Wall clock time and date at job start Tue Mar 31 2020 05:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99678 * 2 1 4 4 H 1.48507 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47171 * 299.99809 * 3 2 1 6 6 H 1.48496 * 109.47460 * 59.99958 * 3 2 1 7 7 C 1.37876 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99986 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99916 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46803 * 179.97438 * 9 7 2 11 11 C 1.46491 * 120.00246 * 90.00068 * 10 9 7 12 12 C 1.53003 * 109.47089 * 264.47517 * 11 10 9 13 13 C 1.53003 * 109.47043 * 180.02562 * 12 11 10 14 14 F 1.39902 * 109.47224 * 59.99925 * 13 12 11 15 15 F 1.39901 * 109.46981 * 180.02562 * 13 12 11 16 16 F 1.39904 * 109.47243 * 299.99770 * 13 12 11 17 17 C 1.34780 * 119.99832 * 269.99495 * 10 9 7 18 18 O 1.21284 * 119.99851 * 5.16485 * 17 10 9 19 19 C 1.50703 * 120.00071 * 185.16626 * 17 10 9 20 20 H 1.08998 * 109.69118 * 333.87141 * 19 17 10 21 21 C 1.53401 * 109.69598 * 94.46724 * 19 17 10 22 22 O 1.42833 * 108.35768 * 184.44927 * 21 19 17 23 23 C 1.35897 * 117.84332 * 310.77501 * 22 21 19 24 24 C 1.39129 * 118.46323 * 197.08980 * 23 22 21 25 25 C 1.37962 * 120.25317 * 180.22849 * 24 23 22 26 26 C 1.38480 * 119.93176 * 0.02562 * 25 24 23 27 27 F 1.35097 * 120.04130 * 179.91124 * 26 25 24 28 28 C 1.38293 * 119.92457 * 359.93122 * 26 25 24 29 29 C 1.38357 * 121.79807 * 17.18873 * 23 22 21 30 30 C 1.50770 * 121.41112 * 359.64401 * 29 23 22 31 31 H 0.97000 * 120.00213 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.47472 * 60.00092 * 9 7 2 33 33 H 1.08997 * 109.47126 * 299.99211 * 9 7 2 34 34 H 1.09001 * 109.47312 * 144.47397 * 11 10 9 35 35 H 1.09007 * 109.47076 * 24.47524 * 11 10 9 36 36 H 1.08997 * 109.47178 * 299.99957 * 12 11 10 37 37 H 1.08995 * 109.46811 * 60.00403 * 12 11 10 38 38 H 1.09003 * 109.68952 * 304.16205 * 21 19 17 39 39 H 1.08995 * 109.68970 * 64.73032 * 21 19 17 40 40 H 1.08008 * 119.87080 * 0.24840 * 24 23 22 41 41 H 1.08003 * 120.03898 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.84809 * 180.02562 * 28 26 25 43 43 H 1.08996 * 109.43859 * 257.61161 * 30 29 23 44 44 H 1.09002 * 109.43537 * 137.75142 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6792 -4.1693 1.2691 12 6 4.0144 -3.5214 1.6414 13 6 4.5119 -4.1034 2.9661 14 9 4.6852 -5.4852 2.8326 15 9 5.7324 -3.5106 3.3067 16 9 3.5726 -3.8461 3.9705 17 6 2.6410 -4.1248 -1.1667 18 8 2.3211 -3.6053 -2.2149 19 6 3.5281 -5.3431 -1.1694 20 1 4.0768 -5.4000 -0.2293 21 6 2.6735 -6.6045 -1.3474 22 8 3.5271 -7.7448 -1.2417 23 6 4.6699 -7.7526 -1.9771 24 6 5.3226 -8.9651 -2.1753 25 6 6.4881 -9.0149 -2.9119 26 6 7.0116 -7.8541 -3.4561 27 9 8.1537 -7.8999 -4.1762 28 6 6.3642 -6.6477 -3.2612 29 6 5.1926 -6.5943 -2.5242 30 6 4.5135 -5.2611 -2.3378 31 1 -0.4850 0.8400 -0.0004 32 1 0.6248 -2.5571 -0.8896 33 1 0.6242 -2.5567 0.8903 34 1 2.8141 -5.2460 1.1656 35 1 1.9472 -3.9685 2.0515 36 1 4.7463 -3.7223 0.8591 37 1 3.8793 -2.4449 1.7450 38 1 1.9104 -6.6438 -0.5701 39 1 2.1987 -6.5910 -2.3284 40 1 4.9151 -9.8710 -1.7512 41 1 6.9917 -9.9581 -3.0640 42 1 6.7734 -5.7432 -3.6865 43 1 3.9753 -4.9978 -3.2484 44 1 5.2632 -4.4985 -2.1271 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095445448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:02 Heat of formation + Delta-G solvation = -270.353760 kcal Electronic energy + Delta-G solvation = -35439.943313 eV Core-core repulsion = 30049.021891 eV Total energy + Delta-G solvation = -5390.921422 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.124 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -51.06833 -49.83456 -48.57157 -48.53160 -42.11070 -40.61910 -38.30836 -37.33069 -35.49167 -34.80720 -32.94001 -32.02776 -30.95089 -29.45265 -26.90966 -26.70706 -26.01371 -24.29065 -23.81826 -23.43224 -21.60365 -20.13922 -19.54033 -19.29479 -19.05345 -18.80295 -18.54274 -18.06122 -18.04829 -17.66390 -17.13143 -16.61259 -16.34029 -16.29640 -15.84400 -15.65386 -15.49530 -15.36814 -15.25260 -15.02011 -14.98318 -14.74343 -14.69887 -14.57617 -14.49686 -14.24078 -14.20781 -14.14935 -13.95660 -13.71477 -13.50552 -13.35109 -13.08712 -12.76094 -12.65101 -12.42189 -12.25860 -12.14219 -12.02739 -11.86493 -11.71735 -11.67493 -10.70005 -10.62537 -9.97707 -9.64388 -9.11538 -8.21776 -6.33775 0.11171 0.16271 1.37339 1.39709 1.48291 1.52625 1.74469 2.03859 2.24064 2.39857 2.53608 2.87578 3.03677 3.09790 3.12234 3.22747 3.36281 3.52364 3.56438 3.70582 3.77247 3.84579 3.95225 4.06437 4.08843 4.27147 4.30760 4.37716 4.44486 4.56172 4.58736 4.78048 4.82094 4.88805 4.95072 5.03013 5.10064 5.14803 5.23302 5.26887 5.52261 5.67885 5.78095 6.05783 6.28180 6.56328 6.75208 7.22076 7.39073 8.85850 Molecular weight = 375.12amu Principal moments of inertia in cm(-1) A = 0.008788 B = 0.003112 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.575843 B = 8993.882046 C =10382.220763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.059 0.941 9 C 0.259 3.741 10 N -0.593 5.593 11 C 0.109 3.891 12 C -0.186 4.186 13 C 0.466 3.534 14 F -0.180 7.180 15 F -0.189 7.189 16 F -0.186 7.186 17 C 0.516 3.484 18 O -0.572 6.572 19 C -0.140 4.140 20 H 0.122 0.878 21 C 0.079 3.921 22 O -0.304 6.304 23 C 0.107 3.893 24 C -0.115 4.115 25 C -0.114 4.114 26 C 0.053 3.947 27 F -0.148 7.148 28 C -0.123 4.123 29 C -0.130 4.130 30 C -0.064 4.064 31 H 0.265 0.735 32 H 0.005 0.995 33 H 0.031 0.969 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.133 0.867 39 H 0.071 0.929 40 H 0.165 0.835 41 H 0.168 0.832 42 H 0.144 0.856 43 H 0.083 0.917 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.741 -18.437 1.542 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.078 0.922 9 C 0.138 3.862 10 N -0.323 5.323 11 C -0.014 4.014 12 C -0.226 4.226 13 C 0.411 3.589 14 F -0.161 7.161 15 F -0.170 7.170 16 F -0.167 7.167 17 C 0.304 3.696 18 O -0.451 6.451 19 C -0.162 4.162 20 H 0.140 0.860 21 C 0.003 3.997 22 O -0.217 6.217 23 C 0.061 3.939 24 C -0.133 4.133 25 C -0.133 4.133 26 C 0.034 3.966 27 F -0.126 7.126 28 C -0.142 4.142 29 C -0.131 4.131 30 C -0.102 4.102 31 H 0.074 0.926 32 H 0.023 0.977 33 H 0.049 0.951 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.151 0.849 39 H 0.090 0.910 40 H 0.182 0.818 41 H 0.185 0.815 42 H 0.162 0.838 43 H 0.101 0.899 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.370 -18.197 1.141 21.488 hybrid contribution 0.364 1.739 -0.142 1.782 sum 11.735 -16.458 0.999 20.238 Atomic orbital electron populations 1.70029 1.07392 1.27909 1.51255 1.25721 0.95624 1.02609 0.94787 0.85538 0.79105 0.79583 0.77647 1.18925 1.21200 1.19999 1.21717 0.93438 0.91577 1.50590 0.92237 1.18895 0.87541 0.83289 0.96426 1.48094 1.44508 1.34412 1.05290 1.21630 0.94265 0.98711 0.86840 1.23417 1.01033 1.04914 0.93214 1.20349 0.75059 0.76059 0.87440 1.93190 1.95366 1.31544 1.96012 1.93180 1.46286 1.83906 1.93635 1.93193 1.65293 1.93865 1.64387 1.20576 0.80673 0.85068 0.83285 1.90690 1.58879 1.62819 1.32747 1.22046 0.97562 0.93764 1.02795 0.86044 1.22905 0.90881 0.81181 1.04721 1.86057 1.30761 1.42042 1.62878 1.19003 0.87701 0.93623 0.93533 1.20705 0.95595 0.96539 1.00443 1.21200 0.96207 0.98314 0.97550 1.17676 0.85412 0.95243 0.98317 1.91475 1.47836 1.97294 1.76038 1.20972 0.95233 0.98037 0.99972 1.19583 0.97007 0.94418 1.02116 1.20346 0.97451 0.94176 0.98180 0.92563 0.97671 0.95133 0.87039 0.88402 0.86451 0.87110 0.84884 0.91044 0.81775 0.81481 0.83834 0.89882 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.09 13.29 21.45 0.28 -52.81 16 2 C 0.01 0.64 5.46 84.65 0.46 1.11 16 3 Si 0.96 42.81 29.54 68.60 2.03 44.83 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.53 -27.90 9.21 25.60 0.24 -27.67 16 8 H 0.06 3.03 7.42 -2.91 -0.02 3.01 16 9 C 0.26 12.40 5.16 85.63 0.44 12.84 16 10 N -0.59 -21.26 2.47 -826.16 -2.04 -23.30 16 11 C 0.11 2.83 4.82 86.38 0.42 3.24 16 12 C -0.19 -4.59 5.33 30.60 0.16 -4.43 16 13 C 0.47 10.66 3.16 71.98 0.23 10.88 16 14 F -0.18 -3.80 16.80 44.97 0.76 -3.05 16 15 F -0.19 -4.61 17.32 44.97 0.78 -3.83 16 16 F -0.19 -4.65 16.80 44.97 0.76 -3.90 16 17 C 0.52 18.17 6.66 87.66 0.58 18.75 16 18 O -0.57 -26.00 15.64 -3.04 -0.05 -26.04 16 19 C -0.14 -3.47 1.97 -11.38 -0.02 -3.49 16 20 H 0.12 2.55 5.33 -2.39 -0.01 2.53 16 21 C 0.08 1.69 6.28 72.12 0.45 2.14 16 22 O -0.30 -6.34 10.27 -92.40 -0.95 -7.29 16 23 C 0.11 2.21 6.47 22.51 0.15 2.35 16 24 C -0.11 -1.86 9.93 22.42 0.22 -1.63 16 25 C -0.11 -1.77 10.02 22.26 0.22 -1.55 16 26 C 0.05 1.04 7.30 22.34 0.16 1.20 16 27 F -0.15 -3.12 17.27 44.97 0.78 -2.34 16 28 C -0.12 -2.55 9.64 22.35 0.22 -2.34 16 29 C -0.13 -2.86 5.75 -19.75 -0.11 -2.97 16 30 C -0.06 -1.58 5.03 29.89 0.15 -1.43 16 31 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.01 0.29 7.50 -2.39 -0.02 0.27 16 33 H 0.03 1.49 7.86 -2.39 -0.02 1.47 16 34 H 0.11 2.15 6.18 -2.39 -0.01 2.14 16 35 H 0.10 2.54 7.49 -2.38 -0.02 2.52 16 36 H 0.12 2.58 7.32 -2.39 -0.02 2.56 16 37 H 0.11 3.25 7.56 -2.39 -0.02 3.23 16 38 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 40 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 42 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 43 H 0.08 2.36 7.43 -2.39 -0.02 2.34 16 44 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -66.19 383.90 7.37 -58.81 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.06 Total: 11.89 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 3.97 Total: 7.01 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -1.75 Total: -76.10 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -1.00 Total: -33.33 kcal Atomic # 9 Polarization: -16.18 SS G_CDS: 3.07 Total: -13.12 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -66.19 7.37 -58.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095445448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.541 kcal (2) G-P(sol) polarization free energy of solvation -66.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds