Wall clock time and date at job start Tue Mar 31 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86799 * 119.99797 * 2 1 4 4 H 1.48502 * 109.47256 * 239.99591 * 3 2 1 5 5 H 1.48499 * 109.47311 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47174 * 119.99428 * 3 2 1 7 7 C 1.38831 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99938 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00211 * 0.02562 * 7 2 1 10 10 C 1.76203 * 100.00088 * 180.02562 * 9 7 2 11 11 N 1.30817 * 118.53522 * 359.97438 * 10 9 7 12 12 C 1.34633 * 122.09975 * 180.02562 * 11 10 9 13 13 C 1.39900 * 121.49287 * 180.02562 * 12 11 10 14 14 C 1.36575 * 119.83657 * 179.97438 * 13 12 11 15 15 C 1.38945 * 121.00374 * 359.97438 * 14 13 12 16 16 C 1.37759 * 120.57684 * 359.97438 * 15 14 13 17 17 C 1.39397 * 119.41803 * 0.02562 * 16 15 14 18 18 C 1.46770 * 121.94512 * 180.02562 * 17 16 15 19 19 N 1.31971 * 120.78533 * 359.97438 * 18 17 16 20 20 C 1.33581 * 120.67064 * 179.97438 * 19 18 17 21 21 O 1.22111 * 120.33919 * 180.02562 * 20 19 18 22 22 C 1.47345 * 119.32113 * 359.97438 * 20 19 18 23 23 C 1.48140 * 120.53792 * 179.97438 * 22 20 19 24 24 C 1.39466 * 120.12782 * 144.72986 * 23 22 20 25 25 C 1.37983 * 119.86385 * 179.74415 * 24 23 22 26 26 C 1.38340 * 120.13374 * 0.52737 * 25 24 23 27 27 C 1.38346 * 120.27008 * 359.72570 * 26 25 24 28 28 C 1.37986 * 120.12999 * 0.02562 * 27 26 25 29 29 N 1.31397 * 118.91376 * 359.91172 * 22 20 19 30 30 N 1.36879 * 117.68667 * 179.97438 * 18 17 16 31 31 H 0.97005 * 120.00324 * 0.02562 * 1 2 3 32 32 H 1.08009 * 120.08322 * 359.96719 * 13 12 11 33 33 H 1.07996 * 119.49743 * 180.27637 * 14 13 12 34 34 H 1.07998 * 119.71005 * 180.02562 * 15 14 13 35 35 H 1.07996 * 120.29083 * 179.97438 * 16 15 14 36 36 H 1.08007 * 120.06960 * 359.97438 * 24 23 22 37 37 H 1.08001 * 119.93232 * 180.27663 * 25 24 23 38 38 H 1.08003 * 119.86768 * 179.74247 * 26 25 24 39 39 H 1.07997 * 119.93935 * 179.97438 * 27 26 25 40 40 H 1.08002 * 120.06989 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0092 -1.2023 0.0005 8 1 3.0892 -1.2023 0.0010 9 16 1.1283 -2.7282 0.0005 10 6 2.4781 -3.8608 0.0021 11 7 3.6955 -3.3821 0.0023 12 6 4.7787 -4.1817 0.0030 13 6 6.0751 -3.6560 0.0037 14 6 7.1500 -4.4985 0.0049 15 6 6.9786 -5.8773 0.0059 16 6 5.7152 -6.4264 0.0062 17 6 4.6033 -5.5857 0.0050 18 6 3.2327 -6.1108 0.0059 19 7 3.0076 -7.4112 0.0073 20 6 1.7592 -7.8866 0.0086 21 8 1.5579 -9.0910 0.0104 22 6 0.6277 -6.9428 0.0090 23 6 -0.7676 -7.4405 0.0099 24 6 -1.7574 -6.7479 0.7067 25 6 -3.0563 -7.2135 0.6995 26 6 -3.3755 -8.3707 0.0119 27 6 -2.3970 -9.0650 -0.6769 28 6 -1.0955 -8.6065 -0.6813 29 7 0.8765 -5.6526 0.0098 30 7 2.2052 -5.2065 0.0051 31 1 -0.4851 0.8401 -0.0004 32 1 6.2257 -2.5864 0.0032 33 1 8.1484 -4.0868 0.0100 34 1 7.8434 -6.5242 0.0072 35 1 5.5873 -7.4988 0.0066 36 1 -1.5085 -5.8470 1.2479 37 1 -3.8246 -6.6756 1.2351 38 1 -4.3928 -8.7335 0.0125 39 1 -2.6520 -9.9680 -1.2116 40 1 -0.3325 -9.1491 -1.2197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095469499.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:10 Heat of formation + Delta-G solvation = 119.006154 kcal Electronic energy + Delta-G solvation = -29956.471604 eV Core-core repulsion = 25828.846676 eV Total energy + Delta-G solvation = -4127.624928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 376.073 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.63374 -39.77089 -38.75042 -37.85539 -36.02748 -34.71848 -33.22369 -32.82805 -31.33401 -30.98839 -30.02837 -29.69076 -26.16650 -25.42103 -24.92607 -24.36609 -22.58165 -22.37535 -21.66228 -20.04008 -19.25316 -19.09274 -17.72532 -17.38028 -16.70552 -16.33391 -15.76556 -15.61370 -15.34845 -15.29049 -14.79921 -14.75585 -14.30053 -14.17469 -13.80832 -13.49522 -13.44368 -13.37038 -13.16870 -12.81678 -12.36415 -11.89004 -11.83032 -11.68328 -11.60812 -11.51436 -11.49501 -11.35594 -11.27835 -11.23171 -11.06203 -10.51917 -9.79465 -9.64112 -9.48616 -9.34702 -9.01784 -8.94712 -8.87455 -8.72559 -8.21171 -7.17472 -6.92503 -4.63382 0.20000 0.35193 0.82700 1.38059 1.40555 1.59150 1.87604 2.26660 2.68500 2.99226 2.99783 3.03928 3.49172 3.50683 3.58341 3.75719 3.84786 4.20178 4.32456 4.57587 4.58276 4.76119 4.81500 4.87997 4.93849 4.97073 5.09207 5.11632 5.15092 5.40096 5.44395 5.49363 5.64056 5.78764 5.83622 5.98699 6.01421 6.19814 6.33738 6.40444 6.43127 6.47584 6.51741 6.57766 6.77876 6.87829 6.99296 7.15357 7.65406 7.98465 8.00390 8.17668 8.58996 10.12610 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.006997 B = 0.003955 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4000.966619 B = 7077.748442 C =10974.220628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.080 3.920 3 Si 0.940 3.060 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.121 0.879 9 S 0.270 5.730 10 C 0.301 3.699 11 N -0.516 5.516 12 C 0.205 3.795 13 C -0.132 4.132 14 C -0.058 4.058 15 C -0.173 4.173 16 C -0.018 4.018 17 C -0.173 4.173 18 C 0.469 3.531 19 N -0.592 5.592 20 C 0.501 3.499 21 O -0.484 6.484 22 C 0.098 3.902 23 C -0.043 4.043 24 C -0.073 4.073 25 C -0.127 4.127 26 C -0.100 4.100 27 C -0.128 4.128 28 C -0.064 4.064 29 N -0.193 5.193 30 N -0.359 5.359 31 H 0.284 0.716 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.279 -8.446 -0.015 8.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.133 4.133 3 Si 0.763 3.237 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.699 4.699 8 H 0.139 0.861 9 S 0.520 5.480 10 C -0.058 4.058 11 N -0.244 5.244 12 C 0.081 3.919 13 C -0.154 4.154 14 C -0.078 4.078 15 C -0.194 4.194 16 C -0.038 4.038 17 C -0.185 4.185 18 C 0.210 3.790 19 N -0.340 5.340 20 C 0.282 3.718 21 O -0.356 6.356 22 C -0.092 4.092 23 C -0.046 4.046 24 C -0.093 4.093 25 C -0.145 4.145 26 C -0.119 4.119 27 C -0.147 4.147 28 C -0.084 4.084 29 N -0.005 5.005 30 N -0.152 5.152 31 H 0.094 0.906 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.271 -7.964 -0.011 7.969 hybrid contribution 1.475 0.220 0.019 1.492 sum 1.204 -7.745 0.008 7.838 Atomic orbital electron populations 1.69873 1.06488 1.29907 1.42416 1.25301 0.95226 1.00409 0.92324 0.85850 0.79233 0.78642 0.79939 1.18939 1.20393 1.18934 1.23907 0.98838 0.89785 1.57416 0.86078 1.84081 0.97532 0.94321 1.72043 1.26560 1.00511 0.82015 0.96707 1.68908 0.94684 1.31890 1.28915 1.18824 0.93650 0.87832 0.91583 1.20516 0.89292 1.00754 1.04861 1.20959 0.98698 0.93411 0.94773 1.20988 0.96674 0.95080 1.06681 1.20996 0.90545 0.99948 0.92333 1.18935 0.88846 0.94050 1.16628 1.21877 0.88706 0.85862 0.82538 1.69708 1.22718 1.07877 1.33686 1.19207 0.84619 0.89670 0.78281 1.90821 1.85248 1.14621 1.44870 1.25086 0.98092 0.90992 0.95039 1.17918 0.87892 0.96868 1.01960 1.21374 0.92271 0.98522 0.97146 1.21095 0.96109 0.96951 1.00383 1.21331 0.99407 0.95015 0.96122 1.21074 0.92564 1.00473 1.00541 1.21323 0.96890 0.93556 0.96626 1.76263 0.95843 1.15742 1.12698 1.47079 1.03288 1.07268 1.57527 0.90557 0.84489 0.85455 0.85512 0.84365 0.84910 0.85290 0.85726 0.85409 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.06 13.22 55.49 0.73 -20.32 16 2 C 0.08 1.91 5.49 -17.47 -0.10 1.81 16 3 Si 0.94 18.46 29.55 -169.99 -5.02 13.44 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 7 C -0.55 -13.31 9.23 30.95 0.29 -13.03 16 8 H 0.12 2.92 6.49 -52.49 -0.34 2.58 16 9 S 0.27 6.09 20.86 -107.50 -2.24 3.85 16 10 C 0.30 6.43 7.88 -88.00 -0.69 5.74 16 11 N -0.52 -10.81 8.24 -10.75 -0.09 -10.90 16 12 C 0.20 3.76 6.62 -84.77 -0.56 3.20 16 13 C -0.13 -1.97 9.98 -39.56 -0.39 -2.36 16 14 C -0.06 -0.69 9.95 -39.92 -0.40 -1.09 16 15 C -0.17 -2.07 10.02 -39.49 -0.40 -2.47 16 16 C -0.02 -0.26 9.66 -39.33 -0.38 -0.64 16 17 C -0.17 -3.09 5.90 -104.78 -0.62 -3.71 16 18 C 0.47 9.18 7.57 -154.31 -1.17 8.02 16 19 N -0.59 -11.75 9.79 -11.19 -0.11 -11.86 16 20 C 0.50 9.89 7.79 -13.09 -0.10 9.78 16 21 O -0.48 -9.96 15.61 4.82 0.08 -9.88 16 22 C 0.10 1.78 6.76 -80.28 -0.54 1.24 16 23 C -0.04 -0.68 5.70 -104.92 -0.60 -1.28 16 24 C -0.07 -1.02 9.60 -39.22 -0.38 -1.40 16 25 C -0.13 -1.44 10.03 -39.64 -0.40 -1.84 16 26 C -0.10 -1.03 10.04 -39.50 -0.40 -1.42 16 27 C -0.13 -1.44 10.03 -39.63 -0.40 -1.84 16 28 C -0.06 -0.90 8.91 -39.22 -0.35 -1.25 16 29 N -0.19 -3.72 10.35 34.71 0.36 -3.36 16 30 N -0.36 -7.29 3.70 -10.65 -0.04 -7.33 16 31 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 32 H 0.14 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.14 1.95 7.73 -52.49 -0.41 1.54 16 36 H 0.13 1.84 7.99 -52.48 -0.42 1.42 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.96 6.68 -52.49 -0.35 1.61 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -28.19 369.35 -11.54 -39.73 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -3.19 Total: 3.62 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -7.58 Total: -2.53 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.86 Total: -53.78 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.44 kcal Atomic # 16 Polarization: 6.09 SS G_CDS: -2.24 Total: 3.85 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.19 -11.54 -39.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095469499.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.732 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds