Wall clock time and date at job start Tue Mar 31 2020 05:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99682 * 2 1 4 4 H 1.48504 * 109.46798 * 240.00021 * 3 2 1 5 5 H 1.48495 * 109.47351 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47008 * 120.00149 * 3 2 1 7 7 C 1.37874 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99876 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00122 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.47043 * 180.02562 * 9 7 2 11 11 C 1.35032 * 125.92385 * 125.00362 * 10 9 7 12 12 C 1.35095 * 107.97643 * 179.97438 * 11 10 9 13 13 C 1.50701 * 126.07566 * 179.97438 * 12 11 10 14 14 N 1.46905 * 109.46573 * 106.05999 * 13 12 11 15 15 C 1.46467 * 111.00075 * 289.98372 * 14 13 12 16 16 C 1.53181 * 109.90021 * 163.00408 * 15 14 13 17 17 S 1.81814 * 108.67805 * 62.63745 * 16 15 14 18 18 O 1.42100 * 108.70282 * 193.42660 * 17 16 15 19 19 O 1.42094 * 108.82888 * 61.98774 * 17 16 15 20 20 C 1.81812 * 101.02076 * 307.68339 * 17 16 15 21 21 C 1.46472 * 110.99473 * 164.13494 * 14 13 12 22 22 C 1.40844 * 107.84579 * 0.22855 * 12 11 10 23 23 C 1.48421 * 126.03280 * 179.77468 * 22 12 11 24 24 C 1.39316 * 120.11848 * 316.62792 * 23 22 12 25 25 C 1.38033 * 119.87581 * 179.72406 * 24 23 22 26 26 C 1.38317 * 120.11724 * 0.55832 * 25 24 23 27 27 C 1.38322 * 120.24343 * 359.71590 * 26 25 24 28 28 C 1.38022 * 120.11687 * 0.02562 * 27 26 25 29 29 N 1.31624 * 107.92444 * 359.61419 * 22 12 11 30 30 H 0.96998 * 120.00063 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47103 * 60.00474 * 9 7 2 32 32 H 1.08997 * 109.47635 * 300.00424 * 9 7 2 33 33 H 1.07999 * 126.01969 * 359.97438 * 11 10 9 34 34 H 1.09003 * 109.47378 * 346.06384 * 13 12 11 35 35 H 1.08997 * 109.47092 * 226.05868 * 13 12 11 36 36 H 1.09003 * 109.40084 * 283.13850 * 15 14 13 37 37 H 1.09002 * 109.40332 * 42.87253 * 15 14 13 38 38 H 1.08993 * 109.60217 * 302.87979 * 16 15 14 39 39 H 1.09001 * 109.60454 * 182.39743 * 16 15 14 40 40 H 1.08996 * 109.60363 * 292.55994 * 20 17 16 41 41 H 1.09000 * 109.60707 * 172.07255 * 20 17 16 42 42 H 1.09001 * 109.40094 * 317.12702 * 21 14 13 43 43 H 1.08999 * 109.40707 * 76.95562 * 21 14 13 44 44 H 1.07999 * 120.06606 * 359.97438 * 24 23 22 45 45 H 1.08000 * 119.93984 * 180.27419 * 25 24 23 46 46 H 1.08002 * 119.87987 * 179.74253 * 26 25 24 47 47 H 1.07998 * 119.93742 * 180.02562 * 27 26 25 48 48 H 1.08004 * 120.05556 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.2413 -4.6224 0.8952 12 6 3.2577 -5.4443 0.5538 13 6 3.6645 -6.7011 1.2792 14 7 3.2487 -7.8736 0.4979 15 6 1.7915 -8.0211 0.5077 16 6 1.3547 -8.9585 -0.6223 17 16 2.0720 -10.6025 -0.3250 18 8 1.9361 -11.3794 -1.5071 19 8 1.5659 -11.1086 0.9025 20 6 3.8266 -10.1811 -0.1028 21 6 3.9365 -9.0820 0.9586 22 6 3.8732 -4.9147 -0.5970 23 6 5.0375 -5.4964 -1.3105 24 6 6.1249 -5.9865 -0.5907 25 6 7.2026 -6.5316 -1.2591 26 6 7.2091 -6.5812 -2.6414 27 6 6.1344 -6.0909 -3.3612 28 6 5.0494 -5.5485 -2.7027 29 7 3.2314 -3.8148 -0.9299 30 1 -0.4850 0.8400 -0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 1.5764 -4.7505 1.7364 34 1 3.1845 -6.7276 2.2575 35 1 4.7471 -6.7137 1.4051 36 1 1.4760 -8.4362 1.4649 37 1 1.3278 -7.0446 0.3676 38 1 1.7108 -8.5713 -1.5768 39 1 0.2672 -9.0313 -0.6373 40 1 4.2386 -9.8215 -1.0456 41 1 4.3758 -11.0633 0.2262 42 1 4.9875 -8.8547 1.1369 43 1 3.4788 -9.4283 1.8852 44 1 6.1231 -5.9437 0.4885 45 1 8.0442 -6.9159 -0.7020 46 1 8.0561 -7.0048 -3.1606 47 1 6.1445 -6.1325 -4.4403 48 1 4.2107 -5.1663 -3.2657 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093047476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:28 Heat of formation + Delta-G solvation = 43.109504 kcal Electronic energy + Delta-G solvation = -32340.471244 eV Core-core repulsion = 28103.505276 eV Total energy + Delta-G solvation = -4236.965968 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.78544 -38.65601 -38.49018 -37.10653 -36.22643 -34.01845 -32.56452 -32.17330 -31.88657 -30.74760 -30.18141 -29.19711 -27.14391 -24.84012 -24.26657 -23.74210 -22.37316 -21.96155 -21.36114 -20.00402 -19.27248 -18.98231 -17.25290 -16.78229 -16.66713 -16.51812 -16.07089 -15.92160 -15.70905 -15.29107 -15.01185 -14.83870 -14.73267 -14.27465 -13.98123 -13.67554 -13.50939 -13.29912 -13.22619 -12.87681 -12.74637 -12.49396 -12.38075 -12.33400 -12.30956 -12.21431 -12.10218 -12.03966 -11.85300 -11.60260 -11.07683 -11.03156 -10.92697 -10.88430 -10.79667 -10.33296 -10.32131 -10.02371 -9.83622 -9.08710 -8.79218 -8.70342 -8.57244 -8.27216 -7.69623 -6.33062 -4.38695 -0.17857 1.35327 1.55723 2.43179 2.55812 3.04582 3.20353 3.24197 3.27465 3.39614 3.42792 3.60791 3.89006 4.07437 4.24605 4.26094 4.44581 4.60121 4.73294 4.83233 4.88099 4.97405 5.01909 5.03415 5.06103 5.14516 5.22713 5.33716 5.39224 5.46392 5.48955 5.53257 5.66189 5.67905 5.68602 5.76430 6.03367 6.10179 6.22629 6.33653 6.51312 6.62092 6.68136 6.75851 6.82692 6.86984 6.94517 7.10070 7.22919 7.59660 7.76498 7.85571 8.43963 8.69501 9.27766 10.75796 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009750 B = 0.002819 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.023513 B = 9930.489935 C =11816.129372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.532 4.532 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.319 5.319 11 C 0.054 3.946 12 C -0.247 4.247 13 C 0.146 3.854 14 N -0.548 5.548 15 C 0.066 3.934 16 C -0.590 4.590 17 S 2.408 3.592 18 O -0.947 6.947 19 O -0.944 6.944 20 C -0.593 4.593 21 C 0.066 3.934 22 C 0.093 3.907 23 C 0.024 3.976 24 C -0.100 4.100 25 C -0.123 4.123 26 C -0.127 4.127 27 C -0.121 4.121 28 C -0.097 4.097 29 N -0.264 5.264 30 H 0.269 0.731 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.164 0.836 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.098 0.902 43 H 0.055 0.945 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.341 -18.925 1.187 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.087 0.913 9 C 0.139 3.861 10 N -0.098 5.098 11 C -0.097 4.097 12 C -0.260 4.260 13 C 0.019 3.981 14 N -0.273 5.273 15 C -0.063 4.063 16 C -0.721 4.721 17 S 2.591 3.409 18 O -0.944 6.944 19 O -0.941 6.941 20 C -0.724 4.724 21 C -0.063 4.063 22 C -0.070 4.070 23 C 0.022 3.978 24 C -0.119 4.119 25 C -0.141 4.141 26 C -0.146 4.146 27 C -0.139 4.139 28 C -0.116 4.116 29 N -0.087 5.087 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.181 0.819 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.161 0.839 41 H 0.152 0.848 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.137 0.863 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.639 -18.424 -0.071 20.349 hybrid contribution 0.394 1.000 1.195 1.607 sum 9.033 -17.424 1.125 19.659 Atomic orbital electron populations 1.69900 1.06065 1.27881 1.49404 1.24932 0.94980 0.99585 0.94416 0.86381 0.79405 0.81696 0.79026 1.19831 1.20989 1.19997 1.21181 0.93952 0.89279 1.52577 0.91309 1.19770 0.85667 0.81343 0.99285 1.49411 1.23327 1.19187 1.17888 1.22253 0.99910 0.90608 0.96908 1.19480 1.03105 1.01132 1.02276 1.20225 1.00188 0.85124 0.92545 1.61184 1.05766 1.03258 1.57087 1.21730 0.88393 1.01452 0.94753 1.30160 1.12345 1.20238 1.09324 1.08228 0.79284 0.78099 0.75256 1.93588 1.85439 1.66787 1.48617 1.93581 1.77911 1.77378 1.45232 1.30174 1.24649 1.07854 1.09676 1.21734 1.02132 0.88479 0.93926 1.20396 0.96714 0.94270 0.95661 1.17750 0.91217 0.96687 0.92151 1.21068 0.92834 0.98376 0.99637 1.20961 0.98160 1.00545 0.94438 1.21089 0.98396 1.00801 0.94267 1.21033 0.93950 0.99276 0.99676 1.21237 0.98502 0.98303 0.93562 1.77707 1.00703 1.16403 1.13917 0.92176 0.93587 0.92724 0.81893 0.93754 0.89847 0.92688 0.87771 0.83958 0.84687 0.83915 0.84772 0.88369 0.92681 0.86114 0.86384 0.86606 0.86310 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.53 -14.23 9.23 -34.44 -0.32 -14.54 16 8 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 9 C 0.26 6.13 6.26 -5.19 -0.03 6.10 16 10 N -0.32 -6.67 3.67 -62.58 -0.23 -6.90 16 11 C 0.05 0.89 10.64 -17.26 -0.18 0.71 16 12 C -0.25 -3.67 4.73 -104.75 -0.50 -4.17 16 13 C 0.15 1.56 4.97 -4.97 -0.02 1.54 16 14 N -0.55 -5.29 4.37 -236.55 -1.03 -6.33 16 15 C 0.07 0.63 5.25 -3.97 -0.02 0.61 16 16 C -0.59 -5.06 6.58 37.25 0.25 -4.81 16 17 S 2.41 22.32 5.34 -107.50 -0.57 21.75 16 18 O -0.95 -12.09 18.11 -57.81 -1.05 -13.13 16 19 O -0.94 -11.49 18.10 -57.81 -1.05 -12.54 16 20 C -0.59 -4.09 6.58 37.26 0.24 -3.84 16 21 C 0.07 0.50 5.41 -3.96 -0.02 0.47 16 22 C 0.09 1.62 6.66 -82.78 -0.55 1.06 16 23 C 0.02 0.36 5.74 -104.90 -0.60 -0.25 16 24 C -0.10 -1.22 8.89 -39.26 -0.35 -1.57 16 25 C -0.12 -1.29 10.03 -39.63 -0.40 -1.69 16 26 C -0.13 -1.33 10.04 -39.52 -0.40 -1.73 16 27 C -0.12 -1.42 10.03 -39.63 -0.40 -1.82 16 28 C -0.10 -1.38 9.78 -39.26 -0.38 -1.77 16 29 N -0.26 -5.61 12.44 33.43 0.42 -5.19 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 1.28 8.07 -51.93 -0.42 0.86 16 33 H 0.16 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 35 H 0.08 0.80 5.37 -51.93 -0.28 0.52 16 36 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 37 H 0.10 1.14 6.52 -51.93 -0.34 0.80 16 38 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.62 7.69 -51.93 -0.40 0.22 16 43 H 0.06 0.38 7.93 -51.93 -0.41 -0.03 16 44 H 0.12 1.33 6.27 -52.49 -0.33 1.00 16 45 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 47 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 48 H 0.12 1.84 8.06 -52.48 -0.42 1.41 16 LS Contribution 407.40 15.07 6.14 6.14 Total: -1.00 -34.47 407.40 -12.22 -46.69 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.78 Total: 1.60 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -3.78 Total: -24.08 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -0.11 Total: -42.29 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -2.09 Total: -25.67 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 22.32 SS G_CDS: -0.57 Total: 21.75 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.47 -12.22 -46.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093047476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.801 kcal (2) G-P(sol) polarization free energy of solvation -34.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds