Wall clock time and date at job start Tue Mar 31 2020 06:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38516 * 120.06564 * 359.72424 * 3 2 1 5 5 C 1.38455 * 119.99584 * 179.77075 * 4 3 2 6 6 F 1.35096 * 119.93806 * 180.23492 * 5 4 3 7 7 C 1.38452 * 120.12869 * 0.50487 * 5 4 3 8 8 C 1.38238 * 120.13396 * 359.75258 * 7 5 4 9 9 C 1.38702 * 120.00037 * 359.97438 * 8 7 5 10 10 N 1.40112 * 120.06096 * 179.97438 * 9 8 7 11 11 C 1.46499 * 120.00085 * 0.02562 * 10 9 8 12 12 C 1.50693 * 109.47216 * 180.02562 * 11 10 9 13 13 O 1.21296 * 120.00222 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00498 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00621 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47328 * 89.99292 * 15 14 12 17 17 H 1.07999 * 120.00162 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00163 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00049 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00087 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47228 * 89.99434 * 20 18 16 22 22 H 1.48494 * 109.47432 * 209.99720 * 20 18 16 23 23 H 1.48501 * 109.46800 * 330.00054 * 20 18 16 24 24 C 1.40047 * 119.99595 * 359.97438 * 14 12 11 25 25 C 1.38811 * 120.07532 * 90.00679 * 24 14 12 26 26 C 1.38140 * 119.95646 * 179.97438 * 25 24 14 27 27 C 1.38280 * 120.11156 * 0.02562 * 26 25 24 28 28 C 1.38267 * 120.15664 * 359.97248 * 27 26 25 29 29 C 1.38314 * 120.04490 * 359.75231 * 28 27 26 30 30 F 1.35098 * 120.05685 * 180.27466 * 29 28 27 31 31 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 33 33 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 34 34 H 1.08005 * 120.00166 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.93252 * 179.72598 * 7 5 4 36 36 H 1.07998 * 119.99938 * 179.97438 * 8 7 5 37 37 H 0.97000 * 120.00196 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.47488 * 300.00345 * 11 10 9 39 39 H 1.08997 * 109.47551 * 60.00002 * 11 10 9 40 40 H 1.08998 * 109.47267 * 209.99598 * 15 14 12 41 41 H 1.09004 * 109.46766 * 329.99829 * 15 14 12 42 42 H 0.96999 * 119.99881 * 179.97438 * 19 18 16 43 43 H 1.08000 * 120.02250 * 359.94890 * 25 24 14 44 44 H 1.08005 * 119.94501 * 179.97438 * 26 25 24 45 45 H 1.07996 * 119.92199 * 179.97438 * 27 26 25 46 46 H 1.07998 * 119.97662 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2935 2.3743 -0.0058 5 6 1.9236 3.6072 -0.0010 6 9 1.1880 4.7403 -0.0018 7 6 3.3062 3.6810 -0.0009 8 6 4.0629 2.5242 -0.0006 9 6 3.4374 1.2862 0.0003 10 7 4.2032 0.1129 0.0002 11 6 5.6660 0.1929 -0.0004 12 6 6.2451 -1.1983 -0.0011 13 8 5.5085 -2.1620 -0.0006 14 7 7.5817 -1.3720 -0.0011 15 6 8.1447 -2.7244 -0.0024 16 6 8.3378 -3.1869 -1.4235 17 1 8.0684 -2.5381 -2.2439 18 6 8.8583 -4.4383 -1.6766 19 7 9.0262 -4.8421 -2.9169 20 14 9.3235 -5.5608 -0.2578 21 1 8.1540 -6.3957 0.1170 22 1 10.4473 -6.4397 -0.6699 23 1 9.7390 -4.7394 0.9074 24 6 8.4323 -0.2594 -0.0011 25 6 8.8549 0.2931 1.2002 26 6 9.6944 1.3902 1.1973 27 6 10.1140 1.9395 -0.0003 28 6 9.6959 1.3929 -1.1995 29 6 8.8600 0.2909 -1.2042 30 9 8.4558 -0.2467 -2.3759 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 0.2149 2.3191 -0.0099 35 1 3.7944 4.6444 -0.0017 36 1 5.1412 2.5843 -0.0010 37 1 3.7648 -0.7524 0.0004 38 1 6.0005 0.7257 -0.8905 39 1 6.0011 0.7259 0.8894 40 1 9.1060 -2.7183 0.5115 41 1 7.4627 -3.4023 0.5108 42 1 9.3928 -5.7224 -3.0949 43 1 8.5274 -0.1343 2.1364 44 1 10.0228 1.8201 2.1321 45 1 10.7700 2.7974 0.0011 46 1 10.0258 1.8240 -2.1331 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095414049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:24 Heat of formation + Delta-G solvation = -107.946572 kcal Electronic energy + Delta-G solvation = -34310.528000 eV Core-core repulsion = 29415.452701 eV Total energy + Delta-G solvation = -4895.075299 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.139 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.78398 -49.74277 -41.59479 -41.05621 -39.58297 -38.47137 -36.83093 -36.02998 -34.76665 -31.73784 -31.47377 -31.33984 -30.79847 -29.55938 -28.14619 -27.35871 -24.53231 -24.12194 -23.55592 -23.42702 -22.63394 -20.75305 -19.72647 -19.21820 -19.04697 -18.30324 -18.03017 -17.62474 -17.39628 -17.25334 -16.93107 -16.81807 -16.42691 -16.39511 -16.22808 -16.11176 -15.91459 -15.55196 -15.40942 -15.25210 -14.93041 -14.69583 -14.53328 -14.28005 -14.05428 -13.81111 -13.75628 -13.52802 -13.42165 -13.21906 -13.07230 -12.81399 -12.53488 -12.44316 -12.25886 -12.23838 -12.03115 -11.96413 -11.72392 -11.17879 -11.03948 -10.85316 -9.90121 -9.84656 -9.69504 -9.56297 -8.34154 -8.22516 -6.39929 0.13187 0.22856 0.28367 0.35495 1.28746 1.33309 1.40275 1.41653 1.79151 2.24507 2.28421 2.50613 2.63707 2.64361 2.98440 3.30842 3.38875 3.41596 3.71685 3.90844 4.04460 4.10515 4.14116 4.14934 4.22737 4.34098 4.35122 4.37219 4.42247 4.43977 4.54913 4.69633 4.72798 4.77062 4.81453 5.05518 5.09184 5.14124 5.24357 5.24685 5.32098 5.41621 5.43979 5.49044 5.72780 5.90371 5.95482 6.21033 6.35045 6.50532 6.64449 6.65976 7.04328 7.24044 8.82771 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.009498 B = 0.002886 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.132114 B = 9700.598864 C =11694.706760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.338 6.338 3 C 0.070 3.930 4 C -0.196 4.196 5 C 0.059 3.941 6 F -0.148 7.148 7 C -0.127 4.127 8 C -0.143 4.143 9 C 0.174 3.826 10 N -0.736 5.736 11 C 0.127 3.873 12 C 0.504 3.496 13 O -0.569 6.569 14 N -0.552 5.552 15 C 0.229 3.771 16 C -0.539 4.539 17 H 0.038 0.962 18 C 0.011 3.989 19 N -0.945 5.945 20 Si 0.945 3.055 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.237 1.237 24 C 0.069 3.931 25 C -0.090 4.090 26 C -0.107 4.107 27 C -0.071 4.071 28 C -0.152 4.152 29 C 0.075 3.925 30 F -0.156 7.156 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.156 0.844 37 H 0.406 0.594 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.049 0.951 41 H 0.030 0.970 42 H 0.268 0.732 43 H 0.147 0.853 44 H 0.175 0.825 45 H 0.177 0.823 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.941 22.186 12.474 26.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.252 6.252 3 C 0.021 3.979 4 C -0.216 4.216 5 C 0.037 3.963 6 F -0.126 7.126 7 C -0.146 4.146 8 C -0.166 4.166 9 C 0.071 3.929 10 N -0.370 5.370 11 C 0.000 4.000 12 C 0.294 3.706 13 O -0.447 6.447 14 N -0.280 5.280 15 C 0.108 3.892 16 C -0.577 4.577 17 H 0.057 0.943 18 C -0.186 4.186 19 N -0.585 5.585 20 Si 0.767 3.233 21 H -0.199 1.199 22 H -0.201 1.201 23 H -0.160 1.160 24 C -0.022 4.022 25 C -0.110 4.110 26 C -0.125 4.125 27 C -0.088 4.088 28 C -0.171 4.171 29 C 0.054 3.946 30 F -0.134 7.134 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.173 0.827 37 H 0.243 0.757 38 H 0.107 0.893 39 H 0.139 0.861 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.165 0.835 44 H 0.193 0.807 45 H 0.194 0.806 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.040 21.342 12.324 25.374 hybrid contribution -0.599 -1.668 -0.816 1.952 sum -6.640 19.673 11.508 23.739 Atomic orbital electron populations 1.23312 0.76337 1.05330 1.02340 1.86064 1.23559 1.26160 1.89427 1.18298 0.90172 0.85127 1.04294 1.21017 1.01476 0.90206 1.08898 1.17277 0.89625 0.81329 1.08024 1.91453 1.77415 1.49206 1.94566 1.21040 0.91189 1.00218 1.02193 1.20578 1.01119 0.88598 1.06291 1.17546 0.87509 0.87788 1.00032 1.44353 1.03408 1.06732 1.82477 1.20969 0.81777 0.92673 1.04599 1.21098 0.81979 0.92088 0.75464 1.90656 1.59093 1.43903 1.51097 1.45267 1.04582 1.06420 1.71691 1.19476 0.94170 0.79547 0.96025 1.21616 1.42166 1.01518 0.92408 0.94339 1.25836 0.95010 0.99230 0.98562 1.70062 1.46571 1.20556 1.21296 0.85764 0.78395 0.79153 0.79960 1.19946 1.20057 1.15996 1.18082 0.99521 0.91049 0.93561 1.21532 0.97193 0.96503 0.95725 1.21545 0.96067 0.94568 1.00331 1.21548 0.97554 0.99712 0.89995 1.21420 0.98378 0.95072 1.02263 1.18722 0.99495 0.95796 0.80574 1.91507 1.89231 1.85889 1.46805 0.86981 0.91686 0.91252 0.82658 0.82081 0.82650 0.75659 0.89311 0.86144 0.93312 0.95183 0.92340 0.83523 0.80723 0.80605 0.83248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.46 16 2 O -0.34 -8.85 9.74 -93.57 -0.91 -9.76 16 3 C 0.07 1.78 6.70 22.59 0.15 1.94 16 4 C -0.20 -4.20 9.01 22.39 0.20 -3.99 16 5 C 0.06 1.24 7.30 22.37 0.16 1.41 16 6 F -0.15 -3.18 17.26 44.97 0.78 -2.40 16 7 C -0.13 -2.37 10.02 22.32 0.22 -2.14 16 8 C -0.14 -2.97 9.31 22.38 0.21 -2.76 16 9 C 0.17 4.61 6.67 38.18 0.25 4.87 16 10 N -0.74 -22.84 5.71 -342.62 -1.96 -24.80 16 11 C 0.13 3.81 4.21 85.63 0.36 4.17 16 12 C 0.50 20.74 7.72 87.65 0.68 21.42 16 13 O -0.57 -28.29 15.25 -3.08 -0.05 -28.34 16 14 N -0.55 -22.86 2.33 -635.09 -1.48 -24.33 16 15 C 0.23 11.28 4.22 85.63 0.36 11.64 16 16 C -0.54 -32.44 9.88 25.60 0.25 -32.18 16 17 H 0.04 2.62 6.64 -2.91 -0.02 2.60 16 18 C 0.01 0.69 5.47 84.65 0.46 1.15 16 19 N -0.94 -61.16 13.96 21.45 0.30 -60.86 16 20 Si 0.94 44.85 27.47 68.60 1.88 46.74 16 21 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 24 C 0.07 2.23 3.93 38.16 0.15 2.38 16 25 C -0.09 -1.96 9.97 22.38 0.22 -1.74 16 26 C -0.11 -1.46 10.04 22.26 0.22 -1.24 16 27 C -0.07 -0.98 10.04 22.29 0.22 -0.76 16 28 C -0.15 -3.41 10.02 22.29 0.22 -3.19 16 29 C 0.07 2.49 7.31 22.48 0.16 2.66 16 30 F -0.16 -6.92 15.64 44.97 0.70 -6.21 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 0.91 7.65 -2.39 -0.02 0.89 16 33 H 0.07 0.91 7.68 -2.38 -0.02 0.89 16 34 H 0.16 2.62 6.30 -2.91 -0.02 2.60 16 35 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.16 2.59 6.74 -2.91 -0.02 2.57 16 37 H 0.41 14.66 6.80 -92.71 -0.63 14.03 16 38 H 0.09 2.59 7.91 -2.39 -0.02 2.57 16 39 H 0.12 2.72 7.91 -2.39 -0.02 2.71 16 40 H 0.05 2.24 7.11 -2.39 -0.02 2.22 16 41 H 0.03 1.56 6.85 -2.39 -0.02 1.54 16 42 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 43 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 44 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 45 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 46 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -84.68 398.05 5.27 -79.41 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.36 Total: 25.48 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 5.64 Total: 5.09 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -3.13 Total: -110.00 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.96 Total: -38.10 kcal Atomic # 9 Polarization: -10.09 SS G_CDS: 1.48 Total: -8.61 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -84.68 5.27 -79.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095414049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.541 kcal (2) G-P(sol) polarization free energy of solvation -84.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds