Wall clock time and date at job start Tue Mar 31 2020 07:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50690 * 120.00337 * 2 1 4 4 N 1.46497 * 109.47400 * 125.54280 * 3 2 1 5 5 C 1.46505 * 119.99857 * 83.57644 * 4 3 2 6 6 C 1.50698 * 109.47143 * 82.76960 * 5 4 3 7 7 C 1.38216 * 120.00366 * 261.46530 * 6 5 4 8 8 C 1.38302 * 120.01160 * 179.77255 * 7 6 5 9 9 Br 1.89101 * 119.98485 * 180.27510 * 8 7 6 10 10 C 1.38354 * 120.03324 * 0.50570 * 8 7 6 11 11 C 1.38172 * 120.01401 * 359.74864 * 10 8 7 12 12 C 1.38437 * 120.00840 * 81.74629 * 6 5 4 13 13 F 1.35098 * 120.01528 * 359.97438 * 12 6 5 14 14 S 1.65599 * 120.00319 * 263.57317 * 4 3 2 15 15 O 1.42101 * 106.39943 * 23.54384 * 14 4 3 16 16 O 1.42104 * 106.40253 * 156.45742 * 14 4 3 17 17 C 1.76197 * 107.22293 * 269.99939 * 14 4 3 18 18 H 1.08000 * 119.99485 * 0.02562 * 17 14 4 19 19 C 1.37872 * 120.00079 * 179.97438 * 17 14 4 20 20 N 1.31512 * 120.00157 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99917 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.46969 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47456 * 119.99764 * 21 19 17 24 24 H 1.48500 * 109.46902 * 240.00500 * 21 19 17 25 25 H 1.07999 * 120.00465 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00212 * 359.97438 * 1 2 3 27 27 H 1.08009 * 119.99610 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.47261 * 5.54241 * 3 2 1 29 29 H 1.08999 * 109.47110 * 245.54704 * 3 2 1 30 30 H 1.09003 * 109.46861 * 202.77327 * 5 4 3 31 31 H 1.08999 * 109.47142 * 322.76435 * 5 4 3 32 32 H 1.07997 * 119.99137 * 359.97438 * 7 6 5 33 33 H 1.08001 * 119.99573 * 179.72652 * 10 8 7 34 34 H 1.08000 * 120.00568 * 179.97438 * 11 10 8 35 35 H 0.97000 * 119.99968 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0030 1.3264 1.1238 5 6 4.3181 0.6945 0.9913 6 6 5.2657 1.6454 0.3065 7 6 5.5121 1.5199 -1.0477 8 6 6.3781 2.3955 -1.6772 9 35 6.7088 2.2279 -3.5315 10 6 7.0062 3.3909 -0.9501 11 6 6.7648 3.5142 0.4048 12 6 5.8939 2.6411 1.0348 13 9 5.6573 2.7611 2.3595 14 16 2.5786 2.0650 2.5439 15 8 1.1582 2.0752 2.5820 16 8 3.3790 1.4739 3.5585 17 6 3.0855 3.7485 2.4282 18 1 3.5748 4.1048 1.5337 19 6 2.8565 4.6112 3.4790 20 7 2.2602 4.1775 4.5680 21 14 3.3932 6.3963 3.3559 22 1 4.0367 6.6299 2.0381 23 1 2.2078 7.2802 3.4920 24 1 4.3625 6.6975 4.4398 25 1 -0.5401 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3594 2.1312 0.0993 29 1 2.6136 1.4069 -0.9355 30 1 4.7035 0.4468 1.9804 31 1 4.2258 -0.2159 0.3991 32 1 5.0259 0.7401 -1.6149 33 1 7.6857 4.0715 -1.4414 34 1 7.2555 4.2910 0.9724 35 1 2.0988 4.7845 5.3071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095439645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:45 Heat of formation + Delta-G solvation = -102.379875 kcal Electronic energy + Delta-G solvation = -25111.433635 eV Core-core repulsion = 21196.567516 eV Total energy + Delta-G solvation = -3914.866120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 376.988 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.76684 -40.27617 -37.82801 -37.41660 -36.08355 -35.12371 -34.49536 -32.99531 -32.19922 -29.92494 -28.23434 -27.89412 -25.62251 -23.80300 -22.47119 -20.79701 -20.61933 -19.22618 -18.48996 -18.34523 -17.60922 -17.08540 -16.89405 -16.70610 -16.21297 -15.98254 -15.64037 -15.36506 -15.26900 -14.72539 -14.34874 -14.15300 -13.99406 -13.84836 -13.53452 -13.21179 -13.04725 -12.93018 -12.78285 -12.44447 -12.43749 -12.32421 -12.26599 -12.06331 -12.03177 -11.58961 -11.27421 -11.24189 -10.93963 -10.26623 -10.11165 -9.92881 -9.48175 -8.71322 -7.38861 -0.11670 0.05678 0.37988 0.58172 1.28923 1.29285 1.44270 1.46863 2.19316 2.37456 2.61627 2.94584 3.33981 3.53425 3.70582 3.82745 4.01336 4.03039 4.11102 4.23752 4.29014 4.37498 4.54659 4.66045 4.72566 4.81684 4.85791 4.95682 5.06367 5.08332 5.11444 5.21913 5.32865 5.71814 5.73251 5.89867 5.93145 6.00099 6.83502 8.24703 Molecular weight = 376.99amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.004367 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.041208 B = 6409.944625 C = 7989.748058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.185 4.185 3 C 0.147 3.853 4 N -0.997 5.997 5 C 0.156 3.844 6 C -0.146 4.146 7 C -0.040 4.040 8 C -0.114 4.114 9 Br -0.031 7.031 10 C -0.053 4.053 11 C -0.160 4.160 12 C 0.105 3.895 13 F -0.134 7.134 14 S 2.710 3.290 15 O -1.038 7.038 16 O -1.035 7.035 17 C -1.012 5.012 18 H 0.109 0.891 19 C 0.077 3.923 20 N -0.897 5.897 21 Si 0.975 3.025 22 H -0.247 1.247 23 H -0.260 1.260 24 H -0.261 1.261 25 H 0.119 0.881 26 H 0.087 0.913 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.154 0.846 35 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.372 -3.844 -18.882 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.204 4.204 3 C 0.023 3.977 4 N -0.832 5.832 5 C 0.031 3.969 6 C -0.149 4.149 7 C -0.060 4.060 8 C -0.194 4.194 9 Br 0.054 6.946 10 C -0.073 4.073 11 C -0.180 4.180 12 C 0.085 3.915 13 F -0.112 7.112 14 S 2.812 3.188 15 O -1.028 7.028 16 O -1.025 7.025 17 C -1.146 5.146 18 H 0.127 0.873 19 C -0.135 4.135 20 N -0.529 5.529 21 Si 0.794 3.206 22 H -0.169 1.169 23 H -0.184 1.184 24 H -0.185 1.185 25 H 0.137 0.863 26 H 0.106 0.894 27 H 0.149 0.851 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.099 0.901 31 H 0.148 0.852 32 H 0.185 0.815 33 H 0.184 0.816 34 H 0.171 0.829 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.965 -4.363 -18.632 21.575 hybrid contribution 0.086 1.448 1.125 1.836 sum 10.051 -2.915 -17.507 20.396 Atomic orbital electron populations 1.24064 0.96231 1.02529 0.98833 1.23442 0.96520 0.99131 1.01344 1.20452 0.91053 0.96042 0.90144 1.57628 1.22594 1.72106 1.30865 1.20246 0.79938 0.94806 1.01955 1.20475 1.00332 0.98883 0.95257 1.21068 0.95053 0.98222 0.91696 1.21884 1.03995 1.01357 0.92167 1.96720 1.95347 1.97940 1.04583 1.21214 0.97720 0.96312 0.92028 1.21385 1.00074 1.00441 0.96055 1.18376 0.97451 0.97062 0.78616 1.91687 1.92779 1.95066 1.31659 1.00325 0.71973 0.75693 0.70824 1.93302 1.33831 1.89392 1.86263 1.93293 1.71571 1.80281 1.57340 1.30744 1.53520 1.19938 1.10351 0.87327 1.25811 0.89653 1.05870 0.92160 1.69995 1.36526 1.40116 1.06287 0.85319 0.79343 0.75700 0.80264 1.16942 1.18433 1.18538 0.86281 0.89447 0.85083 0.91656 0.87103 0.90133 0.85173 0.81498 0.81579 0.82860 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.07 14.32 67.78 0.97 -4.10 16 2 C -0.18 -5.29 9.83 25.65 0.25 -5.04 16 3 C 0.15 4.78 5.79 85.63 0.50 5.28 16 4 N -1.00 -39.21 2.76 -523.92 -1.45 -40.65 16 5 C 0.16 5.03 5.56 85.63 0.48 5.50 16 6 C -0.15 -4.34 5.45 -19.82 -0.11 -4.44 16 7 C -0.04 -0.89 9.41 22.28 0.21 -0.68 16 8 C -0.11 -2.39 6.22 22.31 0.14 -2.25 16 9 Br -0.03 -0.53 33.70 -20.37 -0.69 -1.22 16 10 C -0.05 -1.12 9.79 22.28 0.22 -0.90 16 11 C -0.16 -4.31 10.03 22.31 0.22 -4.09 16 12 C 0.11 3.62 6.68 22.37 0.15 3.77 16 13 F -0.13 -5.94 13.78 44.97 0.62 -5.32 16 14 S 2.71 147.81 4.59 -56.49 -0.26 147.55 16 15 O -1.04 -62.55 16.96 -128.00 -2.17 -64.72 16 16 O -1.03 -62.49 16.06 -128.00 -2.06 -64.54 16 17 C -1.01 -55.87 7.71 67.73 0.52 -55.35 16 18 H 0.11 5.55 7.34 -2.91 -0.02 5.53 16 19 C 0.08 4.36 5.46 84.65 0.46 4.82 16 20 N -0.90 -54.51 13.19 21.45 0.28 -54.22 16 21 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 22 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 24 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 25 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 26 H 0.09 2.69 7.84 -2.91 -0.02 2.67 16 27 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.07 2.40 7.21 -2.38 -0.02 2.39 16 29 H 0.11 2.70 8.12 -2.39 -0.02 2.68 16 30 H 0.08 3.03 6.63 -2.39 -0.02 3.01 16 31 H 0.13 2.91 8.00 -2.39 -0.02 2.89 16 32 H 0.17 2.70 8.05 -2.91 -0.02 2.68 16 33 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 34 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 35 H 0.30 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -77.92 341.86 1.44 -76.48 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 1.12 Total: 19.92 kcal Atomic # 6 Polarization: -61.49 SS G_CDS: 4.01 Total: -57.48 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -1.16 Total: -94.88 kcal Atomic # 8 Polarization: -125.03 SS G_CDS: -4.23 Total: -129.26 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.62 Total: -5.32 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 147.81 SS G_CDS: -0.26 Total: 147.55 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -0.69 Total: -1.22 kcal Total: -77.92 1.44 -76.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.903 kcal (2) G-P(sol) polarization free energy of solvation -77.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds