Wall clock time and date at job start Tue Mar 31 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86799 * 120.00176 * 2 1 4 4 H 1.48500 * 109.47186 * 264.99684 * 3 2 1 5 5 H 1.48493 * 109.47060 * 25.00270 * 3 2 1 6 6 H 1.48507 * 109.47044 * 145.00024 * 3 2 1 7 7 C 1.39882 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99795 * 141.05057 * 7 2 1 9 9 C 1.41178 * 119.99859 * 321.04197 * 7 2 1 10 10 C 1.40854 * 120.17530 * 172.86046 * 9 7 2 11 11 C 1.36400 * 119.82111 * 180.02562 * 10 9 7 12 12 C 1.39362 * 120.17819 * 0.02562 * 11 10 9 13 13 O 1.35620 * 119.82373 * 179.71993 * 12 11 10 14 14 C 1.35905 * 117.99687 * 71.54560 * 13 12 11 15 15 C 1.38803 * 119.98668 * 4.80780 * 14 13 12 16 16 C 1.38041 * 120.01173 * 179.76486 * 15 14 13 17 17 C 1.38909 * 119.98888 * 0.50677 * 16 15 14 18 18 N 1.39926 * 120.01362 * 179.71975 * 17 16 15 19 19 C 1.34771 * 120.00080 * 32.93538 * 18 17 16 20 20 O 1.21501 * 120.00217 * 5.25278 * 19 18 17 21 21 C 1.48406 * 120.00422 * 185.25114 * 19 18 17 22 22 C 1.41169 * 120.53691 * 359.97438 * 21 19 18 23 23 C 1.35253 * 119.86457 * 179.97438 * 22 21 19 24 24 N 1.35706 * 120.99853 * 359.97438 * 23 22 21 25 25 H 0.97000 * 119.43891 * 179.97438 * 24 23 22 26 26 C 1.34603 * 121.12816 * 0.02562 * 24 23 22 27 27 O 1.22011 * 119.96170 * 180.02562 * 26 24 23 28 28 C 1.38328 * 120.54198 * 179.71843 * 21 19 18 29 29 C 1.38917 * 119.97029 * 359.74778 * 17 16 15 30 30 C 1.38036 * 119.98817 * 359.97438 * 29 17 16 31 31 C 1.39372 * 120.35897 * 0.02562 * 12 11 10 32 32 C 1.36403 * 120.17556 * 359.97438 * 31 12 11 33 33 H 0.97001 * 119.99328 * 359.97438 * 1 2 3 34 34 H 1.08012 * 120.08737 * 0.02562 * 10 9 7 35 35 H 1.08001 * 119.91435 * 179.97438 * 11 10 9 36 36 H 1.08005 * 119.99455 * 0.02562 * 15 14 13 37 37 H 1.08003 * 120.00533 * 180.25845 * 16 15 14 38 38 H 0.97001 * 119.99999 * 212.92691 * 18 17 16 39 39 H 1.08004 * 120.07035 * 359.97438 * 22 21 19 40 40 H 1.07992 * 119.50142 * 180.02562 * 23 22 21 41 41 H 1.07999 * 120.49583 * 0.02562 * 28 21 19 42 42 H 1.08004 * 120.00284 * 179.97438 * 29 17 16 43 43 H 1.07997 * 119.99279 * 179.97438 * 30 29 17 44 44 H 1.07993 * 119.91363 * 179.97438 * 31 12 11 45 45 H 1.08001 * 120.09002 * 179.97438 * 32 31 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.5962 1.9853 -1.3947 5 1 1.3916 2.6808 0.5917 6 1 3.4837 1.4729 0.8031 7 6 2.0082 -1.2115 -0.0005 8 1 2.9081 -1.3152 -0.5886 9 6 1.5377 -2.2984 0.7677 10 6 2.1492 -3.5623 0.6552 11 6 1.6884 -4.6076 1.4005 12 6 0.6152 -4.4279 2.2712 13 8 0.1592 -5.4735 3.0046 14 6 0.9323 -5.9190 4.0297 15 6 2.0992 -5.2450 4.3624 16 6 2.8822 -5.6942 5.4067 17 6 2.5077 -6.8271 6.1180 18 7 3.3041 -7.2862 7.1729 19 6 3.9873 -6.4079 7.9333 20 8 3.8381 -5.2139 7.7650 21 6 4.9219 -6.8991 8.9762 22 6 5.1037 -8.2838 9.1819 23 6 5.9593 -8.7164 10.1358 24 7 6.6517 -7.8378 10.9041 25 1 7.2592 -8.1730 11.5821 26 6 6.5092 -6.5092 10.7423 27 8 7.1426 -5.7383 11.4446 28 6 5.6331 -6.0075 9.7590 29 6 1.3425 -7.5043 5.7812 30 6 0.5573 -7.0508 4.7404 31 6 0.0039 -3.1808 2.3876 32 6 0.4528 -2.1255 1.6492 33 1 -0.4849 0.8401 0.0004 34 1 2.9809 -3.7033 -0.0195 35 1 2.1560 -5.5774 1.3151 36 1 2.3924 -4.3665 3.8068 37 1 3.7880 -5.1672 5.6681 38 1 3.3645 -8.2367 7.3570 39 1 4.5606 -8.9964 8.5787 40 1 6.0942 -9.7770 10.2879 41 1 5.5164 -4.9428 9.6208 42 1 1.0510 -8.3854 6.3336 43 1 -0.3484 -7.5775 4.4782 44 1 -0.8275 -3.0497 3.0642 45 1 -0.0222 -1.1598 1.7402 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095414794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:00 Heat of formation + Delta-G solvation = -35.413363 kcal Electronic energy + Delta-G solvation = -31382.327774 eV Core-core repulsion = 26908.794186 eV Total energy + Delta-G solvation = -4473.533588 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.126 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.39784 -41.67370 -40.99068 -39.26884 -38.21614 -37.99330 -35.83229 -35.44422 -34.64415 -32.07971 -31.71071 -31.21799 -30.94415 -29.92852 -27.18226 -26.40876 -24.37598 -24.16787 -23.79127 -23.03892 -22.20434 -21.66421 -19.90462 -19.50733 -19.29381 -19.20279 -18.75768 -17.67696 -17.35868 -17.22071 -16.85072 -16.67189 -16.38862 -16.07020 -15.92658 -15.80599 -15.43781 -15.27002 -15.03482 -14.60633 -14.53345 -14.30921 -14.12751 -14.08157 -13.88325 -13.53117 -13.37946 -13.21855 -13.05918 -12.99608 -12.82262 -12.65189 -12.32510 -12.13278 -11.83571 -11.70164 -11.53635 -11.45572 -11.14253 -10.99000 -10.68763 -9.97858 -9.63811 -9.50514 -9.14840 -8.98898 -8.66724 -6.36552 -0.74685 0.32994 0.38334 0.64758 0.71570 1.03892 1.31913 1.41741 1.53719 1.64070 1.76577 1.92457 2.09794 2.34858 2.58779 2.80577 2.84033 3.32431 3.60256 3.70551 3.80497 3.94593 3.98852 4.07144 4.28789 4.30062 4.32454 4.34082 4.47908 4.53762 4.69847 4.76953 4.92350 4.98921 5.02674 5.09622 5.11691 5.17663 5.21900 5.27924 5.40659 5.50578 5.53926 5.59853 5.66729 5.81446 5.90846 5.96372 5.98711 6.14235 6.32169 6.44421 6.72563 6.75075 6.86481 6.97282 7.12238 7.98037 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.001757 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.624160 B =15934.704859 C =17833.800226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.052 3.948 3 Si 0.975 3.025 4 H -0.251 1.251 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.480 4.480 8 H 0.088 0.912 9 C 0.082 3.918 10 C -0.246 4.246 11 C -0.078 4.078 12 C -0.093 4.093 13 O -0.258 6.258 14 C 0.094 3.906 15 C -0.192 4.192 16 C -0.095 4.095 17 C 0.094 3.906 18 N -0.632 5.632 19 C 0.543 3.457 20 O -0.555 6.555 21 C -0.009 4.009 22 C -0.228 4.228 23 C 0.175 3.825 24 N -0.585 5.585 25 H 0.434 0.566 26 C 0.510 3.490 27 O -0.601 6.601 28 C -0.218 4.218 29 C -0.081 4.081 30 C -0.139 4.139 31 C -0.088 4.088 32 C -0.214 4.214 33 H 0.301 0.699 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.434 0.566 39 H 0.193 0.807 40 H 0.239 0.761 41 H 0.129 0.871 42 H 0.184 0.816 43 H 0.155 0.845 44 H 0.103 0.897 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.017 -23.821 18.511 31.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.172 4.172 3 Si 0.794 3.206 4 H -0.174 1.174 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.505 4.505 8 H 0.106 0.894 9 C 0.079 3.921 10 C -0.265 4.265 11 C -0.096 4.096 12 C -0.135 4.135 13 O -0.170 6.170 14 C 0.050 3.950 15 C -0.212 4.212 16 C -0.115 4.115 17 C 0.000 4.000 18 N -0.280 5.280 19 C 0.331 3.669 20 O -0.432 6.432 21 C -0.017 4.017 22 C -0.249 4.249 23 C 0.046 3.954 24 N -0.215 5.215 25 H 0.275 0.725 26 C 0.312 3.688 27 O -0.488 6.488 28 C -0.242 4.242 29 C -0.101 4.101 30 C -0.158 4.158 31 C -0.106 4.106 32 C -0.233 4.233 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.276 0.724 39 H 0.210 0.790 40 H 0.256 0.744 41 H 0.147 0.853 42 H 0.201 0.799 43 H 0.173 0.827 44 H 0.121 0.879 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.807 -22.424 18.641 30.188 hybrid contribution 0.522 1.273 -0.162 1.386 sum 8.329 -21.151 18.479 29.295 Atomic orbital electron populations 1.69972 1.09860 1.32338 1.27089 1.26985 0.94977 1.05214 0.89986 0.85328 0.79543 0.75334 0.80403 1.17450 1.18519 1.18529 1.19903 1.09512 0.96415 1.24703 0.89395 1.17957 0.90703 0.92351 0.91048 1.20611 1.05770 0.93016 1.07138 1.20633 0.95218 0.97993 0.95798 1.18033 1.04992 0.87645 1.02850 1.84370 1.45280 1.46783 1.40558 1.20042 0.91015 0.94734 0.89229 1.21169 0.97135 1.02111 1.00750 1.20847 0.99640 0.97226 0.93834 1.17538 0.93760 0.97447 0.91243 1.42963 1.44894 1.11432 1.28733 1.18948 0.80660 0.85703 0.81541 1.90856 1.64912 1.18013 1.69437 1.20352 0.92879 0.95982 0.92458 1.21116 1.06442 0.92577 1.04796 1.22913 0.87334 0.98020 0.87096 1.43518 1.38182 1.06518 1.33331 0.72495 1.16927 0.84060 0.82596 0.85206 1.90999 1.50880 1.56776 1.50103 1.22463 1.01079 1.01504 0.99115 1.21000 0.90589 1.01476 0.97005 1.20552 1.02799 0.95108 0.97370 1.20568 0.99238 0.91735 0.99080 1.20875 1.02130 0.98150 1.02189 0.88790 0.87451 0.87070 0.87694 0.86673 0.72375 0.79031 0.74444 0.85326 0.79873 0.82698 0.87856 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -38.28 11.31 21.82 0.25 -38.03 16 2 C 0.05 2.52 4.81 85.23 0.41 2.93 16 3 Si 0.98 36.26 29.69 68.60 2.04 38.30 16 4 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 5 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.48 -25.26 8.93 23.39 0.21 -25.05 16 8 H 0.09 4.43 8.05 -2.91 -0.02 4.40 16 9 C 0.08 4.48 5.70 -21.28 -0.12 4.36 16 10 C -0.25 -12.37 9.74 22.48 0.22 -12.16 16 11 C -0.08 -3.68 8.58 22.11 0.19 -3.49 16 12 C -0.09 -4.46 4.58 22.81 0.10 -4.36 16 13 O -0.26 -11.20 9.97 -32.82 -0.33 -11.52 16 14 C 0.09 3.47 6.57 22.54 0.15 3.62 16 15 C -0.19 -7.48 8.86 22.36 0.20 -7.28 16 16 C -0.10 -3.20 8.65 22.38 0.19 -3.00 16 17 C 0.09 2.24 6.29 38.17 0.24 2.48 16 18 N -0.63 -9.90 5.29 -305.52 -1.62 -11.52 16 19 C 0.54 11.94 7.54 86.95 0.66 12.60 16 20 O -0.55 -18.74 14.05 -3.72 -0.05 -18.80 16 21 C -0.01 -0.14 5.91 -19.83 -0.12 -0.26 16 22 C -0.23 -0.53 9.50 22.30 0.21 -0.32 16 23 C 0.17 -0.41 11.15 83.41 0.93 0.52 16 24 N -0.58 -3.42 5.23 -319.44 -1.67 -5.09 16 25 H 0.43 0.24 8.88 -92.71 -0.82 -0.58 16 26 C 0.51 10.01 7.70 84.93 0.65 10.66 16 27 O -0.60 -17.84 17.93 -5.35 -0.10 -17.94 16 28 C -0.22 -4.73 9.61 22.95 0.22 -4.51 16 29 C -0.08 -1.58 9.96 22.38 0.22 -1.35 16 30 C -0.14 -3.69 9.98 22.36 0.22 -3.47 16 31 C -0.09 -4.43 9.92 22.11 0.22 -4.21 16 32 C -0.21 -11.59 8.88 22.48 0.20 -11.39 16 33 H 0.30 13.13 8.30 -92.71 -0.77 12.36 16 34 H 0.11 5.00 8.06 -2.90 -0.02 4.98 16 35 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 36 H 0.10 4.75 6.28 -2.91 -0.02 4.73 16 37 H 0.12 4.19 6.38 -2.91 -0.02 4.17 16 38 H 0.43 1.86 6.94 -92.71 -0.64 1.21 16 39 H 0.19 -1.20 6.51 -2.91 -0.02 -1.22 16 40 H 0.24 -3.51 8.06 -2.91 -0.02 -3.53 16 41 H 0.13 3.60 7.69 -2.91 -0.02 3.58 16 42 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 43 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 44 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 45 H 0.11 6.08 5.81 -2.91 -0.02 6.07 16 Total: -1.00 -86.76 390.84 3.36 -83.40 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -0.37 Total: 24.87 kcal Atomic # 6 Polarization: -48.89 SS G_CDS: 5.21 Total: -43.67 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -3.04 Total: -54.64 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -0.48 Total: -48.26 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.04 Total: 38.30 kcal Total: -86.76 3.36 -83.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095414794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.991 kcal (2) G-P(sol) polarization free energy of solvation -86.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds