Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99922 * 2 1 4 4 H 1.48500 * 109.46901 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47517 * 300.00386 * 3 2 1 6 6 H 1.48503 * 109.47096 * 60.01095 * 3 2 1 7 7 C 1.37875 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99819 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47026 * 177.25467 * 9 7 2 11 11 C 1.46896 * 111.00389 * 164.66037 * 10 9 7 12 12 C 1.50704 * 109.47226 * 293.95483 * 11 10 9 13 13 C 1.38225 * 119.62015 * 94.99086 * 12 11 10 14 14 C 1.38632 * 119.16054 * 180.02562 * 13 12 11 15 15 C 1.38673 * 118.42014 * 0.02562 * 14 13 12 16 16 C 1.38183 * 119.16357 * 0.27349 * 15 14 13 17 17 N 1.31861 * 119.61447 * 275.02254 * 12 11 10 18 18 C 1.46901 * 110.99846 * 288.61107 * 10 9 7 19 19 C 1.50701 * 109.47412 * 170.83764 * 18 10 9 20 20 C 1.38158 * 119.97770 * 103.22238 * 19 18 10 21 21 C 1.38713 * 119.95084 * 179.75411 * 20 19 18 22 22 O 1.35915 * 120.04439 * 180.23133 * 21 20 19 23 23 C 1.38741 * 119.90776 * 0.54014 * 21 20 19 24 24 C 1.38120 * 119.95728 * 359.71036 * 23 21 20 25 25 C 1.38325 * 119.97465 * 283.49574 * 19 18 10 26 26 Br 1.89104 * 119.95528 * 359.97438 * 25 19 18 27 27 H 0.97004 * 119.99689 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47659 * 57.25554 * 9 7 2 29 29 H 1.09000 * 109.47330 * 297.24740 * 9 7 2 30 30 H 1.08997 * 109.47746 * 173.95172 * 11 10 9 31 31 H 1.09001 * 109.47297 * 53.94942 * 11 10 9 32 32 H 1.08000 * 120.41874 * 0.05190 * 13 12 11 33 33 H 1.07998 * 120.78703 * 180.02562 * 14 13 12 34 34 H 1.07994 * 120.41853 * 180.02562 * 15 14 13 35 35 H 1.07995 * 119.62159 * 179.70019 * 16 15 14 36 36 H 1.09005 * 109.47310 * 290.83490 * 18 10 9 37 37 H 1.09001 * 109.47368 * 50.83482 * 18 10 9 38 38 H 1.08000 * 120.02609 * 359.97438 * 20 19 18 39 39 H 0.96704 * 113.99640 * 270.31401 * 22 21 20 40 40 H 1.08001 * 120.02123 * 179.68558 * 23 21 20 41 41 H 1.07998 * 119.97964 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2123 6 1 1.8905 2.3963 1.2127 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2041 -3.6149 -0.0675 11 6 1.5561 -4.8832 0.2922 12 6 1.1493 -4.8458 1.7428 13 6 -0.1370 -4.4704 2.0821 14 6 -0.5009 -4.4388 3.4194 15 6 0.4471 -4.7871 4.3698 16 6 1.7155 -5.1460 3.9555 17 7 2.0247 -5.1711 2.6737 18 6 2.8238 -3.6988 -1.3967 19 6 3.9494 -4.7003 -1.3640 20 6 3.7706 -5.9579 -1.9075 21 6 4.8087 -6.8775 -1.8817 22 8 4.6363 -8.1136 -2.4200 23 6 6.0210 -6.5361 -1.2998 24 6 6.1939 -5.2796 -0.7529 25 6 5.1590 -4.3618 -0.7847 26 35 5.3987 -2.6422 -0.0353 27 1 -0.4850 0.8401 0.0004 28 1 0.5875 -2.5357 -0.8646 29 1 0.6621 -2.5787 0.9133 30 1 2.2530 -5.7058 0.1314 31 1 0.6726 -5.0289 -0.3293 32 1 -0.8496 -4.2054 1.3151 33 1 -1.4989 -4.1498 3.7141 34 1 0.1982 -4.7741 5.4206 35 1 2.4609 -5.4139 4.6896 36 1 2.0778 -4.0145 -2.1262 37 1 3.2155 -2.7211 -1.6775 38 1 2.8244 -6.2234 -2.3554 39 1 4.2966 -8.7702 -1.7966 40 1 6.8288 -7.2525 -1.2741 41 1 7.1374 -5.0136 -0.2994 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = 12.531882 kcal Electronic energy + Delta-G solvation = -25943.859731 eV Core-core repulsion = 22255.544670 eV Total energy + Delta-G solvation = -3688.315062 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 376.053 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.19527 -40.75157 -38.61393 -37.32741 -34.68640 -33.42528 -33.14279 -32.50816 -31.99539 -29.57698 -29.12313 -27.65843 -25.78561 -24.37906 -23.65309 -23.35283 -22.58061 -21.43987 -18.97026 -18.46266 -17.69429 -17.28092 -17.12440 -16.91253 -16.64396 -16.41260 -16.25568 -15.93250 -15.28625 -15.13462 -14.74591 -14.36343 -14.10635 -14.02294 -13.84654 -13.64941 -13.39445 -13.12120 -13.04269 -12.82713 -12.64198 -12.55488 -12.35816 -12.33419 -11.89330 -11.48734 -11.42262 -11.23316 -10.69739 -10.60024 -10.50904 -10.23904 -9.94772 -9.76909 -9.35054 -8.92002 -8.11863 -6.15291 0.06602 0.22797 0.32160 0.48867 0.95114 1.36498 1.39134 1.50244 2.41595 2.48450 2.89860 3.21446 3.24102 3.48012 3.54920 3.78186 3.82469 3.96698 4.08388 4.19963 4.24536 4.33704 4.39256 4.46762 4.56170 4.58902 4.64576 4.83603 4.85011 4.93908 4.99336 5.10126 5.22375 5.29744 5.32444 5.35042 5.36750 5.45953 5.70866 5.82834 5.89535 6.17189 6.35652 6.66089 6.84160 7.03649 7.21659 7.51876 8.99290 Molecular weight = 376.05amu Principal moments of inertia in cm(-1) A = 0.007346 B = 0.005323 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3810.488806 B = 5258.798694 C = 7409.155518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.506 4.506 8 H 0.081 0.919 9 C 0.206 3.794 10 N -0.511 5.511 11 C 0.104 3.896 12 C 0.132 3.868 13 C -0.175 4.175 14 C -0.083 4.083 15 C -0.173 4.173 16 C 0.083 3.917 17 N -0.491 5.491 18 C 0.097 3.903 19 C -0.038 4.038 20 C -0.144 4.144 21 C 0.123 3.877 22 O -0.502 6.502 23 C -0.138 4.138 24 C -0.078 4.078 25 C -0.091 4.091 26 Br -0.050 7.050 27 H 0.258 0.742 28 H -0.035 1.035 29 H 0.019 0.981 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.122 0.878 33 H 0.153 0.847 34 H 0.166 0.834 35 H 0.178 0.822 36 H 0.037 0.963 37 H 0.081 0.919 38 H 0.139 0.861 39 H 0.413 0.587 40 H 0.162 0.838 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.037 -15.750 2.774 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.191 4.191 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.099 0.901 9 C 0.081 3.919 10 N -0.235 5.235 11 C -0.025 4.025 12 C -0.006 4.006 13 C -0.195 4.195 14 C -0.108 4.108 15 C -0.193 4.193 16 C -0.074 4.074 17 N -0.201 5.201 18 C -0.031 4.031 19 C -0.041 4.041 20 C -0.164 4.164 21 C 0.078 3.922 22 O -0.316 6.316 23 C -0.158 4.158 24 C -0.098 4.098 25 C -0.171 4.171 26 Br 0.036 6.964 27 H 0.067 0.933 28 H -0.018 1.018 29 H 0.037 0.963 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.140 0.860 33 H 0.171 0.829 34 H 0.184 0.816 35 H 0.195 0.805 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.157 0.843 39 H 0.272 0.728 40 H 0.180 0.820 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.399 -14.876 2.627 17.791 hybrid contribution -1.882 0.897 -0.208 2.095 sum 7.517 -13.979 2.419 16.055 Atomic orbital electron populations 1.70073 1.07220 1.27010 1.53270 1.25658 0.95464 1.02077 0.95930 0.85720 0.79333 0.80529 0.77501 1.19197 1.20612 1.20959 1.21785 0.94869 0.90442 1.47356 0.90102 1.19499 0.89743 0.88425 0.94268 1.61968 1.33176 1.02330 1.25993 1.20929 0.97706 0.93950 0.89891 1.21041 0.89632 0.94344 0.95569 1.22088 0.97785 1.01298 0.98377 1.21865 1.01220 0.95541 0.92218 1.22432 0.94295 1.00583 1.01968 1.23245 0.96300 0.95599 0.92302 1.67434 1.35608 1.14693 1.02328 1.20986 0.93651 0.98121 0.90297 1.19620 0.93616 0.94775 0.96081 1.21402 1.00205 0.92846 1.01897 1.18450 0.92657 0.86527 0.94614 1.84761 1.87961 1.17970 1.40915 1.21594 0.98394 0.97136 0.98627 1.21202 0.98129 0.92260 0.98226 1.21876 0.97202 0.93897 1.04125 1.96767 1.96884 1.19707 1.83059 0.93262 1.01779 0.96315 0.89330 0.94198 0.85996 0.82890 0.81619 0.80497 0.94534 0.90106 0.84337 0.72766 0.82041 0.83142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.94 45.22 29.54 68.60 2.03 47.25 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.51 -28.02 8.41 25.60 0.22 -27.81 16 8 H 0.08 4.36 6.13 -2.91 -0.02 4.35 16 9 C 0.21 10.59 4.58 85.56 0.39 10.98 16 10 N -0.51 -21.57 4.29 -909.93 -3.91 -25.47 16 11 C 0.10 3.80 5.14 85.56 0.44 4.24 16 12 C 0.13 4.89 5.69 42.55 0.24 5.13 16 13 C -0.17 -6.11 8.03 22.36 0.18 -5.93 16 14 C -0.08 -2.37 10.18 22.47 0.23 -2.14 16 15 C -0.17 -4.35 10.11 22.36 0.23 -4.12 16 16 C 0.08 2.36 11.18 84.67 0.95 3.30 16 17 N -0.49 -17.53 10.27 -183.88 -1.89 -19.42 16 18 C 0.10 3.75 4.21 85.56 0.36 4.11 16 19 C -0.04 -1.24 4.46 -19.86 -0.09 -1.33 16 20 C -0.14 -3.84 8.63 22.36 0.19 -3.65 16 21 C 0.12 2.77 6.70 22.50 0.15 2.92 16 22 O -0.50 -9.12 13.50 -92.59 -1.25 -10.37 16 23 C -0.14 -2.90 9.99 22.36 0.22 -2.67 16 24 C -0.08 -1.94 9.78 22.27 0.22 -1.72 16 25 C -0.09 -2.88 6.22 22.32 0.14 -2.74 16 26 Br -0.05 -1.83 30.54 -20.37 -0.62 -2.45 16 27 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 28 H -0.04 -1.98 8.06 -2.39 -0.02 -2.00 16 29 H 0.02 1.03 5.57 -2.39 -0.01 1.02 16 30 H 0.09 3.01 6.24 -2.39 -0.01 3.00 16 31 H 0.04 1.41 8.02 -2.39 -0.02 1.39 16 32 H 0.12 4.33 8.01 -2.91 -0.02 4.31 16 33 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 35 H 0.18 3.79 8.06 -2.91 -0.02 3.76 16 36 H 0.04 1.35 7.95 -2.38 -0.02 1.34 16 37 H 0.08 3.51 6.30 -2.39 -0.02 3.50 16 38 H 0.14 3.39 8.01 -2.91 -0.02 3.37 16 39 H 0.41 3.51 9.06 -74.05 -0.67 2.84 16 40 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 41 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -70.50 363.51 -0.43 -70.93 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.40 Total: 15.48 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 4.53 Total: -20.63 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -5.51 Total: -100.21 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -1.25 Total: -10.37 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 35 Polarization: -1.83 SS G_CDS: -0.62 Total: -2.45 kcal Total: -70.50 -0.43 -70.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.460 kcal (2) G-P(sol) polarization free energy of solvation -70.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds