Wall clock time and date at job start Tue Mar 31 2020 05:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99678 * 2 1 4 4 H 1.48507 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47171 * 299.99809 * 3 2 1 6 6 H 1.48496 * 109.47460 * 59.99958 * 3 2 1 7 7 C 1.37876 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99986 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99916 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46803 * 179.97438 * 9 7 2 11 11 C 1.46491 * 120.00246 * 90.00068 * 10 9 7 12 12 C 1.53003 * 109.47089 * 264.47517 * 11 10 9 13 13 C 1.53003 * 109.47043 * 180.02562 * 12 11 10 14 14 F 1.39902 * 109.47224 * 59.99925 * 13 12 11 15 15 F 1.39901 * 109.46981 * 180.02562 * 13 12 11 16 16 F 1.39904 * 109.47243 * 299.99770 * 13 12 11 17 17 C 1.34780 * 119.99832 * 269.99495 * 10 9 7 18 18 O 1.21284 * 119.99851 * 5.16485 * 17 10 9 19 19 C 1.50703 * 120.00071 * 185.16626 * 17 10 9 20 20 H 1.08998 * 109.69118 * 333.87141 * 19 17 10 21 21 C 1.53401 * 109.69598 * 94.46724 * 19 17 10 22 22 O 1.42833 * 108.35768 * 184.44927 * 21 19 17 23 23 C 1.35897 * 117.84332 * 310.77501 * 22 21 19 24 24 C 1.39129 * 118.46323 * 197.08980 * 23 22 21 25 25 C 1.37962 * 120.25317 * 180.22849 * 24 23 22 26 26 C 1.38480 * 119.93176 * 0.02562 * 25 24 23 27 27 F 1.35097 * 120.04130 * 179.91124 * 26 25 24 28 28 C 1.38293 * 119.92457 * 359.93122 * 26 25 24 29 29 C 1.38357 * 121.79807 * 17.18873 * 23 22 21 30 30 C 1.50770 * 121.41112 * 359.64401 * 29 23 22 31 31 H 0.97000 * 120.00213 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.47472 * 60.00092 * 9 7 2 33 33 H 1.08997 * 109.47126 * 299.99211 * 9 7 2 34 34 H 1.09001 * 109.47312 * 144.47397 * 11 10 9 35 35 H 1.09007 * 109.47076 * 24.47524 * 11 10 9 36 36 H 1.08997 * 109.47178 * 299.99957 * 12 11 10 37 37 H 1.08995 * 109.46811 * 60.00403 * 12 11 10 38 38 H 1.09003 * 109.68952 * 304.16205 * 21 19 17 39 39 H 1.08995 * 109.68970 * 64.73032 * 21 19 17 40 40 H 1.08008 * 119.87080 * 0.24840 * 24 23 22 41 41 H 1.08003 * 120.03898 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.84809 * 180.02562 * 28 26 25 43 43 H 1.08996 * 109.43859 * 257.61161 * 30 29 23 44 44 H 1.09002 * 109.43537 * 137.75142 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6792 -4.1693 1.2691 12 6 4.0144 -3.5214 1.6414 13 6 4.5119 -4.1034 2.9661 14 9 4.6852 -5.4852 2.8326 15 9 5.7324 -3.5106 3.3067 16 9 3.5726 -3.8461 3.9705 17 6 2.6410 -4.1248 -1.1667 18 8 2.3211 -3.6053 -2.2149 19 6 3.5281 -5.3431 -1.1694 20 1 4.0768 -5.4000 -0.2293 21 6 2.6735 -6.6045 -1.3474 22 8 3.5271 -7.7448 -1.2417 23 6 4.6699 -7.7526 -1.9771 24 6 5.3226 -8.9651 -2.1753 25 6 6.4881 -9.0149 -2.9119 26 6 7.0116 -7.8541 -3.4561 27 9 8.1537 -7.8999 -4.1762 28 6 6.3642 -6.6477 -3.2612 29 6 5.1926 -6.5943 -2.5242 30 6 4.5135 -5.2611 -2.3378 31 1 -0.4850 0.8400 -0.0004 32 1 0.6248 -2.5571 -0.8896 33 1 0.6242 -2.5567 0.8903 34 1 2.8141 -5.2460 1.1656 35 1 1.9472 -3.9685 2.0515 36 1 4.7463 -3.7223 0.8591 37 1 3.8793 -2.4449 1.7450 38 1 1.9104 -6.6438 -0.5701 39 1 2.1987 -6.5910 -2.3284 40 1 4.9151 -9.8710 -1.7512 41 1 6.9917 -9.9581 -3.0640 42 1 6.7734 -5.7432 -3.6865 43 1 3.9753 -4.9978 -3.2484 44 1 5.2632 -4.4985 -2.1271 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095445448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:03 Heat of formation + Delta-G solvation = -255.186958 kcal Electronic energy + Delta-G solvation = -35439.285631 eV Core-core repulsion = 30049.021891 eV Total energy + Delta-G solvation = -5390.263740 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.124 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.03920 -48.99020 -47.54758 -47.50004 -41.11184 -39.32345 -37.44636 -35.88903 -34.36316 -33.00612 -31.57171 -31.05961 -30.11936 -27.70962 -25.97696 -25.54252 -24.63751 -23.04374 -22.74906 -22.31696 -20.54104 -18.92881 -18.51064 -18.21067 -18.11091 -17.55978 -17.37178 -17.12332 -16.55571 -16.41775 -15.84309 -15.60697 -15.33934 -14.85912 -14.68895 -14.57569 -14.45412 -14.31254 -14.04058 -13.95655 -13.79442 -13.69609 -13.67194 -13.56433 -13.47089 -13.27966 -13.15858 -13.06832 -12.54145 -12.44557 -12.23422 -11.82908 -11.50428 -11.43201 -11.23747 -11.22615 -10.97569 -10.93074 -10.77388 -10.69290 -10.26295 -9.78740 -9.26156 -9.12469 -8.56666 -8.26690 -8.03209 -6.18252 -4.23747 0.90760 0.98664 2.74908 2.91574 3.05622 3.21697 3.30106 3.30844 3.33247 3.51541 3.93894 4.06868 4.12410 4.14698 4.32138 4.36652 4.44422 4.55785 4.61943 4.76805 4.86916 4.91626 5.04242 5.08349 5.12468 5.17628 5.27994 5.33902 5.37576 5.43749 5.60977 5.71516 5.75050 5.89456 5.90583 5.95551 5.99464 6.11370 6.47734 6.78436 7.15411 7.20344 7.27789 7.76084 8.03822 8.06701 8.64401 8.81812 9.42234 10.89971 Molecular weight = 375.12amu Principal moments of inertia in cm(-1) A = 0.008788 B = 0.003112 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.575843 B = 8993.882046 C =10382.220763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.244 3.756 10 N -0.592 5.592 11 C 0.113 3.887 12 C -0.191 4.191 13 C 0.455 3.545 14 F -0.187 7.187 15 F -0.186 7.186 16 F -0.181 7.181 17 C 0.516 3.484 18 O -0.521 6.521 19 C -0.155 4.155 20 H 0.103 0.897 21 C 0.077 3.923 22 O -0.307 6.307 23 C 0.122 3.878 24 C -0.119 4.119 25 C -0.124 4.124 26 C 0.064 3.936 27 F -0.142 7.142 28 C -0.117 4.117 29 C -0.122 4.122 30 C -0.067 4.067 31 H 0.264 0.736 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.102 0.898 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.917 -16.538 0.652 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.126 3.874 10 N -0.323 5.323 11 C -0.012 4.012 12 C -0.230 4.230 13 C 0.400 3.600 14 F -0.169 7.169 15 F -0.168 7.168 16 F -0.163 7.163 17 C 0.301 3.699 18 O -0.397 6.397 19 C -0.177 4.177 20 H 0.121 0.879 21 C 0.001 3.999 22 O -0.220 6.220 23 C 0.077 3.923 24 C -0.138 4.138 25 C -0.143 4.143 26 C 0.045 3.955 27 F -0.121 7.121 28 C -0.136 4.136 29 C -0.123 4.123 30 C -0.104 4.104 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.149 0.851 38 H 0.133 0.867 39 H 0.096 0.904 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.120 0.880 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.514 -16.265 0.218 18.844 hybrid contribution 0.907 1.224 0.165 1.532 sum 10.421 -15.040 0.383 18.302 Atomic orbital electron populations 1.69921 1.06000 1.27138 1.49892 1.24919 0.94867 0.99257 0.94835 0.86477 0.79994 0.83442 0.77736 1.19764 1.20807 1.20878 1.21396 0.93286 0.90480 1.51741 0.92299 1.19432 0.87122 0.82052 0.98796 1.48224 1.45211 1.35559 1.03283 1.21382 0.93996 0.96989 0.88844 1.23542 1.01048 1.06145 0.92261 1.20627 0.75341 0.75915 0.88127 1.93173 1.95422 1.32180 1.96080 1.93180 1.46168 1.83774 1.93670 1.93195 1.65083 1.93792 1.64199 1.19856 0.81177 0.84427 0.84418 1.90714 1.56980 1.61055 1.30957 1.22136 0.98186 0.95663 1.01673 0.87900 1.22893 0.90868 0.81891 1.04235 1.86044 1.30668 1.42557 1.62736 1.18735 0.87526 0.92990 0.93069 1.20416 0.95915 0.96400 1.01048 1.20885 0.96657 0.97758 0.98980 1.17482 0.85389 0.94701 0.97940 1.91486 1.47540 1.97256 1.75835 1.20882 0.95306 0.97396 1.00000 1.19712 0.96593 0.94934 1.01031 1.20430 0.97630 0.93149 0.99187 0.92602 0.93587 0.94537 0.90467 0.88578 0.87790 0.85138 0.86660 0.90439 0.84129 0.84225 0.84344 0.88022 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.94 13.29 55.43 0.74 -24.20 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -13.59 9.21 -34.44 -0.32 -13.91 16 8 H 0.06 1.49 7.42 -52.49 -0.39 1.10 16 9 C 0.24 5.66 5.16 -5.19 -0.03 5.64 16 10 N -0.59 -10.59 2.47 -175.06 -0.43 -11.02 16 11 C 0.11 1.55 4.82 -4.04 -0.02 1.53 16 12 C -0.19 -2.50 5.33 -26.73 -0.14 -2.64 16 13 C 0.45 5.69 3.16 37.16 0.12 5.81 16 14 F -0.19 -2.27 16.80 2.25 0.04 -2.23 16 15 F -0.19 -2.47 17.32 2.25 0.04 -2.43 16 16 F -0.18 -2.43 16.80 2.25 0.04 -2.39 16 17 C 0.52 9.03 6.66 -10.98 -0.07 8.95 16 18 O -0.52 -11.40 15.64 5.55 0.09 -11.31 16 19 C -0.15 -2.01 1.97 -91.53 -0.18 -2.19 16 20 H 0.10 1.22 5.33 -51.93 -0.28 0.94 16 21 C 0.08 0.88 6.28 37.37 0.23 1.12 16 22 O -0.31 -3.59 10.27 -19.42 -0.20 -3.79 16 23 C 0.12 1.41 6.47 -39.21 -0.25 1.15 16 24 C -0.12 -1.16 9.93 -39.35 -0.39 -1.55 16 25 C -0.12 -1.16 10.02 -39.59 -0.40 -1.55 16 26 C 0.06 0.69 7.30 -39.47 -0.29 0.41 16 27 F -0.14 -1.62 17.27 2.25 0.04 -1.59 16 28 C -0.12 -1.28 9.64 -39.46 -0.38 -1.66 16 29 C -0.12 -1.42 5.75 -104.44 -0.60 -2.02 16 30 C -0.07 -0.84 5.03 -27.81 -0.14 -0.98 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.05 1.22 7.50 -51.93 -0.39 0.83 16 33 H 0.04 0.86 7.86 -51.93 -0.41 0.45 16 34 H 0.08 0.86 6.18 -51.93 -0.32 0.54 16 35 H 0.10 1.31 7.49 -51.93 -0.39 0.92 16 36 H 0.10 1.25 7.32 -51.93 -0.38 0.87 16 37 H 0.13 1.96 7.56 -51.93 -0.39 1.57 16 38 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 42 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.10 1.40 7.43 -51.93 -0.39 1.01 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -30.03 383.90 -6.85 -36.88 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.00 Total: 0.88 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.96 Total: -0.28 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.30 Total: -35.22 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.11 Total: -15.11 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 0.15 Total: -8.63 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.03 -6.85 -36.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095445448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.309 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -255.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds