Wall clock time and date at job start Tue Mar 31 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37107 * 123.25523 * 2 1 4 4 C 1.35824 * 114.74033 * 180.02562 * 3 2 1 5 5 N 1.38942 * 124.62634 * 179.97438 * 4 3 2 6 6 C 1.34769 * 120.00011 * 179.97438 * 5 4 3 7 7 O 1.21285 * 120.00301 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00074 * 179.97438 * 6 5 4 9 9 C 1.53000 * 117.50317 * 248.62457 * 8 6 5 10 10 C 1.52995 * 60.00056 * 252.51074 * 9 8 6 11 11 S 1.70616 * 110.74795 * 359.97438 * 4 3 2 12 12 C 1.36806 * 123.25361 * 179.71159 * 2 1 3 13 13 C 1.46151 * 125.32505 * 359.97438 * 12 2 1 14 14 O 1.21763 * 119.99301 * 351.27794 * 13 12 2 15 15 N 1.34775 * 120.00339 * 171.26935 * 13 12 2 16 16 C 1.46503 * 119.99839 * 2.07438 * 15 13 12 17 17 C 1.50697 * 109.46838 * 82.07666 * 16 15 13 18 18 H 1.08002 * 120.00699 * 359.97438 * 17 16 15 19 19 C 1.37889 * 119.99734 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99865 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 119.99701 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46998 * 90.00093 * 21 19 17 23 23 H 1.48504 * 109.47077 * 209.99701 * 21 19 17 24 24 H 1.48495 * 109.47390 * 330.00120 * 21 19 17 25 25 C 1.46492 * 119.99883 * 182.07452 * 15 13 12 26 26 C 1.52992 * 109.47430 * 90.00120 * 25 15 13 27 27 C 1.53786 * 113.61759 * 274.13628 * 26 25 15 28 28 C 1.53956 * 87.02258 * 220.04782 * 27 26 25 29 29 C 1.53784 * 87.11248 * 25.36113 * 28 27 26 30 30 H 1.08995 * 109.47158 * 90.02085 * 1 2 3 31 31 H 1.09005 * 109.46750 * 330.01980 * 1 2 3 32 32 H 1.09000 * 109.46450 * 210.02631 * 1 2 3 33 33 H 1.07998 * 122.63289 * 0.02562 * 3 2 1 34 34 H 0.97005 * 119.99747 * 0.02562 * 5 4 3 35 35 H 1.09000 * 115.54551 * 34.33744 * 8 6 5 36 36 H 1.09000 * 117.49785 * 0.02562 * 9 8 6 37 37 H 1.09003 * 117.50016 * 145.01573 * 9 8 6 38 38 H 1.09000 * 117.50088 * 252.50868 * 10 9 8 39 39 H 1.09002 * 117.51862 * 107.47832 * 10 9 8 40 40 H 1.09002 * 109.46793 * 202.07051 * 16 15 13 41 41 H 1.08997 * 109.47146 * 322.07082 * 16 15 13 42 42 H 0.97000 * 119.99796 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.47196 * 210.00240 * 25 15 13 44 44 H 1.09002 * 109.47051 * 329.99696 * 25 15 13 45 45 H 1.08997 * 112.85003 * 45.33224 * 26 25 15 46 46 H 1.08998 * 113.60854 * 334.56491 * 27 26 25 47 47 H 1.08993 * 113.61517 * 105.46658 * 27 26 25 48 48 H 1.09003 * 113.53426 * 270.81299 * 28 27 26 49 49 H 1.08996 * 113.66659 * 139.92646 * 28 27 26 50 50 H 1.08993 * 113.61837 * 220.09411 * 29 28 27 51 51 H 1.08996 * 113.69062 * 89.19659 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2589 1.1465 0.0000 4 6 3.6022 0.9454 -0.0006 5 7 4.5523 1.9592 -0.0012 6 6 5.8647 1.6528 -0.0012 7 8 6.2165 0.4921 -0.0011 8 6 6.8952 2.7525 -0.0024 9 6 7.7390 2.9286 -1.2665 10 6 8.3685 2.3400 -0.0024 11 16 3.9637 -0.7220 -0.0004 12 6 2.2572 -1.1440 0.0058 13 6 1.7235 -2.5046 0.0131 14 8 0.5308 -2.6896 0.1745 15 7 2.5512 -3.5542 -0.1588 16 6 3.9919 -3.3342 -0.3076 17 6 4.6179 -3.1681 1.0531 18 1 4.0039 -3.2207 1.9401 19 6 5.9746 -2.9490 1.1658 20 7 6.5207 -2.8036 2.3532 21 14 7.0365 -2.8587 -0.3683 22 1 7.1006 -1.4534 -0.8439 23 1 8.4063 -3.3368 -0.0509 24 1 6.4471 -3.7141 -1.4294 25 6 2.0102 -4.9150 -0.1968 26 6 1.6582 -5.2838 -1.6393 27 6 0.2517 -4.8307 -2.0654 28 6 0.1279 -6.1778 -2.8006 29 6 1.1586 -6.7293 -1.8014 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 0.8902 0.5136 32 1 -0.3632 -0.8898 0.5143 33 1 1.8177 2.1323 0.0004 34 1 4.2709 2.8876 -0.0009 35 1 6.6242 3.6512 0.5515 36 1 7.5485 2.2494 -2.0975 37 1 8.0231 3.9435 -1.5446 38 1 9.0669 2.9676 0.5512 39 1 8.5924 1.2732 -0.0011 40 1 4.4400 -4.1906 -0.8116 41 1 4.1629 -2.4344 -0.8986 42 1 7.4752 -2.6498 2.4325 43 1 2.7552 -5.6131 0.1852 44 1 1.1135 -4.9669 0.4207 45 1 2.4388 -5.0096 -2.3489 46 1 -0.4430 -4.7225 -1.2325 47 1 0.2540 -3.9676 -2.7309 48 1 0.4893 -6.1474 -3.8285 49 1 -0.8566 -6.6367 -2.7102 50 1 1.8920 -7.3965 -2.2540 51 1 0.7136 -7.1414 -0.8958 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095401666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:58 Heat of formation + Delta-G solvation = 13.024254 kcal Electronic energy + Delta-G solvation = -33590.419117 eV Core-core repulsion = 29390.262988 eV Total energy + Delta-G solvation = -4200.156130 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.14580 -39.47214 -38.17036 -37.26347 -36.17696 -34.95358 -34.35480 -32.59862 -29.73765 -29.06888 -27.87438 -26.46761 -25.29864 -25.03512 -22.79662 -22.68542 -22.55809 -21.94738 -20.81321 -19.42157 -19.04352 -18.13986 -17.59479 -17.13517 -16.76786 -16.25244 -15.47858 -15.38323 -14.96807 -14.87100 -14.61934 -14.50399 -14.32619 -14.09458 -13.61231 -13.25232 -12.84399 -12.78451 -12.68290 -12.59879 -12.49350 -12.28512 -12.15245 -11.85197 -11.75700 -11.66861 -11.57731 -11.21204 -11.14877 -10.83126 -10.77204 -10.69011 -10.60760 -10.39580 -10.27719 -10.07263 -10.03565 -9.95083 -9.85227 -9.63190 -9.04567 -8.84166 -8.74979 -7.78373 -7.46737 -7.14103 -6.27949 -4.24712 1.35727 2.39531 2.45241 2.95559 3.15480 3.21802 3.28682 3.31578 3.44805 3.75858 3.90058 4.11917 4.30426 4.57464 4.67958 4.73588 4.89619 4.97568 5.00435 5.03199 5.06936 5.15822 5.42087 5.55804 5.59205 5.67872 5.76882 5.80549 5.83972 5.91496 5.97335 6.02257 6.04645 6.05048 6.08742 6.16074 6.22542 6.28009 6.32139 6.37583 6.39472 6.41348 6.54318 6.58750 6.70314 6.81568 7.08118 7.22257 7.27683 7.39597 7.44110 8.13934 8.20547 8.36969 8.76797 9.07000 9.28346 10.82271 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.010284 B = 0.003831 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.066120 B = 7306.750893 C = 8974.903886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.022 4.022 3 C -0.220 4.220 4 C -0.076 4.076 5 N -0.624 5.624 6 C 0.517 3.483 7 O -0.483 6.483 8 C -0.188 4.188 9 C -0.154 4.154 10 C -0.145 4.145 11 S 0.468 5.532 12 C -0.349 4.349 13 C 0.601 3.399 14 O -0.561 6.561 15 N -0.593 5.593 16 C 0.202 3.798 17 C -0.539 4.539 18 H 0.086 0.914 19 C 0.101 3.899 20 N -0.868 5.868 21 Si 0.836 3.164 22 H -0.228 1.228 23 H -0.282 1.282 24 H -0.267 1.267 25 C 0.133 3.867 26 C -0.127 4.127 27 C -0.124 4.124 28 C -0.145 4.145 29 C -0.132 4.132 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.406 0.594 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.047 0.953 41 H 0.028 0.972 42 H 0.269 0.731 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.058 0.942 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.063 0.937 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.894 7.920 -8.579 11.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.038 4.038 3 C -0.253 4.253 4 C -0.291 4.291 5 N -0.266 5.266 6 C 0.303 3.697 7 O -0.357 6.357 8 C -0.209 4.209 9 C -0.191 4.191 10 C -0.182 4.182 11 S 0.744 5.256 12 C -0.471 4.471 13 C 0.391 3.609 14 O -0.443 6.443 15 N -0.322 5.322 16 C 0.078 3.922 17 C -0.582 4.582 18 H 0.104 0.896 19 C -0.108 4.108 20 N -0.503 5.503 21 Si 0.661 3.339 22 H -0.152 1.152 23 H -0.208 1.208 24 H -0.192 1.192 25 C 0.009 3.991 26 C -0.146 4.146 27 C -0.162 4.162 28 C -0.183 4.183 29 C -0.170 4.170 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.138 0.862 34 H 0.241 0.759 35 H 0.143 0.857 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.637 6.340 -8.405 10.548 hybrid contribution -0.683 1.784 -0.443 1.961 sum -1.320 8.125 -8.848 12.085 Atomic orbital electron populations 1.20620 0.90306 1.03064 1.01677 1.18664 0.96334 0.90199 0.98565 1.19400 0.90269 0.98976 1.16675 1.24190 0.93140 1.02852 1.08899 1.42554 1.04416 1.08483 1.71195 1.20089 0.82300 0.90310 0.77038 1.90840 1.78800 1.19617 1.46476 1.22029 0.92986 1.00006 1.05920 1.22967 1.01697 1.02930 0.91513 1.22999 0.91927 1.03471 0.99809 1.86799 0.96434 0.84099 1.58274 1.24812 1.01839 0.96864 1.23550 1.16793 0.85273 0.83199 0.75593 1.90617 1.15333 1.85642 1.52744 1.47684 1.08112 1.05523 1.70900 1.19989 0.77605 0.96254 0.98387 1.21385 0.93964 1.50812 0.92051 0.89600 1.24742 0.97280 0.92842 0.95915 1.69856 1.12407 1.45287 1.22721 0.87376 0.80615 0.81835 0.84085 1.15194 1.20818 1.19171 1.21330 0.99627 0.83032 0.95069 1.22982 0.97488 0.96010 0.98144 1.22911 0.97096 0.96043 1.00128 1.22866 0.99063 0.98020 0.98306 1.22854 0.98541 0.96085 0.99513 0.92223 0.93063 0.88910 0.86203 0.75861 0.85714 0.88150 0.87754 0.87764 0.87019 0.93516 0.95582 0.92042 0.90411 0.90286 0.89545 0.89408 0.92335 0.90820 0.91935 0.91793 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.66 36.01 0.35 -1.34 16 2 C -0.02 -0.44 5.89 -105.55 -0.62 -1.06 16 3 C -0.22 -3.92 10.03 -40.86 -0.41 -4.33 16 4 C -0.08 -1.42 7.00 -15.19 -0.11 -1.52 16 5 N -0.62 -9.45 5.40 -11.81 -0.06 -9.51 16 6 C 0.52 8.33 7.57 -10.99 -0.08 8.25 16 7 O -0.48 -9.98 11.73 5.55 0.07 -9.91 16 8 C -0.19 -2.14 6.19 -91.77 -0.57 -2.71 16 9 C -0.15 -1.48 10.23 -26.73 -0.27 -1.76 16 10 C -0.14 -1.62 10.04 -26.73 -0.27 -1.89 16 11 S 0.47 10.31 12.07 -107.50 -1.30 9.01 16 12 C -0.35 -7.67 6.21 -36.93 -0.23 -7.90 16 13 C 0.60 13.49 7.53 -13.09 -0.10 13.39 16 14 O -0.56 -12.73 13.01 5.13 0.07 -12.66 16 15 N -0.59 -12.74 2.48 -176.80 -0.44 -13.17 16 16 C 0.20 4.62 3.82 -5.19 -0.02 4.60 16 17 C -0.54 -14.13 7.46 -34.44 -0.26 -14.39 16 18 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 19 C 0.10 2.69 5.06 -17.82 -0.09 2.59 16 20 N -0.87 -24.80 13.96 55.43 0.77 -24.03 16 21 Si 0.84 19.63 26.51 -169.99 -4.51 15.12 16 22 H -0.23 -5.26 5.40 56.52 0.31 -4.95 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 25 C 0.13 2.43 5.21 -4.05 -0.02 2.41 16 26 C -0.13 -1.97 3.96 -89.80 -0.36 -2.33 16 27 C -0.12 -1.88 7.13 -25.82 -0.18 -2.06 16 28 C -0.15 -1.78 8.09 -25.83 -0.21 -1.99 16 29 C -0.13 -1.68 7.65 -25.91 -0.20 -1.88 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.78 5.80 -51.93 -0.30 1.48 16 33 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.41 4.45 8.80 -40.82 -0.36 4.09 16 35 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.11 1.55 7.67 -51.93 -0.40 1.16 16 40 H 0.05 1.04 7.07 -51.93 -0.37 0.67 16 41 H 0.03 0.63 3.98 -22.42 -0.09 0.54 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 44 H 0.08 1.47 7.12 -51.93 -0.37 1.10 16 45 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.09 1.43 7.69 -51.93 -0.40 1.03 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 411.21 15.07 6.20 6.20 Total: -1.00 -31.53 411.21 -10.73 -42.26 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -7.88 Total: 10.61 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -3.65 Total: -13.91 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.27 Total: -46.72 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.13 Total: -22.58 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.51 Total: 15.12 kcal Atomic # 16 Polarization: 10.31 SS G_CDS: -1.30 Total: 9.01 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.53 -10.73 -42.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095401666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.286 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds