2.73 5.75 -19.88 -0.11 -2.85 16 28 C -0.14 -4.12 9.63 22.35 0.22 -3.91 16 29 C -0.12 -4.15 10.04 22.22 0.22 -3.93 16 30 C -0.15 -6.23 10.06 22.24 0.22 -6.01 16 31 C -0.12 -5.54 6.89 22.29 0.15 -5.38 16 32 C -0.06 -2.46 5.46 -19.85 -0.11 -2.56 16 33 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.04 1.54 7.17 -2.39 -0.02 1.53 16 35 H 0.05 2.05 5.01 -2.39 -0.01 2.04 16 36 H 0.10 3.70 7.97 -2.39 -0.02 3.68 16 37 H 0.07 2.99 7.36 -2.39 -0.02 2.97 16 38 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 40 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.17 3.55 8.06 -2.91 -0.02 3.52 16 42 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 43 H 0.11 5.13 5.03 -2.38 -0.01 5.12 16 44 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.09 1.90 8.04 -2.39 -0.02 1.88 16 46 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 48 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.09 1.74 8.10 -2.38 -0.02 1.72 16 50 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 51 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 52 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 53 H 0.12 5.81 3.57 -8.27 -0.03 5.78 16 Total: -1.00 -73.43 415.96 4.24 -69.19 By element: Atomic # 1 Polarization: 47.40 SS G_CDS: 0.84 Total: 48.25 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 4.88 Total: -30.60 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -3.33 Total: -100.21 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.04 Total: -27.30 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.88 Total: 40.67 kcal Total: -73.43 4.24 -69.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089858197.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.419 kcal (2) G-P(sol) polarization free energy of solvation -73.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds