Wall clock time and date at job start Tue Mar 31 2020 07:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50690 * 120.00337 * 2 1 4 4 N 1.46497 * 109.47400 * 125.54280 * 3 2 1 5 5 C 1.46505 * 119.99857 * 83.57644 * 4 3 2 6 6 C 1.50698 * 109.47143 * 82.76960 * 5 4 3 7 7 C 1.38216 * 120.00366 * 261.46530 * 6 5 4 8 8 C 1.38302 * 120.01160 * 179.77255 * 7 6 5 9 9 Br 1.89101 * 119.98485 * 180.27510 * 8 7 6 10 10 C 1.38354 * 120.03324 * 0.50570 * 8 7 6 11 11 C 1.38172 * 120.01401 * 359.74864 * 10 8 7 12 12 C 1.38437 * 120.00840 * 81.74629 * 6 5 4 13 13 F 1.35098 * 120.01528 * 359.97438 * 12 6 5 14 14 S 1.65599 * 120.00319 * 263.57317 * 4 3 2 15 15 O 1.42101 * 106.39943 * 23.54384 * 14 4 3 16 16 O 1.42104 * 106.40253 * 156.45742 * 14 4 3 17 17 C 1.76197 * 107.22293 * 269.99939 * 14 4 3 18 18 H 1.08000 * 119.99485 * 0.02562 * 17 14 4 19 19 C 1.37872 * 120.00079 * 179.97438 * 17 14 4 20 20 N 1.31512 * 120.00157 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99917 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.46969 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47456 * 119.99764 * 21 19 17 24 24 H 1.48500 * 109.46902 * 240.00500 * 21 19 17 25 25 H 1.07999 * 120.00465 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00212 * 359.97438 * 1 2 3 27 27 H 1.08009 * 119.99610 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.47261 * 5.54241 * 3 2 1 29 29 H 1.08999 * 109.47110 * 245.54704 * 3 2 1 30 30 H 1.09003 * 109.46861 * 202.77327 * 5 4 3 31 31 H 1.08999 * 109.47142 * 322.76435 * 5 4 3 32 32 H 1.07997 * 119.99137 * 359.97438 * 7 6 5 33 33 H 1.08001 * 119.99573 * 179.72652 * 10 8 7 34 34 H 1.08000 * 120.00568 * 179.97438 * 11 10 8 35 35 H 0.97000 * 119.99968 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0030 1.3264 1.1238 5 6 4.3181 0.6945 0.9913 6 6 5.2657 1.6454 0.3065 7 6 5.5121 1.5199 -1.0477 8 6 6.3781 2.3955 -1.6772 9 35 6.7088 2.2279 -3.5315 10 6 7.0062 3.3909 -0.9501 11 6 6.7648 3.5142 0.4048 12 6 5.8939 2.6411 1.0348 13 9 5.6573 2.7611 2.3595 14 16 2.5786 2.0650 2.5439 15 8 1.1582 2.0752 2.5820 16 8 3.3790 1.4739 3.5585 17 6 3.0855 3.7485 2.4282 18 1 3.5748 4.1048 1.5337 19 6 2.8565 4.6112 3.4790 20 7 2.2602 4.1775 4.5680 21 14 3.3932 6.3963 3.3559 22 1 4.0367 6.6299 2.0381 23 1 2.2078 7.2802 3.4920 24 1 4.3625 6.6975 4.4398 25 1 -0.5401 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3594 2.1312 0.0993 29 1 2.6136 1.4069 -0.9355 30 1 4.7035 0.4468 1.9804 31 1 4.2258 -0.2159 0.3991 32 1 5.0259 0.7401 -1.6149 33 1 7.6857 4.0715 -1.4414 34 1 7.2555 4.2910 0.9724 35 1 2.0988 4.7845 5.3071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:46 Heat of formation + Delta-G solvation = -79.798828 kcal Electronic energy + Delta-G solvation = -25110.454448 eV Core-core repulsion = 21196.567516 eV Total energy + Delta-G solvation = -3913.886932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 376.988 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.37672 -39.17963 -36.46068 -35.31823 -33.93178 -33.28420 -33.04048 -31.98569 -31.00039 -28.90705 -26.68126 -26.10129 -24.25974 -22.71868 -21.28626 -19.49628 -18.70874 -17.51400 -17.30430 -16.57966 -16.10733 -15.64568 -15.48663 -15.06346 -14.73480 -14.56224 -14.26293 -13.95082 -13.59400 -13.34247 -13.06689 -12.88240 -12.77259 -12.21190 -12.03845 -11.74133 -11.42474 -11.22990 -11.19441 -11.09674 -10.94713 -10.67444 -10.58623 -10.44336 -10.37153 -10.25260 -10.08061 -9.22275 -9.09274 -9.03235 -8.92200 -8.44907 -8.29490 -6.66828 -5.25721 1.00468 1.13641 1.53368 2.19480 2.68169 3.05323 3.13781 3.20135 3.46509 4.07888 4.43037 4.57545 4.64049 4.68007 4.81634 5.04724 5.22353 5.25191 5.41171 5.48772 5.67861 5.74053 5.78514 5.88955 5.99864 6.05413 6.11861 6.13360 6.20423 6.27309 6.42464 6.61500 6.84705 6.91613 7.14212 7.35022 7.51336 7.99494 8.93055 10.27369 Molecular weight = 376.99amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.004367 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.041208 B = 6409.944625 C = 7989.748058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.176 4.176 3 C 0.155 3.845 4 N -1.003 6.003 5 C 0.161 3.839 6 C -0.136 4.136 7 C -0.049 4.049 8 C -0.115 4.115 9 Br -0.057 7.057 10 C -0.063 4.063 11 C -0.157 4.157 12 C 0.148 3.852 13 F -0.097 7.097 14 S 2.707 3.293 15 O -0.999 6.999 16 O -0.997 6.997 17 C -1.006 5.006 18 H 0.098 0.902 19 C 0.138 3.862 20 N -0.847 5.847 21 Si 0.912 3.088 22 H -0.262 1.262 23 H -0.272 1.272 24 H -0.271 1.271 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.011 -4.104 -15.542 18.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.195 4.195 3 C 0.029 3.971 4 N -0.834 5.834 5 C 0.034 3.966 6 C -0.140 4.140 7 C -0.070 4.070 8 C -0.194 4.194 9 Br 0.028 6.972 10 C -0.083 4.083 11 C -0.177 4.177 12 C 0.127 3.873 13 F -0.075 7.075 14 S 2.808 3.192 15 O -0.989 6.989 16 O -0.988 6.988 17 C -1.139 5.139 18 H 0.116 0.884 19 C -0.080 4.080 20 N -0.477 5.477 21 Si 0.737 3.263 22 H -0.186 1.186 23 H -0.197 1.197 24 H -0.196 1.196 25 H 0.112 0.888 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.603 -4.609 -15.278 18.129 hybrid contribution 0.446 1.612 0.271 1.694 sum 9.049 -2.997 -15.007 17.778 Atomic orbital electron populations 1.23847 0.95980 1.01855 0.99482 1.23321 0.96322 0.99018 1.00880 1.20193 0.91302 0.95668 0.89939 1.58203 1.20701 1.72506 1.32016 1.20017 0.81505 0.92943 1.02091 1.20562 1.00100 0.99135 0.94202 1.20831 0.95433 0.97776 0.92961 1.21642 1.04947 1.02024 0.90790 1.96673 1.95519 1.98025 1.06947 1.20879 0.98118 0.96270 0.92994 1.21196 1.00675 1.00752 0.95038 1.17848 0.94984 0.94786 0.79636 1.91783 1.92097 1.94579 1.29029 1.00839 0.73021 0.75557 0.69805 1.93363 1.31685 1.88916 1.84968 1.93351 1.71162 1.79758 1.54498 1.30509 1.54104 1.19329 1.10007 0.88382 1.24647 0.89929 1.00700 0.92685 1.69899 1.34622 1.38070 1.05075 0.86251 0.79125 0.81670 0.79295 1.18624 1.19673 1.19597 0.88839 0.88057 0.87657 0.89364 0.90880 0.87535 0.89764 0.84319 0.84496 0.83888 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 14.32 29.02 0.42 -2.15 16 2 C -0.18 -2.67 9.83 -36.03 -0.35 -3.03 16 3 C 0.15 2.60 5.79 -5.20 -0.03 2.57 16 4 N -1.00 -19.78 2.76 -116.95 -0.32 -20.10 16 5 C 0.16 2.66 5.56 -5.19 -0.03 2.63 16 6 C -0.14 -2.12 5.45 -104.56 -0.57 -2.68 16 7 C -0.05 -0.63 9.41 -39.57 -0.37 -1.00 16 8 C -0.11 -1.40 6.22 -39.52 -0.25 -1.65 16 9 Br -0.06 -0.59 33.70 -68.01 -2.29 -2.89 16 10 C -0.06 -0.76 9.79 -39.56 -0.39 -1.15 16 11 C -0.16 -2.22 10.03 -39.52 -0.40 -2.62 16 12 C 0.15 2.55 6.68 -39.42 -0.26 2.29 16 13 F -0.10 -2.07 13.78 2.25 0.03 -2.04 16 14 S 2.71 71.29 4.59 -107.50 -0.49 70.79 16 15 O -1.00 -28.90 16.96 -57.17 -0.97 -29.87 16 16 O -1.00 -28.64 16.06 -57.17 -0.92 -29.56 16 17 C -1.01 -27.10 7.71 30.60 0.24 -26.86 16 18 H 0.10 2.47 7.34 -52.49 -0.39 2.08 16 19 C 0.14 3.81 5.46 -17.82 -0.10 3.71 16 20 N -0.85 -24.80 13.19 55.43 0.73 -24.07 16 21 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 22 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 26 H 0.10 1.55 7.84 -52.49 -0.41 1.14 16 27 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 28 H 0.09 1.61 7.21 -51.93 -0.37 1.23 16 29 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 30 H 0.11 1.93 6.63 -51.93 -0.34 1.59 16 31 H 0.08 1.06 8.00 -51.93 -0.42 0.65 16 32 H 0.14 1.46 8.05 -52.49 -0.42 1.04 16 33 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.29 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -33.92 341.86 -9.80 -43.72 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -3.60 Total: 3.24 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: -2.09 Total: -29.94 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.41 Total: -44.17 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -1.89 Total: -59.43 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.03 Total: -2.04 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 71.29 SS G_CDS: -0.49 Total: 70.79 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.92 -9.80 -43.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.079 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds