Wall clock time and date at job start Tue Mar 31 2020 05:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00040 * 2 1 4 4 H 1.48500 * 109.47509 * 270.00165 * 3 2 1 5 5 H 1.48498 * 109.46975 * 30.00876 * 3 2 1 6 6 H 1.48507 * 109.46939 * 150.00166 * 3 2 1 7 7 C 1.37879 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99839 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00024 * 180.27254 * 7 2 1 10 10 N 1.46496 * 109.47072 * 179.72510 * 9 7 2 11 11 C 1.46505 * 120.00110 * 95.98656 * 10 9 7 12 12 C 1.52991 * 109.47655 * 92.04640 * 11 10 9 13 13 C 1.52999 * 109.47369 * 180.02562 * 12 11 10 14 14 F 1.39904 * 109.47183 * 59.99800 * 13 12 11 15 15 F 1.39899 * 109.47198 * 180.02562 * 13 12 11 16 16 F 1.39901 * 109.46766 * 299.99805 * 13 12 11 17 17 C 1.34779 * 120.00034 * 275.97820 * 10 9 7 18 18 O 1.21277 * 119.99891 * 184.98659 * 17 10 9 19 19 C 1.50700 * 119.99693 * 4.99163 * 17 10 9 20 20 H 1.08994 * 109.69526 * 41.99259 * 19 17 10 21 21 C 1.53405 * 109.69389 * 281.43473 * 19 17 10 22 22 O 1.42830 * 108.35944 * 175.59486 * 21 19 17 23 23 C 1.35901 * 117.87207 * 49.15677 * 22 21 19 24 24 C 1.39132 * 118.46061 * 162.93848 * 23 22 21 25 25 C 1.37963 * 120.24837 * 179.77261 * 24 23 22 26 26 C 1.38475 * 119.93404 * 359.97438 * 25 24 23 27 27 F 1.35099 * 120.03808 * 180.02562 * 26 25 24 28 28 C 1.38292 * 119.93119 * 0.06604 * 26 25 24 29 29 C 1.38353 * 121.80037 * 342.84552 * 23 22 21 30 30 C 1.50769 * 121.41146 * 0.34811 * 29 23 22 31 31 H 0.97006 * 120.00089 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47042 * 299.72626 * 9 7 2 33 33 H 1.09002 * 109.47072 * 59.72396 * 9 7 2 34 34 H 1.08998 * 109.46752 * 212.05192 * 11 10 9 35 35 H 1.09005 * 109.46447 * 332.04034 * 11 10 9 36 36 H 1.09003 * 109.47049 * 299.99949 * 12 11 10 37 37 H 1.09003 * 109.47119 * 59.99654 * 12 11 10 38 38 H 1.09004 * 109.68963 * 295.27018 * 21 19 17 39 39 H 1.08993 * 109.68901 * 55.84120 * 21 19 17 40 40 H 1.07993 * 119.87451 * 359.79371 * 24 23 22 41 41 H 1.08004 * 120.03591 * 180.02562 * 25 24 23 42 42 H 1.07993 * 119.85419 * 180.02562 * 28 26 25 43 43 H 1.09006 * 109.43961 * 222.25242 * 30 29 23 44 44 H 1.09002 * 109.43715 * 102.39336 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0014 9 6 3.5114 -1.1941 0.0057 10 7 3.9997 -2.5753 0.0104 11 6 4.3738 -3.2243 -1.2486 12 6 5.8673 -3.0151 -1.5063 13 6 6.2578 -3.6924 -2.8214 14 9 5.5207 -3.1331 -3.8708 15 9 7.6236 -3.5015 -3.0567 16 9 5.9863 -5.0623 -2.7390 17 6 4.1049 -3.2489 1.1731 18 8 4.5934 -4.3588 1.1887 19 6 3.6155 -2.6228 2.4535 20 1 2.6638 -2.1218 2.2771 21 6 4.6481 -1.6077 2.9603 22 8 4.1120 -0.9586 4.1141 23 6 3.5867 -1.7385 5.0953 24 6 3.3944 -1.1798 6.3549 25 6 2.8592 -1.9368 7.3766 26 6 2.5112 -3.2576 7.1488 27 9 1.9864 -4.0006 8.1477 28 6 2.7020 -3.8156 5.8979 29 6 3.2415 -3.0593 4.8704 30 6 3.4389 -3.7044 3.5220 31 1 -0.4850 0.8401 0.0004 32 1 3.8784 -0.6820 -0.8838 33 1 3.8711 -0.6785 0.8961 34 1 4.1622 -4.2916 -1.1840 35 1 3.7994 -2.7890 -2.0664 36 1 6.0788 -1.9477 -1.5709 37 1 6.4416 -3.4504 -0.6884 38 1 5.5708 -2.1238 3.2255 39 1 4.8495 -0.8700 2.1837 40 1 3.6648 -0.1496 6.5333 41 1 2.7110 -1.4994 8.3530 42 1 2.4298 -4.8456 5.7215 43 1 2.5680 -4.3140 3.2805 44 1 4.3267 -4.3363 3.5487 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095445447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:00 Heat of formation + Delta-G solvation = -252.510612 kcal Electronic energy + Delta-G solvation = -35125.313750 eV Core-core repulsion = 29735.166065 eV Total energy + Delta-G solvation = -5390.147685 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.124 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.07519 -48.82259 -47.59004 -47.53067 -40.93172 -39.40666 -37.25106 -35.86788 -34.25349 -33.12998 -32.08451 -30.64015 -29.90975 -28.17857 -26.14741 -25.58338 -24.09173 -22.82182 -22.74125 -22.30375 -20.40602 -18.83105 -18.51693 -18.20170 -17.95213 -17.54000 -17.32178 -17.04108 -16.91600 -16.56815 -15.66028 -15.50713 -15.17668 -14.79906 -14.70740 -14.52666 -14.41579 -14.23033 -14.15649 -13.99754 -13.75810 -13.70078 -13.63240 -13.46497 -13.37516 -13.18075 -13.09377 -12.94022 -12.66702 -12.42777 -12.34707 -12.00560 -11.81560 -11.34294 -11.20631 -11.06039 -11.01027 -10.76044 -10.65824 -10.54969 -10.38353 -9.79111 -9.44827 -8.96765 -8.85036 -8.17021 -8.04434 -6.34858 -4.39111 1.11102 1.19574 2.70965 2.87454 3.09084 3.14311 3.18328 3.22154 3.39644 3.55576 3.95535 4.08840 4.09231 4.14685 4.25615 4.56299 4.62600 4.73257 4.88731 4.90310 4.95629 5.01521 5.05409 5.12549 5.27100 5.33100 5.40690 5.48826 5.61289 5.67613 5.77108 5.81469 5.98462 6.03548 6.08369 6.11381 6.14351 6.30134 6.34796 6.45054 6.68363 6.95081 7.24543 7.39566 7.76238 8.18462 8.50613 8.69617 9.22468 10.77102 Molecular weight = 375.12amu Principal moments of inertia in cm(-1) A = 0.008643 B = 0.003119 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.979355 B = 8976.025953 C =11100.936159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.082 3.918 3 Si 0.869 3.131 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.080 0.920 9 C 0.200 3.800 10 N -0.587 5.587 11 C 0.119 3.881 12 C -0.185 4.185 13 C 0.457 3.543 14 F -0.182 7.182 15 F -0.188 7.188 16 F -0.182 7.182 17 C 0.532 3.468 18 O -0.557 6.557 19 C -0.150 4.150 20 H 0.138 0.862 21 C 0.073 3.927 22 O -0.303 6.303 23 C 0.127 3.873 24 C -0.121 4.121 25 C -0.124 4.124 26 C 0.061 3.939 27 F -0.144 7.144 28 C -0.116 4.116 29 C -0.121 4.121 30 C -0.062 4.062 31 H 0.269 0.731 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.089 0.911 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.646 -3.040 5.702 12.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.124 4.124 3 Si 0.695 3.305 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.588 4.588 8 H 0.098 0.902 9 C 0.080 3.920 10 N -0.316 5.316 11 C -0.005 4.005 12 C -0.225 4.225 13 C 0.402 3.598 14 F -0.164 7.164 15 F -0.170 7.170 16 F -0.163 7.163 17 C 0.320 3.680 18 O -0.436 6.436 19 C -0.171 4.171 20 H 0.156 0.844 21 C -0.002 4.002 22 O -0.216 6.216 23 C 0.081 3.919 24 C -0.139 4.139 25 C -0.143 4.143 26 C 0.041 3.959 27 F -0.123 7.123 28 C -0.135 4.135 29 C -0.122 4.122 30 C -0.099 4.099 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.086 0.914 39 H 0.136 0.864 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.108 0.892 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.715 -3.310 5.691 12.576 hybrid contribution 0.113 0.633 -0.302 0.710 sum 10.828 -2.677 5.389 12.388 Atomic orbital electron populations 1.69871 1.06272 1.27485 1.48300 1.24859 0.94724 0.98915 0.93855 0.86966 0.80571 0.84065 0.78903 1.19828 1.20650 1.18707 1.21270 0.88622 0.95182 1.53706 0.90169 1.20079 0.96580 0.77331 0.98019 1.47869 1.62995 1.15990 1.04782 1.21237 0.90795 1.00276 0.88172 1.23346 1.02082 1.03673 0.93362 1.20496 0.74364 0.77325 0.87568 1.93198 1.77016 1.85009 1.61152 1.93172 1.33254 1.95004 1.95537 1.93194 1.93494 1.33147 1.96511 1.20051 0.77743 0.85152 0.85028 1.90636 1.45884 1.20235 1.86879 1.22053 1.03771 0.98055 0.93196 0.84414 1.23055 0.94452 0.96430 0.86283 1.86063 1.73454 1.34472 1.27588 1.18768 0.95020 0.89636 0.88487 1.20407 1.02835 1.01114 0.89581 1.20850 1.00779 0.92428 1.00223 1.17458 1.02449 0.90253 0.85707 1.91472 1.84571 1.76541 1.59712 1.20845 1.00699 1.00941 0.91037 1.19716 1.02345 0.93536 0.96598 1.20373 1.04352 0.96852 0.88360 0.92118 0.94671 0.94352 0.89337 0.88614 0.87182 0.87033 0.91450 0.86376 0.84198 0.84341 0.84479 0.89230 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.37 13.96 55.43 0.77 -23.60 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 18.55 27.47 -169.99 -4.67 13.88 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.26 -5.15 6.54 56.52 0.37 -4.78 16 7 C -0.55 -13.13 8.67 -34.44 -0.30 -13.43 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 C 0.20 3.82 3.91 -5.20 -0.02 3.80 16 10 N -0.59 -10.11 2.47 -175.06 -0.43 -10.54 16 11 C 0.12 1.81 5.08 -4.04 -0.02 1.79 16 12 C -0.19 -2.28 5.58 -26.74 -0.15 -2.43 16 13 C 0.46 5.71 3.16 37.16 0.12 5.83 16 14 F -0.18 -2.41 16.80 2.25 0.04 -2.37 16 15 F -0.19 -2.33 17.32 2.25 0.04 -2.29 16 16 F -0.18 -2.46 16.80 2.25 0.04 -2.43 16 17 C 0.53 9.22 6.82 -10.98 -0.07 9.15 16 18 O -0.56 -10.38 15.43 5.56 0.09 -10.30 16 19 C -0.15 -2.42 1.93 -91.53 -0.18 -2.60 16 20 H 0.14 2.62 6.57 -51.93 -0.34 2.28 16 21 C 0.07 1.05 6.04 37.37 0.23 1.28 16 22 O -0.30 -4.65 10.27 -19.43 -0.20 -4.85 16 23 C 0.13 1.84 6.47 -39.21 -0.25 1.58 16 24 C -0.12 -1.50 9.93 -39.35 -0.39 -1.89 16 25 C -0.12 -1.43 10.02 -39.59 -0.40 -1.83 16 26 C 0.06 0.78 7.30 -39.47 -0.29 0.49 16 27 F -0.14 -1.88 17.27 2.25 0.04 -1.84 16 28 C -0.12 -1.52 9.65 -39.46 -0.38 -1.90 16 29 C -0.12 -1.72 5.75 -104.44 -0.60 -2.32 16 30 C -0.06 -0.91 4.86 -27.81 -0.14 -1.04 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.04 0.64 7.46 -51.93 -0.39 0.26 16 33 H 0.04 0.71 3.79 -51.93 -0.20 0.51 16 34 H 0.09 1.40 7.22 -51.93 -0.37 1.02 16 35 H 0.10 1.45 7.72 -51.93 -0.40 1.05 16 36 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.12 1.66 5.76 -51.93 -0.30 1.36 16 40 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 41 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 42 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.09 1.34 7.46 -51.93 -0.39 0.95 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -27.77 378.26 -6.47 -34.23 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -4.94 Total: 5.96 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.94 Total: -1.56 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.34 Total: -34.14 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.11 Total: -15.15 kcal Atomic # 9 Polarization: -9.09 SS G_CDS: 0.15 Total: -8.93 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.67 Total: 13.88 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -27.77 -6.47 -34.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095445447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.276 kcal (2) G-P(sol) polarization free energy of solvation -27.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds