Wall clock time and date at job start Tue Mar 31 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99922 * 2 1 4 4 H 1.48500 * 109.46901 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47517 * 300.00386 * 3 2 1 6 6 H 1.48503 * 109.47096 * 60.01095 * 3 2 1 7 7 C 1.37875 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99819 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47026 * 177.25467 * 9 7 2 11 11 C 1.46896 * 111.00389 * 164.66037 * 10 9 7 12 12 C 1.50704 * 109.47226 * 293.95483 * 11 10 9 13 13 C 1.38225 * 119.62015 * 94.99086 * 12 11 10 14 14 C 1.38632 * 119.16054 * 180.02562 * 13 12 11 15 15 C 1.38673 * 118.42014 * 0.02562 * 14 13 12 16 16 C 1.38183 * 119.16357 * 0.27349 * 15 14 13 17 17 N 1.31861 * 119.61447 * 275.02254 * 12 11 10 18 18 C 1.46901 * 110.99846 * 288.61107 * 10 9 7 19 19 C 1.50701 * 109.47412 * 170.83764 * 18 10 9 20 20 C 1.38158 * 119.97770 * 103.22238 * 19 18 10 21 21 C 1.38713 * 119.95084 * 179.75411 * 20 19 18 22 22 O 1.35915 * 120.04439 * 180.23133 * 21 20 19 23 23 C 1.38741 * 119.90776 * 0.54014 * 21 20 19 24 24 C 1.38120 * 119.95728 * 359.71036 * 23 21 20 25 25 C 1.38325 * 119.97465 * 283.49574 * 19 18 10 26 26 Br 1.89104 * 119.95528 * 359.97438 * 25 19 18 27 27 H 0.97004 * 119.99689 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47659 * 57.25554 * 9 7 2 29 29 H 1.09000 * 109.47330 * 297.24740 * 9 7 2 30 30 H 1.08997 * 109.47746 * 173.95172 * 11 10 9 31 31 H 1.09001 * 109.47297 * 53.94942 * 11 10 9 32 32 H 1.08000 * 120.41874 * 0.05190 * 13 12 11 33 33 H 1.07998 * 120.78703 * 180.02562 * 14 13 12 34 34 H 1.07994 * 120.41853 * 180.02562 * 15 14 13 35 35 H 1.07995 * 119.62159 * 179.70019 * 16 15 14 36 36 H 1.09005 * 109.47310 * 290.83490 * 18 10 9 37 37 H 1.09001 * 109.47368 * 50.83482 * 18 10 9 38 38 H 1.08000 * 120.02609 * 359.97438 * 20 19 18 39 39 H 0.96704 * 113.99640 * 270.31401 * 22 21 20 40 40 H 1.08001 * 120.02123 * 179.68558 * 23 21 20 41 41 H 1.07998 * 119.97964 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2123 6 1 1.8905 2.3963 1.2127 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2041 -3.6149 -0.0675 11 6 1.5561 -4.8832 0.2922 12 6 1.1493 -4.8458 1.7428 13 6 -0.1370 -4.4704 2.0821 14 6 -0.5009 -4.4388 3.4194 15 6 0.4471 -4.7871 4.3698 16 6 1.7155 -5.1460 3.9555 17 7 2.0247 -5.1711 2.6737 18 6 2.8238 -3.6988 -1.3967 19 6 3.9494 -4.7003 -1.3640 20 6 3.7706 -5.9579 -1.9075 21 6 4.8087 -6.8775 -1.8817 22 8 4.6363 -8.1136 -2.4200 23 6 6.0210 -6.5361 -1.2998 24 6 6.1939 -5.2796 -0.7529 25 6 5.1590 -4.3618 -0.7847 26 35 5.3987 -2.6422 -0.0353 27 1 -0.4850 0.8401 0.0004 28 1 0.5875 -2.5357 -0.8646 29 1 0.6621 -2.5787 0.9133 30 1 2.2530 -5.7058 0.1314 31 1 0.6726 -5.0289 -0.3293 32 1 -0.8496 -4.2054 1.3151 33 1 -1.4989 -4.1498 3.7141 34 1 0.1982 -4.7741 5.4206 35 1 2.4609 -5.4139 4.6896 36 1 2.0778 -4.0145 -2.1262 37 1 3.2155 -2.7211 -1.6775 38 1 2.8244 -6.2234 -2.3554 39 1 4.2966 -8.7702 -1.7966 40 1 6.8288 -7.2525 -1.2741 41 1 7.1374 -5.0136 -0.2994 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:10 Heat of formation + Delta-G solvation = 33.389288 kcal Electronic energy + Delta-G solvation = -25942.955286 eV Core-core repulsion = 22255.544670 eV Total energy + Delta-G solvation = -3687.410617 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 376.053 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.97775 -39.63477 -37.37428 -36.07400 -32.67701 -32.21714 -31.89634 -31.32712 -30.64619 -28.31800 -27.41395 -26.31639 -24.10779 -23.14851 -22.44542 -21.93240 -21.38379 -19.98297 -17.93934 -16.61542 -16.37224 -16.11280 -15.95074 -15.64883 -15.27953 -15.19084 -14.59425 -14.56538 -13.89158 -13.75704 -13.48052 -13.07546 -12.89492 -12.68050 -12.47582 -12.12921 -11.91277 -11.84125 -11.55555 -11.35156 -11.05873 -11.02156 -10.71612 -10.61782 -10.31830 -10.20295 -10.06734 -9.51878 -9.37899 -9.02572 -8.97487 -8.78675 -8.55949 -8.36542 -8.19258 -7.26839 -5.99205 -3.97286 1.15043 1.34298 1.51680 1.70181 2.17571 3.31815 3.39918 3.44579 3.54368 4.15058 4.18379 4.47071 4.70943 4.84501 4.91782 5.04508 5.15736 5.24290 5.29419 5.37632 5.41823 5.49654 5.53563 5.66665 5.80295 5.84232 5.93164 6.00301 6.08978 6.15585 6.18707 6.37987 6.42196 6.51043 6.55754 6.60149 6.73444 7.07567 7.22559 7.28383 7.57806 7.87986 8.05237 8.15282 8.46295 8.55494 9.13944 9.66295 11.12030 Molecular weight = 376.05amu Principal moments of inertia in cm(-1) A = 0.007346 B = 0.005323 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3810.488806 B = 5258.798694 C = 7409.155518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.887 3.113 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.499 4.499 8 H 0.078 0.922 9 C 0.188 3.812 10 N -0.509 5.509 11 C 0.098 3.902 12 C 0.156 3.844 13 C -0.154 4.154 14 C -0.077 4.077 15 C -0.184 4.184 16 C 0.093 3.907 17 N -0.465 5.465 18 C 0.092 3.908 19 C -0.024 4.024 20 C -0.139 4.139 21 C 0.111 3.889 22 O -0.500 6.500 23 C -0.149 4.149 24 C -0.081 4.081 25 C -0.074 4.074 26 Br -0.020 7.020 27 H 0.258 0.742 28 H -0.007 1.007 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.148 0.852 36 H 0.035 0.965 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.389 0.611 40 H 0.130 0.870 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.652 -13.902 1.731 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.145 4.145 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.538 4.538 8 H 0.096 0.904 9 C 0.063 3.937 10 N -0.234 5.234 11 C -0.030 4.030 12 C 0.018 3.982 13 C -0.174 4.174 14 C -0.103 4.103 15 C -0.204 4.204 16 C -0.064 4.064 17 N -0.175 5.175 18 C -0.035 4.035 19 C -0.026 4.026 20 C -0.159 4.159 21 C 0.066 3.934 22 O -0.310 6.310 23 C -0.168 4.168 24 C -0.101 4.101 25 C -0.154 4.154 26 Br 0.066 6.934 27 H 0.068 0.932 28 H 0.011 0.989 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.165 0.835 36 H 0.053 0.947 37 H 0.125 0.875 38 H 0.149 0.851 39 H 0.245 0.755 40 H 0.148 0.852 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.005 -12.993 1.587 15.344 hybrid contribution -1.462 0.517 0.095 1.554 sum 6.543 -12.476 1.682 14.188 Atomic orbital electron populations 1.69960 1.05953 1.26360 1.51907 1.24937 0.94739 0.99005 0.95850 0.86597 0.80345 0.84070 0.77449 1.19640 1.21156 1.21214 1.21398 0.94460 0.89342 1.48592 0.90421 1.19898 0.89873 0.87351 0.96532 1.62099 1.34251 1.02224 1.24784 1.20953 0.97597 0.95136 0.89351 1.21038 0.88974 0.92719 0.95487 1.22017 0.98017 1.00256 0.97156 1.21479 0.99632 0.96246 0.92990 1.22010 0.95351 1.02841 1.00245 1.22632 0.94807 0.96223 0.92752 1.67461 1.35177 1.13739 1.01080 1.21132 0.92803 0.98378 0.91210 1.19883 0.94350 0.94361 0.94029 1.21328 0.99143 0.93472 1.01981 1.18439 0.93037 0.86037 0.95893 1.84811 1.87846 1.18377 1.40011 1.21271 0.97872 0.97377 1.00295 1.20972 0.98208 0.92378 0.98540 1.21837 0.96192 0.94543 1.02859 1.96817 1.96894 1.17130 1.82530 0.93238 0.98879 0.94506 0.90360 0.94443 0.85041 0.85372 0.85561 0.83483 0.94698 0.87493 0.85132 0.75521 0.85233 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.50 -13.39 8.41 -34.44 -0.29 -13.68 16 8 H 0.08 2.04 6.13 -52.49 -0.32 1.72 16 9 C 0.19 4.60 4.58 -4.97 -0.02 4.58 16 10 N -0.51 -10.37 4.29 -238.96 -1.03 -11.40 16 11 C 0.10 1.75 5.14 -4.98 -0.03 1.73 16 12 C 0.16 2.85 5.69 -82.58 -0.47 2.38 16 13 C -0.15 -2.63 8.03 -39.44 -0.32 -2.95 16 14 C -0.08 -1.15 10.18 -39.28 -0.40 -1.55 16 15 C -0.18 -2.55 10.11 -39.44 -0.40 -2.95 16 16 C 0.09 1.41 11.18 -17.55 -0.20 1.22 16 17 N -0.47 -8.43 10.27 -9.47 -0.10 -8.52 16 18 C 0.09 1.72 4.21 -4.98 -0.02 1.70 16 19 C -0.02 -0.38 4.46 -104.62 -0.47 -0.85 16 20 C -0.14 -1.95 8.63 -39.44 -0.34 -2.29 16 21 C 0.11 1.41 6.70 -39.22 -0.26 1.15 16 22 O -0.50 -5.44 13.50 -19.47 -0.26 -5.70 16 23 C -0.15 -1.81 9.99 -39.44 -0.39 -2.21 16 24 C -0.08 -1.09 9.78 -39.58 -0.39 -1.48 16 25 C -0.07 -1.19 6.22 -39.50 -0.25 -1.44 16 26 Br -0.02 -0.36 30.54 -68.01 -2.08 -2.44 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H -0.01 -0.17 8.06 -51.93 -0.42 -0.59 16 29 H 0.04 0.96 5.57 -51.93 -0.29 0.67 16 30 H 0.08 1.32 6.24 -51.93 -0.32 1.00 16 31 H 0.04 0.63 8.02 -51.93 -0.42 0.21 16 32 H 0.13 2.20 8.01 -52.49 -0.42 1.77 16 33 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.15 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.03 0.62 7.95 -51.93 -0.41 0.20 16 37 H 0.11 2.21 6.30 -51.93 -0.33 1.88 16 38 H 0.13 1.67 8.01 -52.49 -0.42 1.25 16 39 H 0.39 2.40 9.06 45.56 0.41 2.82 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -31.85 363.51 -10.79 -42.65 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.19 Total: 3.85 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -4.34 Total: -15.22 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.39 Total: -45.28 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.26 Total: -5.70 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -2.08 Total: -2.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.85 -10.79 -42.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.035 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds