Wall clock time and date at job start Tue Mar 31 2020 06:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38516 * 120.06564 * 359.72424 * 3 2 1 5 5 C 1.38455 * 119.99584 * 179.77075 * 4 3 2 6 6 F 1.35096 * 119.93806 * 180.23492 * 5 4 3 7 7 C 1.38452 * 120.12869 * 0.50487 * 5 4 3 8 8 C 1.38238 * 120.13396 * 359.75258 * 7 5 4 9 9 C 1.38702 * 120.00037 * 359.97438 * 8 7 5 10 10 N 1.40112 * 120.06096 * 179.97438 * 9 8 7 11 11 C 1.46499 * 120.00085 * 0.02562 * 10 9 8 12 12 C 1.50693 * 109.47216 * 180.02562 * 11 10 9 13 13 O 1.21296 * 120.00222 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00498 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00621 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47328 * 89.99292 * 15 14 12 17 17 H 1.07999 * 120.00162 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00163 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00049 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00087 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47228 * 89.99434 * 20 18 16 22 22 H 1.48494 * 109.47432 * 209.99720 * 20 18 16 23 23 H 1.48501 * 109.46800 * 330.00054 * 20 18 16 24 24 C 1.40047 * 119.99595 * 359.97438 * 14 12 11 25 25 C 1.38811 * 120.07532 * 90.00679 * 24 14 12 26 26 C 1.38140 * 119.95646 * 179.97438 * 25 24 14 27 27 C 1.38280 * 120.11156 * 0.02562 * 26 25 24 28 28 C 1.38267 * 120.15664 * 359.97248 * 27 26 25 29 29 C 1.38314 * 120.04490 * 359.75231 * 28 27 26 30 30 F 1.35098 * 120.05685 * 180.27466 * 29 28 27 31 31 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 33 33 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 34 34 H 1.08005 * 120.00166 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.93252 * 179.72598 * 7 5 4 36 36 H 1.07998 * 119.99938 * 179.97438 * 8 7 5 37 37 H 0.97000 * 120.00196 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.47488 * 300.00345 * 11 10 9 39 39 H 1.08997 * 109.47551 * 60.00002 * 11 10 9 40 40 H 1.08998 * 109.47267 * 209.99598 * 15 14 12 41 41 H 1.09004 * 109.46766 * 329.99829 * 15 14 12 42 42 H 0.96999 * 119.99881 * 179.97438 * 19 18 16 43 43 H 1.08000 * 120.02250 * 359.94890 * 25 24 14 44 44 H 1.08005 * 119.94501 * 179.97438 * 26 25 24 45 45 H 1.07996 * 119.92199 * 179.97438 * 27 26 25 46 46 H 1.07998 * 119.97662 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2935 2.3743 -0.0058 5 6 1.9236 3.6072 -0.0010 6 9 1.1880 4.7403 -0.0018 7 6 3.3062 3.6810 -0.0009 8 6 4.0629 2.5242 -0.0006 9 6 3.4374 1.2862 0.0003 10 7 4.2032 0.1129 0.0002 11 6 5.6660 0.1929 -0.0004 12 6 6.2451 -1.1983 -0.0011 13 8 5.5085 -2.1620 -0.0006 14 7 7.5817 -1.3720 -0.0011 15 6 8.1447 -2.7244 -0.0024 16 6 8.3378 -3.1869 -1.4235 17 1 8.0684 -2.5381 -2.2439 18 6 8.8583 -4.4383 -1.6766 19 7 9.0262 -4.8421 -2.9169 20 14 9.3235 -5.5608 -0.2578 21 1 8.1540 -6.3957 0.1170 22 1 10.4473 -6.4397 -0.6699 23 1 9.7390 -4.7394 0.9074 24 6 8.4323 -0.2594 -0.0011 25 6 8.8549 0.2931 1.2002 26 6 9.6944 1.3902 1.1973 27 6 10.1140 1.9395 -0.0003 28 6 9.6959 1.3929 -1.1995 29 6 8.8600 0.2909 -1.2042 30 9 8.4558 -0.2467 -2.3759 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 0.2149 2.3191 -0.0099 35 1 3.7944 4.6444 -0.0017 36 1 5.1412 2.5843 -0.0010 37 1 3.7648 -0.7524 0.0004 38 1 6.0005 0.7257 -0.8905 39 1 6.0011 0.7259 0.8894 40 1 9.1060 -2.7183 0.5115 41 1 7.4627 -3.4023 0.5108 42 1 9.3928 -5.7224 -3.0949 43 1 8.5274 -0.1343 2.1364 44 1 10.0228 1.8201 2.1321 45 1 10.7700 2.7974 0.0011 46 1 10.0258 1.8240 -2.1331 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095414049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:26 Heat of formation + Delta-G solvation = -85.565362 kcal Electronic energy + Delta-G solvation = -34309.557478 eV Core-core repulsion = 29415.452701 eV Total energy + Delta-G solvation = -4894.104777 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.139 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -48.83919 -48.43341 -40.45012 -39.92699 -38.44452 -37.54345 -35.46710 -34.82146 -32.66600 -30.62112 -30.51021 -30.19264 -29.66214 -28.14689 -27.29854 -26.09378 -23.07391 -22.93007 -22.49986 -22.37328 -21.53910 -19.43460 -18.73456 -18.00515 -17.29576 -17.07454 -16.92038 -16.43826 -16.10926 -16.03685 -16.01588 -15.74088 -15.36815 -15.13924 -15.03646 -14.90363 -14.68524 -14.47862 -14.33081 -14.06361 -13.84974 -13.34148 -13.14099 -12.93843 -12.83708 -12.65084 -12.42175 -12.37308 -12.16106 -12.03184 -11.74692 -11.68062 -11.42862 -11.36242 -11.15896 -10.96868 -10.63091 -10.27429 -10.04552 -9.72215 -9.50465 -8.90752 -8.83111 -8.62539 -8.47198 -8.18298 -7.22559 -6.10533 -4.10424 1.10160 1.13201 1.23602 1.26417 2.90797 3.00659 3.14081 3.25870 3.30954 3.33441 3.53052 3.56797 3.68343 4.26458 4.35609 4.42136 4.55632 4.62825 4.82817 4.83582 4.87578 4.92156 4.98026 5.08254 5.20312 5.21837 5.23024 5.28335 5.32436 5.34064 5.40214 5.54836 5.69553 5.92178 5.95706 6.05619 6.12154 6.13775 6.30534 6.34906 6.50125 6.58840 6.74187 6.81916 6.88305 7.08380 7.33168 7.51973 7.77173 7.96630 8.39182 8.59371 8.97614 9.47571 11.02451 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.009498 B = 0.002886 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.132114 B = 9700.598864 C =11694.706760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.311 6.311 3 C 0.083 3.917 4 C -0.197 4.197 5 C 0.066 3.934 6 F -0.146 7.146 7 C -0.132 4.132 8 C -0.148 4.148 9 C 0.199 3.801 10 N -0.723 5.723 11 C 0.107 3.893 12 C 0.514 3.486 13 O -0.518 6.518 14 N -0.550 5.550 15 C 0.219 3.781 16 C -0.534 4.534 17 H 0.085 0.915 18 C 0.076 3.924 19 N -0.893 5.893 20 Si 0.872 3.128 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.266 1.266 24 C 0.104 3.896 25 C -0.093 4.093 26 C -0.130 4.130 27 C -0.091 4.091 28 C -0.155 4.155 29 C 0.120 3.880 30 F -0.115 7.115 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.419 0.581 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.033 0.967 41 H 0.043 0.957 42 H 0.265 0.735 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.428 18.911 9.243 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.225 6.225 3 C 0.034 3.966 4 C -0.217 4.217 5 C 0.044 3.956 6 F -0.125 7.125 7 C -0.152 4.152 8 C -0.172 4.172 9 C 0.094 3.906 10 N -0.357 5.357 11 C -0.021 4.021 12 C 0.301 3.699 13 O -0.393 6.393 14 N -0.279 5.279 15 C 0.100 3.900 16 C -0.572 4.572 17 H 0.103 0.897 18 C -0.127 4.127 19 N -0.531 5.531 20 Si 0.698 3.302 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.191 1.191 24 C 0.011 3.989 25 C -0.112 4.112 26 C -0.149 4.149 27 C -0.109 4.109 28 C -0.174 4.174 29 C 0.099 3.901 30 F -0.093 7.093 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.258 0.742 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.151 0.849 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.534 17.972 9.079 21.499 hybrid contribution -0.117 -0.838 0.240 0.880 sum -7.651 17.134 9.320 20.952 Atomic orbital electron populations 1.23050 0.78229 1.04092 1.01155 1.86088 1.21415 1.25710 1.89266 1.18109 0.90020 0.84625 1.03856 1.20852 1.00534 0.90722 1.09607 1.17071 0.89048 0.81369 1.08089 1.91453 1.77304 1.49209 1.94555 1.20766 0.91555 0.99356 1.03497 1.20343 1.00151 0.89271 1.07411 1.17221 0.87096 0.87749 0.98548 1.44352 1.03479 1.06631 1.81197 1.21087 0.81901 0.96023 1.03096 1.20205 0.82257 0.90556 0.76857 1.90698 1.57904 1.41894 1.48782 1.45414 1.03769 1.06579 1.72180 1.19867 0.93768 0.77087 0.99257 1.21385 1.42865 1.01909 0.91082 0.89660 1.24816 0.95042 0.97376 0.95466 1.69891 1.44897 1.19765 1.18531 0.86928 0.78719 0.81481 0.83034 1.19841 1.20954 1.19118 1.17746 0.98052 0.91106 0.91963 1.21327 0.97107 0.95802 0.96998 1.21029 0.98739 0.96657 0.98434 1.21005 0.98858 0.99580 0.91457 1.21143 0.99672 0.96545 1.00090 1.18165 0.96758 0.93474 0.81734 1.91611 1.88321 1.84835 1.44572 0.88083 0.92687 0.92740 0.84419 0.84743 0.84391 0.74152 0.89603 0.89440 0.94875 0.93866 0.92520 0.84891 0.85198 0.85081 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -3.96 9.74 -19.75 -0.19 -4.15 16 3 C 0.08 1.06 6.70 -39.09 -0.26 0.80 16 4 C -0.20 -2.21 9.01 -39.40 -0.36 -2.57 16 5 C 0.07 0.76 7.30 -39.42 -0.29 0.47 16 6 F -0.15 -1.72 17.26 2.25 0.04 -1.68 16 7 C -0.13 -1.39 10.02 -39.50 -0.40 -1.79 16 8 C -0.15 -1.67 9.31 -39.41 -0.37 -2.04 16 9 C 0.20 2.64 6.67 -83.51 -0.56 2.09 16 10 N -0.72 -10.85 5.71 -59.64 -0.34 -11.19 16 11 C 0.11 1.58 4.21 -5.20 -0.02 1.56 16 12 C 0.51 10.08 7.72 -10.99 -0.08 10.00 16 13 O -0.52 -12.05 15.25 5.54 0.08 -11.96 16 14 N -0.55 -11.03 2.33 -114.67 -0.27 -11.30 16 15 C 0.22 5.25 4.22 -5.20 -0.02 5.22 16 16 C -0.53 -15.20 9.88 -34.44 -0.34 -15.55 16 17 H 0.09 2.67 6.64 -52.49 -0.35 2.33 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -27.50 13.96 55.43 0.77 -26.72 16 20 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 24 C 0.10 1.70 3.93 -83.59 -0.33 1.37 16 25 C -0.09 -1.16 9.97 -39.41 -0.39 -1.55 16 26 C -0.13 -1.26 10.04 -39.60 -0.40 -1.66 16 27 C -0.09 -0.87 10.04 -39.56 -0.40 -1.27 16 28 C -0.16 -1.91 10.02 -39.54 -0.40 -2.30 16 29 C 0.12 1.97 7.31 -39.25 -0.29 1.69 16 30 F -0.12 -2.36 15.64 2.25 0.04 -2.32 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 33 H 0.05 0.38 7.68 -51.93 -0.40 -0.02 16 34 H 0.14 1.26 6.30 -52.48 -0.33 0.93 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.14 1.33 6.74 -52.49 -0.35 0.98 16 37 H 0.42 7.05 6.80 -40.82 -0.28 6.77 16 38 H 0.09 1.22 7.91 -51.93 -0.41 0.81 16 39 H 0.09 1.06 7.91 -51.93 -0.41 0.65 16 40 H 0.03 0.77 7.11 -51.93 -0.37 0.40 16 41 H 0.04 1.08 6.85 -51.93 -0.36 0.73 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 45 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 46 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 398.05 15.07 6.00 6.00 Total: -1.00 -34.69 398.05 -7.89 -42.58 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.36 Total: 6.31 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -4.00 Total: -2.19 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.17 Total: -49.22 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.11 Total: -16.11 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.07 Total: -4.01 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.69 -7.89 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095414049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.981 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds