Wall clock time and date at job start Tue Mar 31 2020 06:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00334 * 2 1 4 4 H 1.48500 * 109.47119 * 270.00294 * 3 2 1 5 5 H 1.48505 * 109.47080 * 30.00228 * 3 2 1 6 6 H 1.48494 * 109.47297 * 150.00206 * 3 2 1 7 7 C 1.37878 * 119.99580 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99945 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99863 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46969 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00296 * 269.99524 * 10 9 7 12 12 C 1.50699 * 109.47570 * 270.00503 * 11 10 9 13 13 C 1.38227 * 119.61534 * 94.99896 * 12 11 10 14 14 C 1.38631 * 119.15640 * 179.97438 * 13 12 11 15 15 C 1.38674 * 118.42189 * 0.02562 * 14 13 12 16 16 C 1.38186 * 119.16300 * 359.97438 * 15 14 13 17 17 N 1.31856 * 119.61300 * 274.72342 * 12 11 10 18 18 C 1.34780 * 119.99974 * 90.00555 * 10 9 7 19 19 O 1.21277 * 120.00114 * 180.02562 * 18 10 9 20 20 C 1.50701 * 119.99449 * 359.97438 * 18 10 9 21 21 H 1.09002 * 115.55237 * 34.32755 * 20 18 10 22 22 C 1.53040 * 117.52641 * 248.59814 * 20 18 10 23 23 C 1.52785 * 117.49886 * 180.02562 * 20 18 10 24 24 C 1.53205 * 117.76945 * 359.92490 * 23 20 18 25 25 C 1.53455 * 107.60635 * 169.35020 * 24 23 20 26 26 C 1.52574 * 109.07081 * 65.91053 * 25 24 23 27 27 C 1.50462 * 111.32687 * 305.93308 * 26 25 24 28 28 C 1.38938 * 118.33326 * 201.33181 * 27 26 25 29 29 C 1.37991 * 120.37335 * 180.28266 * 28 27 26 30 30 C 1.38257 * 119.99066 * 0.03684 * 29 28 27 31 31 C 1.38099 * 119.74954 * 359.82866 * 30 29 28 32 32 C 1.37793 * 122.22148 * 21.34958 * 27 26 25 33 33 H 0.97005 * 119.99820 * 359.97438 * 1 2 3 34 34 H 1.09005 * 109.47015 * 59.99478 * 9 7 2 35 35 H 1.08994 * 109.47492 * 299.99796 * 9 7 2 36 36 H 1.09004 * 109.46674 * 30.00591 * 11 10 9 37 37 H 1.09002 * 109.47005 * 149.99919 * 11 10 9 38 38 H 1.07994 * 120.42511 * 0.02562 * 13 12 11 39 39 H 1.08002 * 120.78857 * 179.97438 * 14 13 12 40 40 H 1.07997 * 120.42097 * 179.97438 * 15 14 13 41 41 H 1.08001 * 119.61476 * 179.97438 * 16 15 14 42 42 H 1.08996 * 117.50831 * 145.06421 * 22 20 18 43 43 H 1.09001 * 117.50550 * 0.02562 * 22 20 18 44 44 H 1.09005 * 109.82950 * 49.82732 * 24 23 20 45 45 H 1.08999 * 109.88144 * 288.90964 * 24 23 20 46 46 H 1.08995 * 109.53942 * 306.02779 * 25 24 23 47 47 H 1.09004 * 109.53654 * 185.78576 * 25 24 23 48 48 H 1.09002 * 109.09946 * 66.39333 * 26 25 24 49 49 H 1.09003 * 109.09633 * 185.48083 * 26 25 24 50 50 H 1.07995 * 119.82948 * 0.30195 * 28 27 26 51 51 H 1.07997 * 120.00385 * 180.02562 * 29 28 27 52 52 H 1.08007 * 120.12625 * 179.85317 * 30 29 28 53 53 H 1.07997 * 119.88155 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 6 4.2444 -3.2658 1.2677 12 6 5.6679 -3.0290 1.7022 13 6 5.9513 -2.0022 2.5832 14 6 7.2640 -1.7932 2.9769 15 6 8.2469 -2.6281 2.4671 16 6 7.8878 -3.6339 1.5903 17 7 6.6276 -3.8071 1.2418 18 6 4.2239 -3.2110 -1.1682 19 8 4.6277 -4.3546 -1.1681 20 6 3.9718 -2.5009 -2.4733 21 1 4.1815 -1.4313 -2.4747 22 6 2.8053 -2.9936 -3.3327 23 6 4.2444 -3.2752 -3.7618 24 6 4.7551 -4.7142 -3.6355 25 6 4.6926 -5.3529 -5.0294 26 6 5.6846 -4.6447 -5.9472 27 6 5.4537 -3.1580 -5.9592 28 6 5.9338 -2.4248 -7.0373 29 6 5.7507 -1.0581 -7.0886 30 6 5.0869 -0.4108 -6.0630 31 6 4.6063 -1.1376 -4.9915 32 6 4.7873 -2.5097 -4.9422 33 1 -0.4850 0.8401 0.0004 34 1 3.8752 -0.6805 0.8888 35 1 3.8745 -0.6802 -0.8911 36 1 3.5639 -2.8815 2.0276 37 1 4.0773 -4.3351 1.1377 38 1 5.1602 -1.3714 2.9606 39 1 7.5153 -0.9985 3.6637 40 1 9.2800 -2.4940 2.7518 41 1 8.6474 -4.2881 1.1885 42 1 2.2477 -2.2481 -3.8996 43 1 2.2196 -3.8312 -2.9540 44 1 4.1225 -5.2717 -2.9446 45 1 5.7838 -4.7122 -3.2753 46 1 3.6853 -5.2501 -5.4327 47 1 4.9519 -6.4093 -4.9582 48 1 6.6980 -4.8456 -5.5997 49 1 5.5719 -5.0313 -6.9601 50 1 6.4530 -2.9272 -7.8400 51 1 6.1259 -0.4941 -7.9297 52 1 4.9444 0.6592 -6.0997 53 1 4.0872 -0.6342 -4.1894 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089858199.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:31 Heat of formation + Delta-G solvation = 38.476798 kcal Electronic energy + Delta-G solvation = -35011.778131 eV Core-core repulsion = 30813.114850 eV Total energy + Delta-G solvation = -4198.663281 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.189 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.92550 -41.15182 -40.17205 -37.93019 -36.72630 -35.81338 -34.65312 -33.41482 -32.84117 -31.51798 -31.18614 -29.98469 -28.55954 -27.64167 -25.01777 -24.56648 -24.10864 -23.95900 -23.61812 -22.87641 -22.03517 -19.93998 -19.46270 -19.09980 -18.36766 -17.67608 -17.47556 -17.04181 -16.94796 -16.59182 -16.28100 -16.23215 -16.10992 -15.59668 -15.32937 -14.99282 -14.66796 -14.58692 -14.37653 -14.33584 -14.14315 -14.04481 -13.91052 -13.87919 -13.62385 -13.48500 -13.18749 -13.00995 -12.93475 -12.73066 -12.61998 -12.49758 -12.24363 -12.09487 -12.05559 -11.97000 -11.70425 -11.39418 -11.09621 -10.91216 -10.81184 -10.78446 -10.46640 -10.34730 -9.95145 -9.62930 -9.44255 -9.34032 -8.28448 -6.34388 0.12332 0.39503 0.41120 0.47114 1.36499 1.38178 1.46969 1.65169 2.17146 2.32984 2.67030 2.97734 3.04904 3.15749 3.38586 3.45397 3.61658 3.76357 3.79090 3.85954 3.94182 4.01310 4.03979 4.15545 4.18915 4.25510 4.26942 4.31008 4.34562 4.46429 4.49239 4.58984 4.61094 4.67816 4.70369 4.74402 4.78073 4.78795 4.85895 4.90032 4.96518 4.98212 5.06268 5.09566 5.16423 5.21128 5.23196 5.26575 5.39707 5.44080 5.49572 5.62287 5.66068 5.68160 5.79930 5.80941 6.13834 6.20635 6.59514 6.71249 7.14126 7.26566 7.38949 8.87745 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.006538 B = 0.003907 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4281.555530 B = 7165.351922 C = 9441.945464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.241 1.241 7 C -0.529 4.529 8 H 0.033 0.967 9 C 0.223 3.777 10 N -0.588 5.588 11 C 0.169 3.831 12 C 0.095 3.905 13 C -0.169 4.169 14 C -0.076 4.076 15 C -0.165 4.165 16 C 0.078 3.922 17 N -0.497 5.497 18 C 0.543 3.457 19 O -0.556 6.556 20 C -0.175 4.175 21 H 0.117 0.883 22 C -0.124 4.124 23 C -0.047 4.047 24 C -0.061 4.061 25 C -0.116 4.116 26 C -0.076 4.076 27 C -0.081 4.081 28 C -0.122 4.122 29 C -0.121 4.121 30 C -0.129 4.129 31 C -0.137 4.137 32 C -0.056 4.056 33 H 0.267 0.733 34 H 0.043 0.957 35 H 0.035 0.965 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.142 0.858 39 H 0.167 0.833 40 H 0.170 0.830 41 H 0.171 0.829 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.097 0.903 50 H 0.149 0.851 51 H 0.149 0.851 52 H 0.137 0.863 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.497 -2.107 -7.018 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.174 4.174 3 Si 0.753 3.247 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.164 1.164 7 C -0.567 4.567 8 H 0.051 0.949 9 C 0.101 3.899 10 N -0.318 5.318 11 C 0.045 3.955 12 C -0.043 4.043 13 C -0.189 4.189 14 C -0.102 4.102 15 C -0.185 4.185 16 C -0.079 4.079 17 N -0.207 5.207 18 C 0.332 3.668 19 O -0.436 6.436 20 C -0.195 4.195 21 H 0.134 0.866 22 C -0.161 4.161 23 C -0.048 4.048 24 C -0.099 4.099 25 C -0.153 4.153 26 C -0.113 4.113 27 C -0.081 4.081 28 C -0.140 4.140 29 C -0.139 4.139 30 C -0.147 4.147 31 C -0.155 4.155 32 C -0.056 4.056 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.160 0.840 39 H 0.185 0.815 40 H 0.188 0.812 41 H 0.188 0.812 42 H 0.123 0.877 43 H 0.107 0.893 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.101 0.899 48 H 0.098 0.902 49 H 0.115 0.885 50 H 0.167 0.833 51 H 0.167 0.833 52 H 0.154 0.846 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 17.315 -3.271 -7.571 19.179 hybrid contribution -0.562 1.690 1.151 2.120 sum 16.753 -1.581 -6.419 18.010 Atomic orbital electron populations 1.70043 1.08168 1.28160 1.51503 1.25649 0.95325 1.02515 0.93876 0.85972 0.79969 0.79191 0.79546 1.19063 1.20853 1.16380 1.21397 0.90742 0.93233 1.51367 0.94896 1.19591 0.93286 0.79093 0.97914 1.47792 1.63930 1.15446 1.04653 1.20125 0.90802 0.98320 0.86230 1.21589 0.95526 0.92866 0.94291 1.22241 0.99329 0.98391 0.98941 1.21985 0.91646 0.98739 0.97853 1.22522 1.02206 0.95791 0.97954 1.23257 0.92573 0.97162 0.94946 1.67536 1.01922 1.27904 1.23357 1.19765 0.76287 0.85804 0.84952 1.90605 1.47343 1.18266 1.87376 1.22264 1.07536 0.99841 0.89900 0.86550 1.22946 0.90093 1.02668 1.00426 1.20273 0.97435 0.96176 0.90919 1.21134 1.00607 0.91134 0.96980 1.21571 0.99771 0.99877 0.94096 1.20418 0.99871 0.89647 1.01330 1.19905 0.97419 0.96893 0.93861 1.21471 1.00115 0.94393 0.98024 1.21406 0.98623 0.94865 0.99003 1.21329 0.98733 1.00656 0.94018 1.21209 1.01112 0.93821 0.99343 1.18841 0.99321 0.93046 0.94373 0.92352 0.93861 0.94759 0.88319 0.90757 0.83990 0.81528 0.81229 0.81218 0.87736 0.89255 0.91900 0.92850 0.92021 0.89933 0.90220 0.88473 0.83295 0.83291 0.84558 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.35 13.96 21.45 0.30 -55.05 16 2 C 0.03 1.37 5.47 84.65 0.46 1.83 16 3 Si 0.93 39.92 27.47 68.60 1.88 41.81 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 7 C -0.53 -28.16 9.94 25.60 0.25 -27.91 16 8 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 9 C 0.22 9.90 4.06 85.63 0.35 10.25 16 10 N -0.59 -25.22 2.44 -830.50 -2.03 -27.25 16 11 C 0.17 6.58 5.71 85.63 0.49 7.07 16 12 C 0.10 3.31 6.36 42.55 0.27 3.58 16 13 C -0.17 -4.75 9.72 22.36 0.22 -4.53 16 14 C -0.08 -1.64 10.18 22.47 0.23 -1.41 16 15 C -0.17 -3.34 10.11 22.36 0.23 -3.11 16 16 C 0.08 2.06 11.18 84.67 0.95 3.01 16 17 N -0.50 -17.57 10.27 -183.88 -1.89 -19.46 16 18 C 0.54 23.64 7.44 87.66 0.65 24.29 16 19 O -0.56 -25.45 12.74 -3.02 -0.04 -25.49 16 20 C -0.17 -6.89 4.56 -11.60 -0.05 -6.95 16 21 H 0.12 4.60 4.86 -2.39 -0.01 4.59 16 22 C -0.12 -4.63 9.33 30.54 0.29 -4.34 16 23 C -0.05 -1.63 2.23 -52.97 -0.12 -1.75 16 24 C -0.06 -2.02 4.01 30.82 0.12 -1.90 16 25 C -0.12 -2.87 5.92 30.61 0.18 -2.69 16 26 C -0.08 -1.61 5.66 29.63 0.17 -1.45 16 27 C -0.08 -2.05 5.75 -19.88 -0.11 -2.17 16 28 C -0.12 -2.52 9.63 22.38 0.22 -2.31 16 29 C -0.12 -2.46 10.04 22.22 0.22 -2.23 16 30 C -0.13 -3.14 10.06 22.24 0.22 -2.92 16 31 C -0.14 -4.09 8.91 22.30 0.20 -3.89 16 32 C -0.06 -1.71 5.59 -19.88 -0.11 -1.82 16 33 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 34 H 0.04 1.82 7.13 -2.38 -0.02 1.80 16 35 H 0.03 1.50 5.42 -2.39 -0.01 1.49 16 36 H 0.10 3.64 7.97 -2.38 -0.02 3.62 16 37 H 0.07 3.10 7.42 -2.39 -0.02 3.08 16 38 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 39 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.17 3.55 8.06 -2.91 -0.02 3.52 16 42 H 0.10 3.77 8.02 -2.39 -0.02 3.75 16 43 H 0.09 3.49 8.13 -2.39 -0.02 3.47 16 44 H 0.06 2.37 6.47 -2.38 -0.02 2.35 16 45 H 0.05 1.91 7.90 -2.39 -0.02 1.89 16 46 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 47 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 48 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.10 1.55 8.10 -2.39 -0.02 1.53 16 50 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 51 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 52 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 53 H 0.11 3.49 6.32 -2.91 -0.02 3.47 16 Total: -1.00 -71.29 424.44 4.41 -66.88 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: 0.86 Total: 39.87 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 5.32 Total: -21.32 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -3.62 Total: -101.75 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.04 Total: -25.49 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.88 Total: 41.81 kcal Total: -71.29 4.41 -66.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089858199.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.360 kcal (2) G-P(sol) polarization free energy of solvation -71.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds