Wall clock time and date at job start Tue Mar 31 2020 05:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00040 * 2 1 4 4 H 1.48500 * 109.47509 * 270.00165 * 3 2 1 5 5 H 1.48498 * 109.46975 * 30.00876 * 3 2 1 6 6 H 1.48507 * 109.46939 * 150.00166 * 3 2 1 7 7 C 1.37879 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99839 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00024 * 180.27254 * 7 2 1 10 10 N 1.46496 * 109.47072 * 179.72510 * 9 7 2 11 11 C 1.46505 * 120.00110 * 95.98656 * 10 9 7 12 12 C 1.52991 * 109.47655 * 92.04640 * 11 10 9 13 13 C 1.52999 * 109.47369 * 180.02562 * 12 11 10 14 14 F 1.39904 * 109.47183 * 59.99800 * 13 12 11 15 15 F 1.39899 * 109.47198 * 180.02562 * 13 12 11 16 16 F 1.39901 * 109.46766 * 299.99805 * 13 12 11 17 17 C 1.34779 * 120.00034 * 275.97820 * 10 9 7 18 18 O 1.21277 * 119.99891 * 184.98659 * 17 10 9 19 19 C 1.50700 * 119.99693 * 4.99163 * 17 10 9 20 20 H 1.08994 * 109.69526 * 41.99259 * 19 17 10 21 21 C 1.53405 * 109.69389 * 281.43473 * 19 17 10 22 22 O 1.42830 * 108.35944 * 175.59486 * 21 19 17 23 23 C 1.35901 * 117.87207 * 49.15677 * 22 21 19 24 24 C 1.39132 * 118.46061 * 162.93848 * 23 22 21 25 25 C 1.37963 * 120.24837 * 179.77261 * 24 23 22 26 26 C 1.38475 * 119.93404 * 359.97438 * 25 24 23 27 27 F 1.35099 * 120.03808 * 180.02562 * 26 25 24 28 28 C 1.38292 * 119.93119 * 0.06604 * 26 25 24 29 29 C 1.38353 * 121.80037 * 342.84552 * 23 22 21 30 30 C 1.50769 * 121.41146 * 0.34811 * 29 23 22 31 31 H 0.97006 * 120.00089 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47042 * 299.72626 * 9 7 2 33 33 H 1.09002 * 109.47072 * 59.72396 * 9 7 2 34 34 H 1.08998 * 109.46752 * 212.05192 * 11 10 9 35 35 H 1.09005 * 109.46447 * 332.04034 * 11 10 9 36 36 H 1.09003 * 109.47049 * 299.99949 * 12 11 10 37 37 H 1.09003 * 109.47119 * 59.99654 * 12 11 10 38 38 H 1.09004 * 109.68963 * 295.27018 * 21 19 17 39 39 H 1.08993 * 109.68901 * 55.84120 * 21 19 17 40 40 H 1.07993 * 119.87451 * 359.79371 * 24 23 22 41 41 H 1.08004 * 120.03591 * 180.02562 * 25 24 23 42 42 H 1.07993 * 119.85419 * 180.02562 * 28 26 25 43 43 H 1.09006 * 109.43961 * 222.25242 * 30 29 23 44 44 H 1.09002 * 109.43715 * 102.39336 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0014 9 6 3.5114 -1.1941 0.0057 10 7 3.9997 -2.5753 0.0104 11 6 4.3738 -3.2243 -1.2486 12 6 5.8673 -3.0151 -1.5063 13 6 6.2578 -3.6924 -2.8214 14 9 5.5207 -3.1331 -3.8708 15 9 7.6236 -3.5015 -3.0567 16 9 5.9863 -5.0623 -2.7390 17 6 4.1049 -3.2489 1.1731 18 8 4.5934 -4.3588 1.1887 19 6 3.6155 -2.6228 2.4535 20 1 2.6638 -2.1218 2.2771 21 6 4.6481 -1.6077 2.9603 22 8 4.1120 -0.9586 4.1141 23 6 3.5867 -1.7385 5.0953 24 6 3.3944 -1.1798 6.3549 25 6 2.8592 -1.9368 7.3766 26 6 2.5112 -3.2576 7.1488 27 9 1.9864 -4.0006 8.1477 28 6 2.7020 -3.8156 5.8979 29 6 3.2415 -3.0593 4.8704 30 6 3.4389 -3.7044 3.5220 31 1 -0.4850 0.8401 0.0004 32 1 3.8784 -0.6820 -0.8838 33 1 3.8711 -0.6785 0.8961 34 1 4.1622 -4.2916 -1.1840 35 1 3.7994 -2.7890 -2.0664 36 1 6.0788 -1.9477 -1.5709 37 1 6.4416 -3.4504 -0.6884 38 1 5.5708 -2.1238 3.2255 39 1 4.8495 -0.8700 2.1837 40 1 3.6648 -0.1496 6.5333 41 1 2.7110 -1.4994 8.3530 42 1 2.4298 -4.8456 5.7215 43 1 2.5680 -4.3140 3.2805 44 1 4.3267 -4.3363 3.5487 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095445447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:59 Heat of formation + Delta-G solvation = -266.165770 kcal Electronic energy + Delta-G solvation = -35125.905882 eV Core-core repulsion = 29735.166065 eV Total energy + Delta-G solvation = -5390.739817 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.124 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -51.10001 -49.83593 -48.59952 -48.57683 -42.10765 -40.69676 -38.30893 -37.27254 -35.50384 -34.73963 -33.47560 -31.73703 -30.94170 -29.84197 -27.31722 -26.71664 -25.34678 -24.34180 -23.83504 -23.38535 -21.56258 -20.08601 -19.55012 -19.34267 -19.22942 -18.88451 -18.54485 -18.34664 -18.06684 -17.76684 -16.91456 -16.63429 -16.44078 -16.03289 -15.93699 -15.77961 -15.50157 -15.42277 -15.30630 -15.03130 -14.92430 -14.78063 -14.73183 -14.65383 -14.54936 -14.41920 -14.19950 -14.16501 -14.02547 -13.67844 -13.59777 -13.37708 -13.04668 -12.79717 -12.51111 -12.32860 -12.20699 -12.13767 -11.95358 -11.76976 -11.70433 -11.66648 -10.86654 -10.73724 -9.97189 -9.64508 -9.10044 -8.28411 -6.36217 0.11808 0.16805 1.42475 1.44283 1.47626 1.51861 1.64496 2.06549 2.24299 2.36117 2.52160 2.91349 3.02509 3.06556 3.08664 3.21434 3.37971 3.55934 3.58744 3.77507 3.80551 3.93106 3.97303 4.08697 4.15939 4.27056 4.34262 4.35901 4.46529 4.55988 4.63452 4.65608 4.77404 4.82390 4.89819 4.96894 5.02719 5.09553 5.13660 5.27056 5.43949 5.51649 5.69400 6.13266 6.30897 6.44621 6.70173 7.09780 7.29939 8.87413 Molecular weight = 375.12amu Principal moments of inertia in cm(-1) A = 0.008643 B = 0.003119 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.979355 B = 8976.025953 C =11100.936159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.226 1.226 7 C -0.540 4.540 8 H 0.032 0.968 9 C 0.207 3.793 10 N -0.589 5.589 11 C 0.115 3.885 12 C -0.173 4.173 13 C 0.462 3.538 14 F -0.186 7.186 15 F -0.184 7.184 16 F -0.190 7.190 17 C 0.532 3.468 18 O -0.570 6.570 19 C -0.146 4.146 20 H 0.105 0.895 21 C 0.076 3.924 22 O -0.312 6.312 23 C 0.106 3.894 24 C -0.120 4.120 25 C -0.114 4.114 26 C 0.052 3.948 27 F -0.146 7.146 28 C -0.122 4.122 29 C -0.134 4.134 30 C -0.056 4.056 31 H 0.267 0.733 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.162 0.838 41 H 0.169 0.831 42 H 0.147 0.853 43 H 0.080 0.920 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.144 -1.645 6.672 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.177 4.177 3 Si 0.754 3.246 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.149 1.149 7 C -0.579 4.579 8 H 0.050 0.950 9 C 0.086 3.914 10 N -0.318 5.318 11 C -0.009 4.009 12 C -0.212 4.212 13 C 0.408 3.592 14 F -0.168 7.168 15 F -0.166 7.166 16 F -0.171 7.171 17 C 0.321 3.679 18 O -0.451 6.451 19 C -0.168 4.168 20 H 0.123 0.877 21 C 0.001 3.999 22 O -0.226 6.226 23 C 0.060 3.940 24 C -0.138 4.138 25 C -0.132 4.132 26 C 0.033 3.967 27 F -0.125 7.125 28 C -0.141 4.141 29 C -0.135 4.135 30 C -0.093 4.093 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.150 0.850 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.143 0.857 40 H 0.180 0.820 41 H 0.187 0.813 42 H 0.165 0.835 43 H 0.098 0.902 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.248 -1.942 6.654 14.952 hybrid contribution -0.747 0.059 -0.578 0.946 sum 12.502 -1.883 6.076 14.027 Atomic orbital electron populations 1.70047 1.08534 1.28297 1.51135 1.25751 0.95335 1.03004 0.93641 0.85963 0.80475 0.78679 0.79528 1.18918 1.21795 1.14893 1.21454 0.91262 0.93131 1.52007 0.94998 1.19950 0.93180 0.78685 0.99605 1.47842 1.62875 1.15545 1.05520 1.21299 0.92969 0.99422 0.87180 1.23223 0.99600 1.05096 0.93302 1.20456 0.74417 0.76903 0.87469 1.93194 1.77166 1.85014 1.61406 1.93181 1.32923 1.94945 1.95508 1.93184 1.93568 1.33859 1.96532 1.20234 0.77354 0.84921 0.85391 1.90625 1.46661 1.20681 1.87122 1.21948 1.02765 0.98820 0.93238 0.87696 1.23102 0.94346 0.96101 0.86370 1.86029 1.73823 1.34904 1.27843 1.19077 0.95878 0.89817 0.89185 1.20705 1.02153 1.02157 0.88780 1.21180 0.99086 0.91667 1.01310 1.17632 1.02628 0.90908 0.85538 1.91470 1.84624 1.76702 1.59668 1.20976 1.00500 1.01501 0.91115 1.19691 1.03515 0.93913 0.96422 1.20280 1.04105 0.96398 0.88545 0.92417 0.92480 0.92588 0.90463 0.88864 0.84992 0.86518 0.89451 0.85723 0.82044 0.81331 0.83527 0.90172 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.91 13.96 21.45 0.30 -53.61 16 2 C 0.02 1.13 5.47 84.66 0.46 1.59 16 3 Si 0.93 37.16 27.47 68.60 1.88 39.05 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 5 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.23 -7.66 6.54 99.48 0.65 -7.01 16 7 C -0.54 -26.27 8.67 25.60 0.22 -26.05 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 C 0.21 7.58 3.91 85.63 0.34 7.91 16 10 N -0.59 -19.80 2.47 -826.16 -2.04 -21.85 16 11 C 0.11 3.38 5.08 86.38 0.44 3.82 16 12 C -0.17 -3.88 5.58 30.59 0.17 -3.71 16 13 C 0.46 10.74 3.16 71.98 0.23 10.97 16 14 F -0.19 -4.63 16.80 44.97 0.76 -3.88 16 15 F -0.18 -4.16 17.32 44.97 0.78 -3.38 16 16 F -0.19 -4.95 16.80 44.97 0.76 -4.20 16 17 C 0.53 18.27 6.82 87.66 0.60 18.87 16 18 O -0.57 -21.07 15.43 -3.02 -0.05 -21.11 16 19 C -0.15 -4.73 1.93 -11.38 -0.02 -4.75 16 20 H 0.10 4.13 6.57 -2.39 -0.02 4.11 16 21 C 0.08 2.06 6.04 72.12 0.44 2.49 16 22 O -0.31 -9.09 10.27 -92.43 -0.95 -10.04 16 23 C 0.11 2.93 6.47 22.51 0.15 3.08 16 24 C -0.12 -2.70 9.93 22.42 0.22 -2.47 16 25 C -0.11 -2.35 10.02 22.26 0.22 -2.12 16 26 C 0.05 1.26 7.30 22.34 0.16 1.42 16 27 F -0.15 -3.58 17.27 44.97 0.78 -2.80 16 28 C -0.12 -3.11 9.65 22.35 0.22 -2.89 16 29 C -0.13 -3.76 5.75 -19.75 -0.11 -3.87 16 30 C -0.06 -1.65 4.86 29.89 0.15 -1.51 16 31 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 32 H 0.06 1.90 7.46 -2.39 -0.02 1.88 16 33 H 0.06 1.91 3.79 -2.39 -0.01 1.90 16 34 H 0.08 2.44 7.22 -2.39 -0.02 2.43 16 35 H 0.09 2.77 7.72 -2.38 -0.02 2.75 16 36 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.13 3.15 5.76 -2.39 -0.01 3.14 16 40 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 43 H 0.08 2.44 8.14 -2.38 -0.02 2.43 16 44 H 0.10 2.76 7.46 -2.39 -0.02 2.74 16 Total: -1.00 -61.74 378.26 7.09 -54.65 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 1.01 Total: 24.40 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 3.87 Total: 2.77 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -1.75 Total: -75.46 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -1.00 Total: -31.15 kcal Atomic # 9 Polarization: -17.33 SS G_CDS: 3.07 Total: -14.26 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 1.88 Total: 39.05 kcal Total: -61.74 7.09 -54.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095445447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.514 kcal (2) G-P(sol) polarization free energy of solvation -61.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds