Wall clock time and date at job start Tue Mar 31 2020 06:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86799 * 120.00176 * 2 1 4 4 H 1.48500 * 109.47186 * 264.99684 * 3 2 1 5 5 H 1.48493 * 109.47060 * 25.00270 * 3 2 1 6 6 H 1.48507 * 109.47044 * 145.00024 * 3 2 1 7 7 C 1.39882 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99795 * 141.05057 * 7 2 1 9 9 C 1.41178 * 119.99859 * 321.04197 * 7 2 1 10 10 C 1.40854 * 120.17530 * 172.86046 * 9 7 2 11 11 C 1.36400 * 119.82111 * 180.02562 * 10 9 7 12 12 C 1.39362 * 120.17819 * 0.02562 * 11 10 9 13 13 O 1.35620 * 119.82373 * 179.71993 * 12 11 10 14 14 C 1.35905 * 117.99687 * 71.54560 * 13 12 11 15 15 C 1.38803 * 119.98668 * 4.80780 * 14 13 12 16 16 C 1.38041 * 120.01173 * 179.76486 * 15 14 13 17 17 C 1.38909 * 119.98888 * 0.50677 * 16 15 14 18 18 N 1.39926 * 120.01362 * 179.71975 * 17 16 15 19 19 C 1.34771 * 120.00080 * 32.93538 * 18 17 16 20 20 O 1.21501 * 120.00217 * 5.25278 * 19 18 17 21 21 C 1.48406 * 120.00422 * 185.25114 * 19 18 17 22 22 C 1.41169 * 120.53691 * 359.97438 * 21 19 18 23 23 C 1.35253 * 119.86457 * 179.97438 * 22 21 19 24 24 N 1.35706 * 120.99853 * 359.97438 * 23 22 21 25 25 H 0.97000 * 119.43891 * 179.97438 * 24 23 22 26 26 C 1.34603 * 121.12816 * 0.02562 * 24 23 22 27 27 O 1.22011 * 119.96170 * 180.02562 * 26 24 23 28 28 C 1.38328 * 120.54198 * 179.71843 * 21 19 18 29 29 C 1.38917 * 119.97029 * 359.74778 * 17 16 15 30 30 C 1.38036 * 119.98817 * 359.97438 * 29 17 16 31 31 C 1.39372 * 120.35897 * 0.02562 * 12 11 10 32 32 C 1.36403 * 120.17556 * 359.97438 * 31 12 11 33 33 H 0.97001 * 119.99328 * 359.97438 * 1 2 3 34 34 H 1.08012 * 120.08737 * 0.02562 * 10 9 7 35 35 H 1.08001 * 119.91435 * 179.97438 * 11 10 9 36 36 H 1.08005 * 119.99455 * 0.02562 * 15 14 13 37 37 H 1.08003 * 120.00533 * 180.25845 * 16 15 14 38 38 H 0.97001 * 119.99999 * 212.92691 * 18 17 16 39 39 H 1.08004 * 120.07035 * 359.97438 * 22 21 19 40 40 H 1.07992 * 119.50142 * 180.02562 * 23 22 21 41 41 H 1.07999 * 120.49583 * 0.02562 * 28 21 19 42 42 H 1.08004 * 120.00284 * 179.97438 * 29 17 16 43 43 H 1.07997 * 119.99279 * 179.97438 * 30 29 17 44 44 H 1.07993 * 119.91363 * 179.97438 * 31 12 11 45 45 H 1.08001 * 120.09002 * 179.97438 * 32 31 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.5962 1.9853 -1.3947 5 1 1.3916 2.6808 0.5917 6 1 3.4837 1.4729 0.8031 7 6 2.0082 -1.2115 -0.0005 8 1 2.9081 -1.3152 -0.5886 9 6 1.5377 -2.2984 0.7677 10 6 2.1492 -3.5623 0.6552 11 6 1.6884 -4.6076 1.4005 12 6 0.6152 -4.4279 2.2712 13 8 0.1592 -5.4735 3.0046 14 6 0.9323 -5.9190 4.0297 15 6 2.0992 -5.2450 4.3624 16 6 2.8822 -5.6942 5.4067 17 6 2.5077 -6.8271 6.1180 18 7 3.3041 -7.2862 7.1729 19 6 3.9873 -6.4079 7.9333 20 8 3.8381 -5.2139 7.7650 21 6 4.9219 -6.8991 8.9762 22 6 5.1037 -8.2838 9.1819 23 6 5.9593 -8.7164 10.1358 24 7 6.6517 -7.8378 10.9041 25 1 7.2592 -8.1730 11.5821 26 6 6.5092 -6.5092 10.7423 27 8 7.1426 -5.7383 11.4446 28 6 5.6331 -6.0075 9.7590 29 6 1.3425 -7.5043 5.7812 30 6 0.5573 -7.0508 4.7404 31 6 0.0039 -3.1808 2.3876 32 6 0.4528 -2.1255 1.6492 33 1 -0.4849 0.8401 0.0004 34 1 2.9809 -3.7033 -0.0195 35 1 2.1560 -5.5774 1.3151 36 1 2.3924 -4.3665 3.8068 37 1 3.7880 -5.1672 5.6681 38 1 3.3645 -8.2367 7.3570 39 1 4.5606 -8.9964 8.5787 40 1 6.0942 -9.7770 10.2879 41 1 5.5164 -4.9428 9.6208 42 1 1.0510 -8.3854 6.3336 43 1 -0.3484 -7.5775 4.4782 44 1 -0.8275 -3.0497 3.0642 45 1 -0.0222 -1.1598 1.7402 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095414794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:01 Heat of formation + Delta-G solvation = -13.162975 kcal Electronic energy + Delta-G solvation = -31381.362925 eV Core-core repulsion = 26908.794186 eV Total energy + Delta-G solvation = -4472.568739 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.126 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.73983 -40.55363 -39.62445 -37.83234 -37.34297 -36.57246 -34.66862 -34.03321 -33.66498 -30.78950 -30.43256 -29.90029 -29.42388 -28.66828 -25.90806 -25.07230 -23.86154 -22.93854 -22.44023 -21.22682 -20.72121 -20.52249 -19.39777 -18.33410 -18.01331 -17.83381 -17.53368 -16.81742 -16.28112 -16.10774 -15.83060 -15.47869 -15.02183 -14.80970 -14.71406 -14.64891 -14.29473 -14.12016 -13.74240 -13.61817 -13.15317 -12.95099 -12.87812 -12.63390 -12.53396 -12.33613 -12.25206 -12.06467 -11.86032 -11.27655 -11.22172 -11.08020 -10.90057 -10.86462 -10.73407 -10.57691 -10.21820 -10.12858 -9.84130 -9.48333 -8.96117 -8.74793 -8.62521 -7.73956 -7.69068 -7.33952 -7.19751 -4.47090 -0.08724 1.06115 1.56845 1.63991 2.35466 2.46536 2.52581 2.68385 2.90151 2.95141 2.96604 3.09494 3.24561 3.72272 3.92300 4.01412 4.07515 4.11814 4.28874 4.44710 4.48926 4.75760 5.10174 5.13146 5.19483 5.45860 5.50361 5.55357 5.65467 5.66343 5.77207 5.98918 6.02981 6.12937 6.19652 6.29887 6.32060 6.41638 6.65154 6.74011 6.78184 6.83005 6.95487 7.10712 7.12656 7.19189 7.39716 7.45182 7.50610 7.80620 7.82519 7.88312 8.01850 8.31740 8.53428 8.64135 8.89634 9.71542 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.001757 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.624160 B =15934.704859 C =17833.800226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.089 3.911 3 Si 0.901 3.099 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.448 4.448 8 H 0.087 0.913 9 C 0.111 3.889 10 C -0.233 4.233 11 C -0.078 4.078 12 C -0.103 4.103 13 O -0.244 6.244 14 C 0.128 3.872 15 C -0.174 4.174 16 C -0.078 4.078 17 C 0.079 3.921 18 N -0.655 5.655 19 C 0.547 3.453 20 O -0.501 6.501 21 C -0.031 4.031 22 C -0.218 4.218 23 C 0.136 3.864 24 N -0.605 5.605 25 H 0.418 0.582 26 C 0.516 3.484 27 O -0.540 6.540 28 C -0.165 4.165 29 C -0.105 4.105 30 C -0.149 4.149 31 C -0.076 4.076 32 C -0.193 4.193 33 H 0.289 0.711 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.407 0.593 39 H 0.149 0.851 40 H 0.172 0.828 41 H 0.166 0.834 42 H 0.125 0.875 43 H 0.130 0.870 44 H 0.094 0.906 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.800 -18.733 16.695 26.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.473 4.473 8 H 0.105 0.895 9 C 0.108 3.892 10 C -0.252 4.252 11 C -0.097 4.097 12 C -0.145 4.145 13 O -0.154 6.154 14 C 0.083 3.917 15 C -0.193 4.193 16 C -0.098 4.098 17 C -0.013 4.013 18 N -0.301 5.301 19 C 0.334 3.666 20 O -0.375 6.375 21 C -0.037 4.037 22 C -0.241 4.241 23 C 0.008 3.992 24 N -0.237 5.237 25 H 0.256 0.744 26 C 0.315 3.685 27 O -0.421 6.421 28 C -0.188 4.188 29 C -0.125 4.125 30 C -0.169 4.169 31 C -0.094 4.094 32 C -0.212 4.212 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.243 0.757 39 H 0.167 0.833 40 H 0.189 0.811 41 H 0.183 0.817 42 H 0.143 0.857 43 H 0.148 0.852 44 H 0.112 0.888 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.591 -17.230 16.815 25.244 hybrid contribution 0.617 0.026 0.272 0.675 sum 8.208 -17.205 17.087 25.599 Atomic orbital electron populations 1.69987 1.08514 1.30736 1.27060 1.26145 0.94316 1.02334 0.90940 0.86440 0.81468 0.79857 0.79945 1.18917 1.19691 1.17784 1.19650 1.08906 0.95142 1.23605 0.89496 1.17625 0.90055 0.91276 0.90254 1.20418 1.05234 0.93080 1.06476 1.20463 0.95387 0.97480 0.96387 1.18019 1.05907 0.87594 1.02980 1.84498 1.44362 1.47267 1.39312 1.19811 0.90733 0.92692 0.88481 1.21424 0.95880 1.02396 0.99569 1.20912 0.99988 0.95480 0.93401 1.17449 0.93249 0.98981 0.91636 1.43153 1.46260 1.10187 1.30470 1.18369 0.80766 0.86271 0.81239 1.90860 1.63393 1.15355 1.67890 1.20424 0.94833 0.93884 0.94600 1.20632 1.05292 0.94754 1.03439 1.21816 0.91024 0.95954 0.90380 1.43574 1.38805 1.07894 1.33442 0.74413 1.17075 0.84511 0.81132 0.85785 1.91044 1.48328 1.54869 1.47819 1.22811 0.97514 1.02477 0.95995 1.20489 0.92677 1.00834 0.98546 1.20137 1.01871 0.96898 0.97945 1.20391 0.98704 0.91334 0.99020 1.20899 1.01264 0.98056 1.00960 0.89961 0.88492 0.88954 0.84173 0.85080 0.75659 0.83336 0.81128 0.81670 0.85666 0.85186 0.88750 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -17.79 11.31 55.54 0.63 -17.17 16 2 C 0.09 2.08 4.81 -17.34 -0.08 1.99 16 3 Si 0.90 17.31 29.69 -169.99 -5.05 12.27 16 4 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.25 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.45 -11.22 8.93 -37.85 -0.34 -11.56 16 8 H 0.09 2.09 8.05 -52.49 -0.42 1.66 16 9 C 0.11 2.85 5.70 -106.80 -0.61 2.24 16 10 C -0.23 -5.56 9.74 -39.25 -0.38 -5.95 16 11 C -0.08 -1.78 8.58 -39.83 -0.34 -2.12 16 12 C -0.10 -2.37 4.58 -38.74 -0.18 -2.55 16 13 O -0.24 -5.20 9.97 -2.77 -0.03 -5.22 16 14 C 0.13 2.37 6.57 -39.16 -0.26 2.12 16 15 C -0.17 -3.23 8.86 -39.44 -0.35 -3.57 16 16 C -0.08 -1.28 8.65 -39.41 -0.34 -1.62 16 17 C 0.08 1.06 6.29 -83.66 -0.53 0.53 16 18 N -0.65 -6.35 5.29 -10.53 -0.06 -6.40 16 19 C 0.55 6.29 7.54 -12.08 -0.09 6.19 16 20 O -0.50 -8.00 14.05 5.37 0.08 -7.93 16 21 C -0.03 -0.26 5.91 -104.56 -0.62 -0.88 16 22 C -0.22 -0.87 9.50 -39.53 -0.38 -1.24 16 23 C 0.14 0.28 11.15 -16.90 -0.19 0.10 16 24 N -0.60 -2.80 5.23 -14.96 -0.08 -2.87 16 25 H 0.42 0.90 8.88 -40.82 -0.36 0.54 16 26 C 0.52 4.98 7.70 -15.32 -0.12 4.86 16 27 O -0.54 -7.43 17.93 4.91 0.09 -7.34 16 28 C -0.16 -1.66 9.61 -38.53 -0.37 -2.03 16 29 C -0.11 -1.29 9.96 -39.40 -0.39 -1.68 16 30 C -0.15 -2.22 9.98 -39.45 -0.39 -2.61 16 31 C -0.08 -1.81 9.92 -39.82 -0.40 -2.21 16 32 C -0.19 -4.90 8.88 -39.26 -0.35 -5.24 16 33 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 34 H 0.10 2.16 8.06 -52.48 -0.42 1.73 16 35 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.14 2.89 6.28 -52.48 -0.33 2.56 16 37 H 0.13 2.21 6.38 -52.48 -0.33 1.88 16 38 H 0.41 2.17 6.94 -40.82 -0.28 1.89 16 39 H 0.15 0.15 6.51 -52.48 -0.34 -0.19 16 40 H 0.17 -0.41 8.06 -52.49 -0.42 -0.84 16 41 H 0.17 1.90 7.69 -52.49 -0.40 1.50 16 42 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 43 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 45 H 0.12 3.11 5.81 -52.49 -0.30 2.81 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -33.71 390.84 -9.68 -43.38 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -4.45 Total: 10.63 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -6.70 Total: -25.23 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.49 Total: -26.44 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.14 Total: -20.49 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.05 Total: 12.27 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.71 -9.68 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095414794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.221 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds