Wall clock time and date at job start Tue Mar 31 2020 05:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99682 * 2 1 4 4 H 1.48504 * 109.46798 * 240.00021 * 3 2 1 5 5 H 1.48495 * 109.47351 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47008 * 120.00149 * 3 2 1 7 7 C 1.37874 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99876 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00122 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.47043 * 180.02562 * 9 7 2 11 11 C 1.35032 * 125.92385 * 125.00362 * 10 9 7 12 12 C 1.35095 * 107.97643 * 179.97438 * 11 10 9 13 13 C 1.50701 * 126.07566 * 179.97438 * 12 11 10 14 14 N 1.46905 * 109.46573 * 106.05999 * 13 12 11 15 15 C 1.46467 * 111.00075 * 289.98372 * 14 13 12 16 16 C 1.53181 * 109.90021 * 163.00408 * 15 14 13 17 17 S 1.81814 * 108.67805 * 62.63745 * 16 15 14 18 18 O 1.42100 * 108.70282 * 193.42660 * 17 16 15 19 19 O 1.42094 * 108.82888 * 61.98774 * 17 16 15 20 20 C 1.81812 * 101.02076 * 307.68339 * 17 16 15 21 21 C 1.46472 * 110.99473 * 164.13494 * 14 13 12 22 22 C 1.40844 * 107.84579 * 0.22855 * 12 11 10 23 23 C 1.48421 * 126.03280 * 179.77468 * 22 12 11 24 24 C 1.39316 * 120.11848 * 316.62792 * 23 22 12 25 25 C 1.38033 * 119.87581 * 179.72406 * 24 23 22 26 26 C 1.38317 * 120.11724 * 0.55832 * 25 24 23 27 27 C 1.38322 * 120.24343 * 359.71590 * 26 25 24 28 28 C 1.38022 * 120.11687 * 0.02562 * 27 26 25 29 29 N 1.31624 * 107.92444 * 359.61419 * 22 12 11 30 30 H 0.96998 * 120.00063 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47103 * 60.00474 * 9 7 2 32 32 H 1.08997 * 109.47635 * 300.00424 * 9 7 2 33 33 H 1.07999 * 126.01969 * 359.97438 * 11 10 9 34 34 H 1.09003 * 109.47378 * 346.06384 * 13 12 11 35 35 H 1.08997 * 109.47092 * 226.05868 * 13 12 11 36 36 H 1.09003 * 109.40084 * 283.13850 * 15 14 13 37 37 H 1.09002 * 109.40332 * 42.87253 * 15 14 13 38 38 H 1.08993 * 109.60217 * 302.87979 * 16 15 14 39 39 H 1.09001 * 109.60454 * 182.39743 * 16 15 14 40 40 H 1.08996 * 109.60363 * 292.55994 * 20 17 16 41 41 H 1.09000 * 109.60707 * 172.07255 * 20 17 16 42 42 H 1.09001 * 109.40094 * 317.12702 * 21 14 13 43 43 H 1.08999 * 109.40707 * 76.95562 * 21 14 13 44 44 H 1.07999 * 120.06606 * 359.97438 * 24 23 22 45 45 H 1.08000 * 119.93984 * 180.27419 * 25 24 23 46 46 H 1.08002 * 119.87987 * 179.74253 * 26 25 24 47 47 H 1.07998 * 119.93742 * 180.02562 * 27 26 25 48 48 H 1.08004 * 120.05556 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.2413 -4.6224 0.8952 12 6 3.2577 -5.4443 0.5538 13 6 3.6645 -6.7011 1.2792 14 7 3.2487 -7.8736 0.4979 15 6 1.7915 -8.0211 0.5077 16 6 1.3547 -8.9585 -0.6223 17 16 2.0720 -10.6025 -0.3250 18 8 1.9361 -11.3794 -1.5071 19 8 1.5659 -11.1086 0.9025 20 6 3.8266 -10.1811 -0.1028 21 6 3.9365 -9.0820 0.9586 22 6 3.8732 -4.9147 -0.5970 23 6 5.0375 -5.4964 -1.3105 24 6 6.1249 -5.9865 -0.5907 25 6 7.2026 -6.5316 -1.2591 26 6 7.2091 -6.5812 -2.6414 27 6 6.1344 -6.0909 -3.3612 28 6 5.0494 -5.5485 -2.7027 29 7 3.2314 -3.8148 -0.9299 30 1 -0.4850 0.8400 -0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 1.5764 -4.7505 1.7364 34 1 3.1845 -6.7276 2.2575 35 1 4.7471 -6.7137 1.4051 36 1 1.4760 -8.4362 1.4649 37 1 1.3278 -7.0446 0.3676 38 1 1.7108 -8.5713 -1.5768 39 1 0.2672 -9.0313 -0.6373 40 1 4.2386 -9.8215 -1.0456 41 1 4.3758 -11.0633 0.2262 42 1 4.9875 -8.8547 1.1369 43 1 3.4788 -9.4283 1.8852 44 1 6.1231 -5.9437 0.4885 45 1 8.0442 -6.9159 -0.7020 46 1 8.0561 -7.0048 -3.1606 47 1 6.1445 -6.1325 -4.4403 48 1 4.2107 -5.1663 -3.2657 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093047476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:27 Heat of formation + Delta-G solvation = 19.045952 kcal Electronic energy + Delta-G solvation = -32341.514718 eV Core-core repulsion = 28103.505276 eV Total energy + Delta-G solvation = -4238.009442 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.09265 -39.62564 -39.25830 -37.95501 -37.07960 -35.77361 -34.06781 -33.00438 -32.73005 -31.67698 -31.50307 -30.29837 -28.69531 -26.00667 -25.19419 -24.95193 -23.35469 -23.14584 -22.16778 -21.29624 -20.49040 -19.73456 -18.66586 -18.05613 -17.80194 -17.33832 -17.23246 -16.71775 -16.57379 -16.42197 -16.19987 -15.86263 -15.70906 -15.54743 -15.26727 -14.69840 -14.45505 -14.31113 -14.10009 -14.03217 -13.94055 -13.68683 -13.43754 -13.35977 -13.24092 -13.13202 -13.11197 -13.02032 -12.82778 -12.75363 -12.69810 -12.47403 -12.26906 -11.96805 -11.84479 -11.69543 -11.62255 -11.30078 -11.01240 -10.76512 -10.40222 -9.70558 -9.50593 -9.30592 -8.99457 -8.36547 -6.50870 -0.89580 0.36019 0.64071 1.22685 1.35091 1.37357 1.45870 1.74547 1.85796 1.97538 2.32042 2.72566 2.81881 2.95161 3.08834 3.14811 3.59646 3.72485 3.78398 3.94786 4.01467 4.06664 4.18908 4.22760 4.25476 4.34540 4.38317 4.41705 4.46379 4.62481 4.70515 4.78532 4.80868 4.85298 4.87683 4.89544 4.91659 5.02196 5.12815 5.17594 5.24792 5.30541 5.53476 5.57959 5.73002 5.76200 5.84988 5.94080 5.96589 6.13330 6.22211 6.30172 6.61905 7.06484 7.19563 8.70644 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009750 B = 0.002819 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.023513 B = 9930.489935 C =11816.129372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.020 3.980 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.274 3.726 10 N -0.350 5.350 11 C 0.046 3.954 12 C -0.230 4.230 13 C 0.148 3.852 14 N -0.556 5.556 15 C 0.062 3.938 16 C -0.588 4.588 17 S 2.416 3.584 18 O -0.988 6.988 19 O -0.975 6.975 20 C -0.573 4.573 21 C 0.060 3.940 22 C 0.099 3.901 23 C -0.005 4.005 24 C -0.099 4.099 25 C -0.114 4.114 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.120 4.120 29 N -0.326 5.326 30 H 0.273 0.727 31 H 0.015 0.985 32 H 0.055 0.945 33 H 0.190 0.810 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.152 0.848 41 H 0.163 0.837 42 H 0.122 0.878 43 H 0.066 0.934 44 H 0.135 0.865 45 H 0.155 0.845 46 H 0.149 0.851 47 H 0.135 0.865 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.810 -20.662 2.414 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.181 4.181 3 Si 0.792 3.208 4 H -0.201 1.201 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.069 0.931 9 C 0.155 3.845 10 N -0.130 5.130 11 C -0.103 4.103 12 C -0.242 4.242 13 C 0.021 3.979 14 N -0.282 5.282 15 C -0.067 4.067 16 C -0.719 4.719 17 S 2.603 3.397 18 O -0.985 6.985 19 O -0.973 6.973 20 C -0.706 4.706 21 C -0.068 4.068 22 C -0.065 4.065 23 C -0.007 4.007 24 C -0.118 4.118 25 C -0.132 4.132 26 C -0.137 4.137 27 C -0.143 4.143 28 C -0.140 4.140 29 N -0.150 5.150 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.207 0.793 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.170 0.830 41 H 0.181 0.819 42 H 0.141 0.859 43 H 0.084 0.916 44 H 0.153 0.847 45 H 0.172 0.828 46 H 0.166 0.834 47 H 0.153 0.847 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.081 -20.205 1.163 23.570 hybrid contribution -0.547 1.423 0.759 1.703 sum 11.534 -18.782 1.922 22.125 Atomic orbital electron populations 1.69982 1.07199 1.28832 1.49896 1.25716 0.95811 1.02679 0.93870 0.85450 0.78356 0.78022 0.78940 1.20143 1.19738 1.19188 1.21353 0.93273 0.91065 1.52855 0.93117 1.19216 0.85831 0.81857 0.97614 1.49034 1.24086 1.20029 1.19826 1.22862 1.00821 0.89663 0.96907 1.19928 1.01262 1.01974 1.01059 1.20300 1.01479 0.83449 0.92628 1.61073 1.05692 1.03959 1.57446 1.21740 0.88696 1.00632 0.95589 1.30130 1.13177 1.19593 1.09040 1.07810 0.80546 0.77621 0.73714 1.93534 1.86681 1.68301 1.49992 1.93535 1.79453 1.78286 1.45998 1.30035 1.21212 1.08968 1.10370 1.21924 1.03289 0.87334 0.94250 1.21016 0.96585 0.92927 0.95978 1.17869 0.91702 0.98679 0.92438 1.21245 0.92341 0.97859 1.00346 1.21368 0.98198 0.98961 0.94639 1.21509 0.98404 0.99190 0.94603 1.21256 0.93523 0.98765 1.00729 1.21195 0.99103 0.99973 0.93694 1.77617 1.02349 1.19246 1.15763 0.91831 0.96703 0.92761 0.79293 0.91915 0.87897 0.91422 0.89674 0.84135 0.83878 0.82969 0.81903 0.85947 0.91591 0.84707 0.82783 0.83366 0.84695 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.06 13.29 21.45 0.28 -51.77 16 2 C 0.02 1.09 5.46 84.65 0.46 1.55 16 3 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -30.71 9.23 25.60 0.24 -30.47 16 8 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 9 C 0.27 13.97 6.26 85.63 0.54 14.50 16 10 N -0.35 -15.51 3.67 -351.91 -1.29 -16.80 16 11 C 0.05 1.54 10.64 83.48 0.89 2.43 16 12 C -0.23 -6.71 4.73 -19.95 -0.09 -6.81 16 13 C 0.15 2.77 4.97 85.56 0.42 3.19 16 14 N -0.56 -9.31 4.37 -902.32 -3.95 -13.26 16 15 C 0.06 1.12 5.25 86.45 0.45 1.58 16 16 C -0.59 -9.87 6.58 72.04 0.47 -9.39 16 17 S 2.42 42.08 5.34 -56.49 -0.30 41.77 16 18 O -0.99 -24.96 18.11 -127.39 -2.31 -27.27 16 19 O -0.98 -22.77 18.10 -127.39 -2.31 -25.07 16 20 C -0.57 -5.87 6.58 72.05 0.47 -5.39 16 21 C 0.06 0.65 5.41 86.45 0.47 1.12 16 22 C 0.10 3.51 6.66 42.53 0.28 3.79 16 23 C 0.00 -0.14 5.74 -20.04 -0.11 -0.26 16 24 C -0.10 -2.12 8.89 22.48 0.20 -1.92 16 25 C -0.11 -1.85 10.03 22.24 0.22 -1.63 16 26 C -0.12 -2.00 10.04 22.31 0.22 -1.78 16 27 C -0.12 -2.71 10.03 22.24 0.22 -2.48 16 28 C -0.12 -3.48 9.78 22.48 0.22 -3.26 16 29 N -0.33 -14.75 12.44 -48.16 -0.60 -15.35 16 30 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 2.70 8.07 -2.39 -0.02 2.68 16 33 H 0.19 5.05 8.06 -2.91 -0.02 5.03 16 34 H 0.06 0.97 8.06 -2.39 -0.02 0.95 16 35 H 0.10 1.54 5.37 -2.39 -0.01 1.53 16 36 H 0.07 1.04 7.93 -2.39 -0.02 1.02 16 37 H 0.08 1.87 6.52 -2.39 -0.02 1.85 16 38 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.12 0.84 7.69 -2.39 -0.02 0.82 16 43 H 0.07 0.63 7.93 -2.39 -0.02 0.62 16 44 H 0.14 2.44 6.27 -2.91 -0.02 2.42 16 45 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 46 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 47 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 48 H 0.10 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -79.58 407.40 -1.89 -81.47 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.97 Total: 15.92 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 5.58 Total: -35.23 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -5.55 Total: -97.18 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -4.61 Total: -52.34 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 42.08 SS G_CDS: -0.30 Total: 41.77 kcal Total: -79.58 -1.89 -81.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093047476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.519 kcal (2) G-P(sol) polarization free energy of solvation -79.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds