Wall clock time and date at job start Tue Mar 31 2020 05:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.30343 * 119.99396 * 2 1 4 4 N 1.37485 * 119.99602 * 185.18454 * 3 2 1 5 5 C 1.46500 * 120.00350 * 0.02562 * 4 3 2 6 6 C 1.52999 * 109.47413 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47122 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46980 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00148 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00079 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99673 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00190 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47352 * 90.00028 * 12 10 8 14 14 H 1.48504 * 109.47353 * 210.00109 * 12 10 8 15 15 H 1.48500 * 109.47137 * 329.99941 * 12 10 8 16 16 N 1.37486 * 120.00349 * 5.19288 * 3 2 1 17 17 C 1.46497 * 120.00055 * 185.21690 * 16 3 2 18 18 C 1.50695 * 109.47333 * 175.01398 * 17 16 3 19 19 C 1.39917 * 126.04171 * 89.97018 * 18 17 16 20 20 N 1.30875 * 108.24594 * 180.02562 * 19 18 17 21 21 N 1.40088 * 108.21997 * 359.97438 * 20 19 18 22 22 C 1.40210 * 126.05553 * 179.97438 * 21 20 19 23 23 C 1.38829 * 120.05574 * 179.75047 * 22 21 20 24 24 C 1.38113 * 119.94784 * 179.77149 * 23 22 21 25 25 C 1.38391 * 120.04866 * 0.52858 * 24 23 22 26 26 Cl 1.73597 * 119.94305 * 179.72153 * 25 24 23 27 27 C 1.38387 * 120.10812 * 359.70332 * 25 24 23 28 28 C 1.38102 * 120.05259 * 0.04102 * 27 25 24 29 29 C 1.35217 * 107.89233 * 0.26669 * 21 20 19 30 30 H 1.08996 * 109.47267 * 295.00411 * 1 2 3 31 31 H 1.08999 * 109.47104 * 55.00617 * 1 2 3 32 32 H 1.09000 * 109.46850 * 175.00924 * 1 2 3 33 33 H 0.97000 * 119.99974 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47252 * 300.00046 * 5 4 3 35 35 H 1.09001 * 109.46990 * 59.99926 * 5 4 3 36 36 H 1.09001 * 109.47151 * 300.00356 * 6 5 4 37 37 H 1.09001 * 109.46901 * 60.00118 * 6 5 4 38 38 H 1.09001 * 109.46819 * 299.99927 * 7 6 5 39 39 H 1.08994 * 109.46901 * 60.00144 * 7 6 5 40 40 H 0.96998 * 119.99926 * 179.97438 * 11 10 8 41 41 H 0.96999 * 119.99936 * 5.21655 * 16 3 2 42 42 H 1.09003 * 109.47334 * 55.00751 * 17 16 3 43 43 H 1.09010 * 109.46889 * 295.00770 * 17 16 3 44 44 H 1.08004 * 125.87190 * 0.05891 * 19 18 17 45 45 H 1.08004 * 120.02733 * 0.02562 * 23 22 21 46 46 H 1.07997 * 119.97328 * 180.25420 * 24 23 22 47 47 H 1.08005 * 119.96943 * 180.02562 * 27 25 24 48 48 H 1.08005 * 120.02279 * 179.97438 * 28 27 25 49 49 H 1.07998 * 126.14464 * 179.69549 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1166 1.1289 0.0000 4 7 3.4873 1.1314 -0.1076 5 6 4.2154 -0.1347 -0.2228 6 6 5.7154 0.1474 -0.3284 7 6 6.4757 -1.1749 -0.4494 8 6 7.9532 -0.8970 -0.5528 9 1 8.3139 0.1208 -0.5345 10 6 8.8446 -1.9422 -0.6718 11 7 8.4053 -3.1816 -0.6945 12 14 10.6760 -1.5979 -0.8006 13 1 11.2716 -1.5713 0.5594 14 1 11.3249 -2.6647 -1.6045 15 1 10.8874 -0.2839 -1.4594 16 7 1.4334 2.3171 0.1078 17 6 2.1522 3.5884 -0.0069 18 6 1.1662 4.7276 0.0239 19 6 0.7194 5.3989 1.1673 20 7 -0.1289 6.3232 0.7945 21 7 -0.2492 6.2705 -0.6002 22 6 -1.0618 7.0960 -1.3902 23 6 -1.0815 6.9378 -2.7693 24 6 -1.8864 7.7490 -3.5450 25 6 -2.6646 8.7261 -2.9493 26 17 -3.6698 9.7490 -3.9275 27 6 -2.6430 8.8889 -1.5753 28 6 -1.8438 8.0767 -0.7951 29 6 0.5523 5.2783 -1.0491 30 1 -0.3633 0.4344 0.9313 31 1 -0.3633 0.5893 -0.8419 32 1 -0.3633 -1.0238 -0.0894 33 1 3.9723 1.9714 -0.1072 34 1 4.0215 -0.7468 0.6580 35 1 3.8822 -0.6655 -1.1146 36 1 5.9089 0.7593 -1.2095 37 1 6.0489 0.6784 0.5632 38 1 6.2822 -1.7871 0.4315 39 1 6.1421 -1.7054 -1.3411 40 1 9.0323 -3.9169 -0.7786 41 1 0.4754 2.3136 0.2597 42 1 2.7038 3.6105 -0.9468 43 1 2.8488 3.6883 0.8256 44 1 1.0228 5.1906 2.1827 45 1 -0.4710 6.1782 -3.2350 46 1 -1.9052 7.6235 -4.6175 47 1 -3.2516 9.6520 -1.1127 48 1 -1.8270 8.2045 0.2773 49 1 0.6807 4.9799 -2.0791 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095963171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:38 Heat of formation + Delta-G solvation = 107.216325 kcal Electronic energy + Delta-G solvation = -29188.299180 eV Core-core repulsion = 24984.362137 eV Total energy + Delta-G solvation = -4203.937043 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.152 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.74239 -40.28949 -39.69115 -37.56833 -36.79521 -35.30747 -34.80015 -34.01687 -32.73864 -32.43716 -31.27548 -30.12997 -28.50816 -27.16611 -26.06955 -24.76746 -24.48916 -23.94306 -22.07961 -21.92456 -21.15915 -20.54422 -19.34047 -18.57793 -18.17884 -17.73474 -17.12480 -16.58244 -16.47808 -16.35669 -16.33482 -16.00562 -15.46408 -15.29949 -15.12220 -14.80147 -14.73787 -14.48388 -14.46973 -14.18766 -13.99678 -13.75149 -13.65640 -13.51331 -13.42131 -13.32503 -12.79361 -12.77507 -12.68534 -12.45502 -12.26220 -12.18384 -11.94299 -11.70729 -11.42846 -11.40004 -11.19999 -11.11379 -10.49780 -10.28856 -10.25993 -9.84223 -9.56160 -9.09560 -8.62480 -8.14207 -6.25191 -0.45361 0.08277 0.95774 1.01830 1.26698 1.44701 1.45943 1.47109 1.56764 2.10295 2.18886 2.46417 2.48645 3.11356 3.19567 3.27081 3.61854 3.71560 3.78050 4.00967 4.04225 4.14780 4.22891 4.28601 4.40734 4.41306 4.44498 4.52646 4.66642 4.72083 4.75237 4.78994 4.79858 4.83127 5.00269 5.03280 5.04611 5.11675 5.13406 5.21796 5.27873 5.38918 5.49498 5.57180 5.80370 5.81395 5.91828 5.99617 6.18765 6.29377 6.37949 6.47480 6.92355 7.08484 7.44082 7.87389 8.97839 Molecular weight = 375.15amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.001246 C = 0.001206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.117151 B =22470.753398 C =23213.853253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.721 5.721 3 C 0.623 3.377 4 N -0.716 5.716 5 C 0.167 3.833 6 C -0.103 4.103 7 C 0.026 3.974 8 C -0.540 4.540 9 H 0.066 0.934 10 C -0.002 4.002 11 N -0.935 5.935 12 Si 0.965 3.035 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.260 1.260 16 N -0.753 5.753 17 C 0.195 3.805 18 C -0.243 4.243 19 C 0.076 3.924 20 N -0.320 5.320 21 N -0.330 5.330 22 C 0.148 3.852 23 C -0.126 4.126 24 C -0.080 4.080 25 C -0.054 4.054 26 Cl -0.064 7.064 27 C -0.086 4.086 28 C -0.118 4.118 29 C 0.079 3.921 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.411 0.589 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.063 0.937 38 H -0.009 1.009 39 H -0.008 1.008 40 H 0.262 0.738 41 H 0.408 0.592 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.210 0.790 45 H 0.162 0.838 46 H 0.164 0.836 47 H 0.156 0.844 48 H 0.141 0.859 49 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.353 29.297 -3.602 38.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.467 5.467 3 C 0.260 3.740 4 N -0.359 5.359 5 C 0.042 3.958 6 C -0.141 4.141 7 C -0.012 4.012 8 C -0.578 4.578 9 H 0.084 0.916 10 C -0.200 4.200 11 N -0.575 5.575 12 Si 0.789 3.211 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.184 1.184 16 N -0.401 5.401 17 C 0.069 3.931 18 C -0.254 4.254 19 C -0.111 4.111 20 N -0.138 5.138 21 N -0.105 5.105 22 C 0.055 3.945 23 C -0.147 4.147 24 C -0.099 4.099 25 C -0.082 4.082 26 Cl -0.035 7.035 27 C -0.105 4.105 28 C -0.138 4.138 29 C -0.064 4.064 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.249 0.751 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.071 0.929 41 H 0.246 0.754 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.226 0.774 45 H 0.180 0.820 46 H 0.182 0.818 47 H 0.174 0.826 48 H 0.159 0.841 49 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -25.932 29.257 -3.388 39.241 hybrid contribution 0.628 0.067 -0.083 0.637 sum -25.304 29.324 -3.471 38.888 Atomic orbital electron populations 1.21611 0.87845 1.01221 0.98623 1.72565 1.09148 1.21710 1.43253 1.19079 0.84819 0.82747 0.87397 1.43907 1.01484 1.09386 1.81133 1.20873 0.90309 0.84633 1.00022 1.21600 0.92205 0.98692 1.01585 1.18914 0.94264 0.93064 0.94972 1.21710 0.93055 0.93278 1.49747 0.91627 1.25988 1.04171 0.94857 0.94943 1.70117 1.36346 0.99465 1.51582 0.85455 0.79156 0.78191 0.78277 1.19923 1.21112 1.18441 1.45500 1.10754 1.02826 1.81025 1.19590 0.91911 0.78865 1.02722 1.20070 1.08344 1.04804 0.92191 1.24468 0.93347 0.92064 1.01255 1.77476 1.23104 1.24420 0.88776 1.45888 1.33310 1.26125 1.05149 1.17892 0.93723 0.92811 0.90032 1.21042 1.01582 1.02092 0.89958 1.21154 0.93979 0.92911 1.01878 1.21136 0.98237 0.96646 0.92150 1.98396 1.67756 1.66965 1.70369 1.21127 0.98438 0.99470 0.91426 1.20901 0.96638 0.94909 1.01390 1.22973 0.92073 0.89472 1.01890 0.94597 0.94488 0.92024 0.75096 0.94007 0.93842 0.91712 0.91831 0.99077 0.98964 0.92913 0.75429 0.90204 0.90268 0.77384 0.82025 0.81818 0.82587 0.84107 0.77724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.46 9.95 127.77 1.27 2.73 16 2 N -0.72 -22.88 10.17 -370.87 -3.77 -26.65 16 3 C 0.62 16.31 8.36 260.53 2.18 18.49 16 4 N -0.72 -18.96 5.57 -349.40 -1.95 -20.90 16 5 C 0.17 5.81 5.67 86.38 0.49 6.30 16 6 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 7 C 0.03 1.33 4.97 29.85 0.15 1.48 16 8 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 9 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 10 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 11 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 12 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 14 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 16 N -0.75 -13.26 5.50 -353.14 -1.94 -15.20 16 17 C 0.19 2.40 5.53 85.63 0.47 2.87 16 18 C -0.24 -2.95 5.47 -20.13 -0.11 -3.06 16 19 C 0.08 1.04 11.96 85.24 1.02 2.06 16 20 N -0.32 -5.54 11.87 -56.97 -0.68 -6.21 16 21 N -0.33 -4.85 3.80 -187.74 -0.71 -5.57 16 22 C 0.15 1.92 6.69 38.08 0.25 2.17 16 23 C -0.13 -1.07 9.45 22.38 0.21 -0.86 16 24 C -0.08 -0.63 9.82 22.28 0.22 -0.41 16 25 C -0.05 -0.54 6.32 22.34 0.14 -0.40 16 26 Cl -0.06 -0.64 28.95 -2.72 -0.08 -0.71 16 27 C -0.09 -0.85 9.82 22.27 0.22 -0.64 16 28 C -0.12 -1.49 9.66 22.38 0.22 -1.28 16 29 C 0.08 0.90 10.71 83.50 0.89 1.79 16 30 H 0.04 0.79 7.88 -2.39 -0.02 0.78 16 31 H 0.04 0.81 7.99 -2.39 -0.02 0.79 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.41 8.54 7.03 -92.71 -0.65 7.89 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 38 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.41 6.91 6.81 -92.71 -0.63 6.27 16 42 H 0.08 0.88 7.99 -2.39 -0.02 0.86 16 43 H 0.08 0.89 8.03 -2.38 -0.02 0.87 16 44 H 0.21 1.86 8.06 -2.91 -0.02 1.83 16 45 H 0.16 0.59 6.74 -2.91 -0.02 0.57 16 46 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 47 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 48 H 0.14 1.89 7.70 -2.91 -0.02 1.86 16 49 H 0.21 1.07 7.04 -2.91 -0.02 1.05 16 Total: -1.00 -73.08 428.67 1.36 -71.72 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.30 Total: 16.64 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 8.48 Total: -2.00 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -8.77 Total: -131.35 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.71 kcal Total: -73.08 1.36 -71.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095963171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.938 kcal (2) G-P(sol) polarization free energy of solvation -73.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds