Wall clock time and date at job start Tue Mar 31 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37107 * 123.25523 * 2 1 4 4 C 1.35824 * 114.74033 * 180.02562 * 3 2 1 5 5 N 1.38942 * 124.62634 * 179.97438 * 4 3 2 6 6 C 1.34769 * 120.00011 * 179.97438 * 5 4 3 7 7 O 1.21285 * 120.00301 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00074 * 179.97438 * 6 5 4 9 9 C 1.53000 * 117.50317 * 248.62457 * 8 6 5 10 10 C 1.52995 * 60.00056 * 252.51074 * 9 8 6 11 11 S 1.70616 * 110.74795 * 359.97438 * 4 3 2 12 12 C 1.36806 * 123.25361 * 179.71159 * 2 1 3 13 13 C 1.46151 * 125.32505 * 359.97438 * 12 2 1 14 14 O 1.21763 * 119.99301 * 351.27794 * 13 12 2 15 15 N 1.34775 * 120.00339 * 171.26935 * 13 12 2 16 16 C 1.46503 * 119.99839 * 2.07438 * 15 13 12 17 17 C 1.50697 * 109.46838 * 82.07666 * 16 15 13 18 18 H 1.08002 * 120.00699 * 359.97438 * 17 16 15 19 19 C 1.37889 * 119.99734 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99865 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 119.99701 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46998 * 90.00093 * 21 19 17 23 23 H 1.48504 * 109.47077 * 209.99701 * 21 19 17 24 24 H 1.48495 * 109.47390 * 330.00120 * 21 19 17 25 25 C 1.46492 * 119.99883 * 182.07452 * 15 13 12 26 26 C 1.52992 * 109.47430 * 90.00120 * 25 15 13 27 27 C 1.53786 * 113.61759 * 274.13628 * 26 25 15 28 28 C 1.53956 * 87.02258 * 220.04782 * 27 26 25 29 29 C 1.53784 * 87.11248 * 25.36113 * 28 27 26 30 30 H 1.08995 * 109.47158 * 90.02085 * 1 2 3 31 31 H 1.09005 * 109.46750 * 330.01980 * 1 2 3 32 32 H 1.09000 * 109.46450 * 210.02631 * 1 2 3 33 33 H 1.07998 * 122.63289 * 0.02562 * 3 2 1 34 34 H 0.97005 * 119.99747 * 0.02562 * 5 4 3 35 35 H 1.09000 * 115.54551 * 34.33744 * 8 6 5 36 36 H 1.09000 * 117.49785 * 0.02562 * 9 8 6 37 37 H 1.09003 * 117.50016 * 145.01573 * 9 8 6 38 38 H 1.09000 * 117.50088 * 252.50868 * 10 9 8 39 39 H 1.09002 * 117.51862 * 107.47832 * 10 9 8 40 40 H 1.09002 * 109.46793 * 202.07051 * 16 15 13 41 41 H 1.08997 * 109.47146 * 322.07082 * 16 15 13 42 42 H 0.97000 * 119.99796 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.47196 * 210.00240 * 25 15 13 44 44 H 1.09002 * 109.47051 * 329.99696 * 25 15 13 45 45 H 1.08997 * 112.85003 * 45.33224 * 26 25 15 46 46 H 1.08998 * 113.60854 * 334.56491 * 27 26 25 47 47 H 1.08993 * 113.61517 * 105.46658 * 27 26 25 48 48 H 1.09003 * 113.53426 * 270.81299 * 28 27 26 49 49 H 1.08996 * 113.66659 * 139.92646 * 28 27 26 50 50 H 1.08993 * 113.61837 * 220.09411 * 29 28 27 51 51 H 1.08996 * 113.69062 * 89.19659 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2589 1.1465 0.0000 4 6 3.6022 0.9454 -0.0006 5 7 4.5523 1.9592 -0.0012 6 6 5.8647 1.6528 -0.0012 7 8 6.2165 0.4921 -0.0011 8 6 6.8952 2.7525 -0.0024 9 6 7.7390 2.9286 -1.2665 10 6 8.3685 2.3400 -0.0024 11 16 3.9637 -0.7220 -0.0004 12 6 2.2572 -1.1440 0.0058 13 6 1.7235 -2.5046 0.0131 14 8 0.5308 -2.6896 0.1745 15 7 2.5512 -3.5542 -0.1588 16 6 3.9919 -3.3342 -0.3076 17 6 4.6179 -3.1681 1.0531 18 1 4.0039 -3.2207 1.9401 19 6 5.9746 -2.9490 1.1658 20 7 6.5207 -2.8036 2.3532 21 14 7.0365 -2.8587 -0.3683 22 1 7.1006 -1.4534 -0.8439 23 1 8.4063 -3.3368 -0.0509 24 1 6.4471 -3.7141 -1.4294 25 6 2.0102 -4.9150 -0.1968 26 6 1.6582 -5.2838 -1.6393 27 6 0.2517 -4.8307 -2.0654 28 6 0.1279 -6.1778 -2.8006 29 6 1.1586 -6.7293 -1.8014 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 0.8902 0.5136 32 1 -0.3632 -0.8898 0.5143 33 1 1.8177 2.1323 0.0004 34 1 4.2709 2.8876 -0.0009 35 1 6.6242 3.6512 0.5515 36 1 7.5485 2.2494 -2.0975 37 1 8.0231 3.9435 -1.5446 38 1 9.0669 2.9676 0.5512 39 1 8.5924 1.2732 -0.0011 40 1 4.4400 -4.1906 -0.8116 41 1 4.1629 -2.4344 -0.8986 42 1 7.4752 -2.6498 2.4325 43 1 2.7552 -5.6131 0.1852 44 1 1.1135 -4.9669 0.4207 45 1 2.4388 -5.0096 -2.3489 46 1 -0.4430 -4.7225 -1.2325 47 1 0.2540 -3.9676 -2.7309 48 1 0.4893 -6.1474 -3.8285 49 1 -0.8566 -6.6367 -2.7102 50 1 1.8920 -7.3965 -2.2540 51 1 0.7136 -7.1414 -0.8958 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095401666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:57 Heat of formation + Delta-G solvation = -5.407613 kcal Electronic energy + Delta-G solvation = -33591.218383 eV Core-core repulsion = 29390.262988 eV Total energy + Delta-G solvation = -4200.955395 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.40921 -41.04263 -39.50137 -38.65855 -37.22261 -36.69267 -35.78684 -34.58029 -31.29835 -30.53968 -29.63948 -27.92985 -26.43468 -26.24545 -24.61599 -24.08257 -23.41366 -23.29391 -22.13066 -20.83057 -20.27115 -19.55076 -19.16088 -19.00303 -18.25919 -17.79134 -16.79433 -16.59910 -16.53024 -16.33137 -16.07835 -15.89268 -15.66399 -15.44883 -15.08824 -14.85147 -14.53831 -14.45774 -14.24428 -13.94235 -13.86481 -13.71867 -13.31370 -13.25539 -13.23098 -13.04804 -12.76381 -12.64459 -12.49137 -12.32397 -12.31004 -12.12708 -11.83064 -11.64597 -11.57567 -11.52268 -11.44988 -11.34782 -11.22212 -11.04101 -10.78195 -10.63329 -10.45006 -9.47817 -9.09650 -8.70528 -8.35907 -6.35478 -0.21308 0.79799 1.14335 1.32521 1.39810 1.44815 1.54440 1.76052 1.94948 2.26734 2.33777 2.44402 2.85245 3.03397 3.60788 3.68315 3.79307 3.83478 3.86501 3.92275 3.93375 4.06204 4.17237 4.25870 4.44811 4.47636 4.50037 4.55711 4.63591 4.71191 4.72953 4.79218 4.83615 4.87222 4.87638 4.93346 4.94190 4.96664 5.02506 5.04172 5.11161 5.14711 5.19622 5.29068 5.31062 5.38931 5.56014 5.62066 5.75859 5.76315 6.13085 6.24912 6.53671 6.63475 6.99097 7.19583 7.36763 8.78398 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.010284 B = 0.003831 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.066120 B = 7306.750893 C = 8974.903886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.018 4.018 3 C -0.212 4.212 4 C -0.057 4.057 5 N -0.611 5.611 6 C 0.507 3.493 7 O -0.532 6.532 8 C -0.189 4.189 9 C -0.131 4.131 10 C -0.159 4.159 11 S 0.394 5.606 12 C -0.380 4.380 13 C 0.591 3.409 14 O -0.572 6.572 15 N -0.597 5.597 16 C 0.211 3.789 17 C -0.533 4.533 18 H 0.036 0.964 19 C 0.064 3.936 20 N -0.917 5.917 21 Si 0.886 3.114 22 H -0.225 1.225 23 H -0.285 1.285 24 H -0.248 1.248 25 C 0.129 3.871 26 C -0.130 4.130 27 C -0.128 4.128 28 C -0.129 4.129 29 C -0.122 4.122 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.163 0.837 34 H 0.430 0.570 35 H 0.164 0.836 36 H 0.084 0.916 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.035 0.965 42 H 0.269 0.731 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.046 0.954 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 10.536 -10.869 15.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.034 4.034 3 C -0.245 4.245 4 C -0.274 4.274 5 N -0.256 5.256 6 C 0.295 3.705 7 O -0.409 6.409 8 C -0.210 4.210 9 C -0.168 4.168 10 C -0.196 4.196 11 S 0.668 5.332 12 C -0.501 4.501 13 C 0.383 3.617 14 O -0.456 6.456 15 N -0.326 5.326 16 C 0.086 3.914 17 C -0.575 4.575 18 H 0.055 0.945 19 C -0.140 4.140 20 N -0.554 5.554 21 Si 0.708 3.292 22 H -0.148 1.148 23 H -0.210 1.210 24 H -0.172 1.172 25 C 0.006 3.994 26 C -0.150 4.150 27 C -0.165 4.165 28 C -0.166 4.166 29 C -0.160 4.160 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.180 0.820 34 H 0.270 0.730 35 H 0.182 0.818 36 H 0.103 0.897 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.105 0.895 49 H 0.097 0.903 50 H 0.098 0.902 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.170 8.948 -10.706 14.001 hybrid contribution -0.644 1.171 0.316 1.373 sum -1.814 10.118 -10.390 14.615 Atomic orbital electron populations 1.20623 0.88476 1.03432 1.02681 1.19203 0.97790 0.90086 0.96357 1.19730 0.89527 1.00196 1.15017 1.23981 0.94247 1.01879 1.07320 1.42595 1.03732 1.08917 1.70326 1.21090 0.83093 0.90884 0.75423 1.90824 1.79495 1.22138 1.48459 1.22155 0.91357 0.99434 1.08060 1.23097 0.99236 1.04431 0.90027 1.23048 0.92517 1.02069 1.01960 1.86856 0.97617 0.87432 1.61311 1.24930 1.01807 0.97393 1.26014 1.17035 0.85334 0.83815 0.75522 1.90595 1.15547 1.85976 1.53524 1.47771 1.07522 1.06618 1.70728 1.19796 0.78280 0.96810 0.96504 1.21235 0.93563 1.50764 0.91916 0.94527 1.25300 0.98230 0.92308 0.98132 1.69977 1.12592 1.47963 1.24886 0.86595 0.78808 0.82275 0.81484 1.14801 1.21048 1.17178 1.21508 0.98982 0.81664 0.97202 1.22983 0.97627 0.98623 0.95740 1.22858 0.96384 0.97430 0.99862 1.22811 0.99873 0.95418 0.98495 1.22841 0.98795 0.94268 1.00076 0.90738 0.89882 0.91287 0.81951 0.73002 0.81841 0.89707 0.83794 0.84891 0.90744 0.92667 0.94870 0.92207 0.90532 0.91201 0.89958 0.91057 0.93540 0.89469 0.90278 0.90168 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.06 9.66 71.24 0.69 -2.37 16 2 C -0.02 -0.70 5.89 -20.46 -0.12 -0.82 16 3 C -0.21 -7.01 10.03 21.44 0.21 -6.79 16 4 C -0.06 -2.08 7.00 83.00 0.58 -1.50 16 5 N -0.61 -17.11 5.40 -309.67 -1.67 -18.79 16 6 C 0.51 15.74 7.57 87.66 0.66 16.41 16 7 O -0.53 -22.34 11.73 -3.04 -0.04 -22.38 16 8 C -0.19 -3.76 6.19 -11.54 -0.07 -3.84 16 9 C -0.13 -2.11 10.23 30.59 0.31 -1.79 16 10 C -0.16 -3.27 10.04 30.59 0.31 -2.96 16 11 S 0.39 17.83 12.07 -56.49 -0.68 17.15 16 12 C -0.38 -17.08 6.21 23.99 0.15 -16.93 16 13 C 0.59 27.65 7.53 86.30 0.65 28.30 16 14 O -0.57 -26.96 13.01 -4.55 -0.06 -27.02 16 15 N -0.60 -26.87 2.48 -831.47 -2.06 -28.93 16 16 C 0.21 10.04 3.82 85.63 0.33 10.37 16 17 C -0.53 -29.65 7.46 25.60 0.19 -29.46 16 18 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 19 C 0.06 3.58 5.06 84.66 0.43 4.01 16 20 N -0.92 -55.43 13.96 21.45 0.30 -55.13 16 21 Si 0.89 41.99 26.51 68.60 1.82 43.80 16 22 H -0.22 -10.51 5.40 99.48 0.54 -9.97 16 23 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.25 -10.83 6.54 99.48 0.65 -10.17 16 25 C 0.13 4.90 5.21 86.38 0.45 5.36 16 26 C -0.13 -4.06 3.96 -10.26 -0.04 -4.10 16 27 C -0.13 -3.84 7.13 31.18 0.22 -3.62 16 28 C -0.13 -2.90 8.09 31.18 0.25 -2.64 16 29 C -0.12 -2.91 7.65 31.12 0.24 -2.67 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.07 2.62 5.80 -2.39 -0.01 2.61 16 33 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.43 7.75 8.80 -92.70 -0.82 6.93 16 35 H 0.16 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.07 2.12 7.67 -2.39 -0.02 2.11 16 40 H 0.06 2.51 7.07 -2.39 -0.02 2.49 16 41 H 0.03 1.63 3.98 -21.16 -0.08 1.55 16 42 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 43 H 0.08 2.86 8.07 -2.38 -0.02 2.84 16 44 H 0.07 2.75 7.12 -2.39 -0.02 2.73 16 45 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.07 2.37 7.69 -2.39 -0.02 2.35 16 47 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 51 H 0.09 1.98 8.10 -2.39 -0.02 1.96 16 Total: -1.00 -75.56 411.21 2.89 -72.68 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: -0.16 Total: 33.68 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 5.44 Total: -15.07 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -3.44 Total: -102.84 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -0.09 Total: -49.40 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.82 Total: 43.80 kcal Atomic # 16 Polarization: 17.83 SS G_CDS: -0.68 Total: 17.15 kcal Total: -75.56 2.89 -72.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095401666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.268 kcal (2) G-P(sol) polarization free energy of solvation -75.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds