Wall clock time and date at job start Tue Mar 31 2020 05:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38865 * 125.03001 * 2 1 4 4 C 1.40377 * 143.96035 * 0.06875 * 3 2 1 5 5 C 1.37681 * 107.70067 * 179.97438 * 4 3 2 6 6 C 1.46572 * 125.87866 * 180.02562 * 5 4 3 7 7 O 1.21712 * 120.00135 * 186.19250 * 6 5 4 8 8 N 1.34775 * 119.99896 * 6.19221 * 6 5 4 9 9 C 1.46498 * 120.00254 * 185.05802 * 8 6 5 10 10 C 1.50696 * 109.47582 * 175.00248 * 9 8 6 11 11 H 1.08002 * 120.00009 * 4.98534 * 10 9 8 12 12 C 1.37875 * 120.00087 * 184.98862 * 10 9 8 13 13 N 1.31507 * 120.00158 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99705 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47334 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47002 * 120.00118 * 14 12 10 17 17 H 1.48496 * 109.47352 * 239.99699 * 14 12 10 18 18 N 1.38179 * 108.24712 * 0.02562 * 5 4 3 19 19 C 1.39099 * 125.75548 * 180.24773 * 18 5 4 20 20 N 1.32399 * 119.20099 * 172.90904 * 19 18 5 21 21 C 1.32269 * 120.75342 * 179.71942 * 20 19 18 22 22 C 1.38625 * 119.17768 * 0.54273 * 21 20 19 23 23 C 1.38618 * 118.53240 * 359.72785 * 22 21 20 24 24 N 1.32266 * 119.18386 * 0.02562 * 23 22 21 25 25 C 1.37389 * 108.48566 * 359.97438 * 18 5 4 26 26 C 1.46657 * 145.08551 * 180.02562 * 25 18 5 27 27 C 1.39673 * 133.47004 * 0.06323 * 26 25 18 28 28 C 1.36658 * 119.84040 * 179.97438 * 27 26 25 29 29 C 1.38770 * 120.46216 * 359.92047 * 28 27 26 30 30 C 1.37797 * 120.65176 * 0.02562 * 29 28 27 31 31 C 1.37966 * 125.02934 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47211 * 90.00147 * 1 2 3 33 33 H 1.09003 * 109.46624 * 210.00165 * 1 2 3 34 34 H 1.08998 * 109.46927 * 329.99793 * 1 2 3 35 35 H 1.08000 * 126.14766 * 359.95187 * 4 3 2 36 36 H 0.97002 * 119.99553 * 5.04538 * 8 6 5 37 37 H 1.09005 * 109.46596 * 295.00395 * 9 8 6 38 38 H 1.09001 * 109.47060 * 54.99619 * 9 8 6 39 39 H 0.97000 * 120.00295 * 180.02562 * 13 12 10 40 40 H 1.07994 * 120.40956 * 180.29581 * 21 20 19 41 41 H 1.07998 * 120.72635 * 179.75480 * 22 21 20 42 42 H 1.07998 * 120.40567 * 180.02562 * 23 22 21 43 43 H 1.07997 * 120.08638 * 359.92331 * 27 26 25 44 44 H 1.07993 * 119.77150 * 179.97438 * 28 27 26 45 45 H 1.08006 * 119.67473 * 180.02562 * 29 28 27 46 46 H 1.08003 * 120.06484 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2621 1.1371 0.0000 4 6 2.2374 2.5407 0.0010 5 6 3.5414 2.9823 0.0006 6 6 3.9741 4.3827 0.0019 7 8 5.1549 4.6550 -0.1123 8 7 3.0644 5.3689 0.1295 9 6 3.4815 6.7690 0.0199 10 6 2.2680 7.6607 0.0762 11 1 1.2933 7.2350 0.2636 12 6 2.4021 9.0200 -0.1115 13 7 3.5890 9.5385 -0.3392 14 14 0.8977 10.1252 -0.0423 15 1 -0.3090 9.3025 0.2266 16 1 1.0669 11.1243 1.0432 17 1 0.7392 10.8275 -1.3411 18 7 4.3722 1.8781 -0.0012 19 6 5.7629 1.9073 0.0028 20 7 6.4324 0.7737 0.1431 21 6 7.7550 0.7652 0.1456 22 6 8.4388 1.9634 0.0104 23 6 7.7061 3.1318 -0.1289 24 7 6.3850 3.0686 -0.1281 25 6 3.5929 0.7467 -0.0014 26 6 3.6021 -0.7199 -0.0022 27 6 4.6217 -1.6745 -0.0024 28 6 4.3080 -3.0045 -0.0028 29 6 2.9823 -3.4147 -0.0014 30 6 1.9608 -2.4898 -0.0001 31 6 2.2570 -1.1297 -0.0005 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.3542 3.1622 0.0016 36 1 2.1334 5.1516 0.2938 37 1 4.1512 7.0141 0.8443 38 1 4.0002 6.9205 -0.9268 39 1 3.6833 10.4949 -0.4709 40 1 8.2955 -0.1633 0.2557 41 1 9.5186 1.9859 0.0132 42 1 8.2079 4.0821 -0.2367 43 1 5.6556 -1.3623 -0.0030 44 1 5.0972 -3.7416 -0.0033 45 1 2.7488 -4.4692 -0.0013 46 1 0.9323 -2.8195 0.0005 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096037300.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:02 Heat of formation + Delta-G solvation = 172.071674 kcal Electronic energy + Delta-G solvation = -33317.317798 eV Core-core repulsion = 28982.792849 eV Total energy + Delta-G solvation = -4334.524949 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.144 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.35808 -40.88985 -39.47735 -37.96688 -36.64552 -34.24128 -33.70989 -33.16567 -32.32939 -31.95405 -30.43656 -29.86962 -28.55615 -26.93999 -26.30238 -24.55911 -24.15696 -23.72179 -22.20595 -21.82361 -20.73207 -20.03688 -19.51367 -18.53053 -17.61101 -16.93943 -16.32221 -16.24455 -16.13676 -15.75031 -15.43111 -15.22904 -15.15150 -14.92665 -14.44697 -14.39167 -14.15061 -13.97052 -13.84363 -13.46607 -13.44009 -13.39388 -12.70902 -12.65245 -12.56835 -12.33446 -11.93812 -11.69056 -11.50445 -11.26054 -11.22311 -10.99573 -10.91459 -10.83831 -10.79030 -10.27922 -9.93239 -9.56114 -9.45434 -9.35569 -8.80227 -8.70149 -8.09303 -7.83669 -7.58711 -7.34357 -6.15665 -4.21696 0.42961 1.12854 1.18541 1.46997 2.02969 2.07276 2.68834 2.84000 3.24440 3.31708 3.34641 3.76283 3.82754 3.85821 3.98305 4.16020 4.31235 4.41525 4.56627 4.58016 4.67773 4.82488 4.94498 4.97125 5.06060 5.10268 5.12049 5.18545 5.21290 5.28869 5.35366 5.43600 5.51772 5.59213 5.75678 5.79128 5.95681 6.10414 6.19527 6.27920 6.44888 6.55434 6.69505 6.77754 6.90175 7.13643 7.23071 7.33329 7.43049 7.50332 7.55272 7.71626 7.98507 8.13967 8.66300 8.82162 9.17673 9.45091 10.94611 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.002790 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.062478 B =10034.326130 C =12814.307978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.483 5.483 3 C 0.059 3.941 4 C -0.132 4.132 5 C 0.049 3.951 6 C 0.547 3.453 7 O -0.484 6.484 8 N -0.702 5.702 9 C 0.256 3.744 10 C -0.540 4.540 11 H 0.064 0.936 12 C 0.064 3.936 13 N -0.886 5.886 14 Si 0.903 3.097 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 N -0.344 5.344 19 C 0.514 3.486 20 N -0.534 5.534 21 C 0.164 3.836 22 C -0.253 4.253 23 C 0.172 3.828 24 N -0.434 5.434 25 C 0.033 3.967 26 C -0.070 4.070 27 C -0.051 4.051 28 C -0.165 4.165 29 C -0.087 4.087 30 C -0.147 4.147 31 C 0.146 3.854 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.159 0.841 36 H 0.389 0.611 37 H 0.024 0.976 38 H 0.033 0.967 39 H 0.265 0.735 40 H 0.172 0.828 41 H 0.149 0.851 42 H 0.175 0.825 43 H 0.137 0.863 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 -25.161 0.894 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.172 5.172 3 C -0.047 4.047 4 C -0.161 4.161 5 C -0.062 4.062 6 C 0.330 3.670 7 O -0.357 6.357 8 N -0.353 5.353 9 C 0.135 3.865 10 C -0.579 4.579 11 H 0.082 0.918 12 C -0.140 4.140 13 N -0.523 5.523 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 N -0.023 5.023 19 C 0.160 3.840 20 N -0.252 5.252 21 C -0.003 4.003 22 C -0.276 4.276 23 C 0.004 3.996 24 N -0.152 5.152 25 C -0.078 4.078 26 C -0.076 4.076 27 C -0.069 4.069 28 C -0.185 4.185 29 C -0.106 4.106 30 C -0.168 4.168 31 C 0.040 3.960 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.177 0.823 36 H 0.222 0.778 37 H 0.041 0.959 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.189 0.811 41 H 0.166 0.834 42 H 0.192 0.808 43 H 0.155 0.845 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.603 -24.638 0.759 24.701 hybrid contribution -0.377 0.614 0.106 0.728 sum 1.227 -24.024 0.865 24.071 Atomic orbital electron populations 1.21857 0.76884 1.03978 1.02741 1.43065 1.04945 1.01674 1.67551 1.17828 0.88266 0.88954 1.09619 1.20399 0.95713 0.89760 1.10178 1.20813 0.87183 0.88510 1.09668 1.16961 0.87060 0.82859 0.80140 1.91026 1.14597 1.82129 1.47927 1.46245 1.10184 1.07839 1.70994 1.19105 0.96045 0.73572 0.97739 1.21264 0.93620 0.92139 1.50851 0.91809 1.24934 0.96329 0.97991 0.94730 1.69977 1.22224 1.12667 1.47469 0.86377 0.82465 0.80432 0.77732 1.19606 1.20849 1.20838 1.39812 1.00664 1.04762 1.57070 1.19424 0.85110 0.86369 0.93061 1.67649 1.10042 1.29494 1.18040 1.22969 0.88085 0.98686 0.90558 1.22898 1.03030 0.95182 1.06535 1.23561 0.88822 0.99043 0.88184 1.69849 1.10142 1.22406 1.12771 1.18548 0.87956 0.87485 1.13763 1.17890 0.92605 0.87615 1.09497 1.20684 0.99297 0.91488 0.95477 1.20584 0.96286 0.95419 1.06171 1.20803 0.92328 0.98631 0.98879 1.19949 0.99665 0.88620 1.08588 1.18079 0.88388 0.87936 1.01593 0.91591 0.90340 0.89886 0.82300 0.77836 0.95856 0.94901 0.92552 0.81109 0.83363 0.80831 0.84537 0.86155 0.85871 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 11.03 59.85 0.66 1.39 16 2 N -0.48 -6.25 3.24 -118.82 -0.38 -6.64 16 3 C 0.06 0.92 7.50 -83.70 -0.63 0.29 16 4 C -0.13 -2.06 10.31 -38.98 -0.40 -2.46 16 5 C 0.05 0.92 6.83 -81.85 -0.56 0.36 16 6 C 0.55 11.72 7.76 -12.90 -0.10 11.62 16 7 O -0.48 -11.50 12.38 5.18 0.06 -11.43 16 8 N -0.70 -15.10 5.51 -62.83 -0.35 -15.45 16 9 C 0.26 6.69 5.43 -5.20 -0.03 6.66 16 10 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 11 H 0.06 1.60 7.61 -52.49 -0.40 1.20 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 14 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 N -0.34 -6.39 3.00 -56.57 -0.17 -6.56 16 19 C 0.51 9.24 8.30 -322.05 -2.67 6.57 16 20 N -0.53 -7.94 7.72 -13.80 -0.11 -8.05 16 21 C 0.16 1.76 11.30 -17.22 -0.19 1.56 16 22 C -0.25 -2.57 10.17 -39.30 -0.40 -2.97 16 23 C 0.17 2.39 11.30 -17.22 -0.19 2.19 16 24 N -0.43 -8.04 5.51 -13.80 -0.08 -8.12 16 25 C 0.03 0.57 7.32 -81.81 -0.60 -0.03 16 26 C -0.07 -1.05 6.29 -105.07 -0.66 -1.71 16 27 C -0.05 -0.66 9.77 -39.62 -0.39 -1.04 16 28 C -0.16 -1.70 9.98 -39.96 -0.40 -2.10 16 29 C -0.09 -0.82 10.01 -39.55 -0.40 -1.21 16 30 C -0.15 -1.52 9.90 -39.39 -0.39 -1.91 16 31 C 0.15 1.93 6.79 -83.85 -0.57 1.36 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.50 7.99 -51.93 -0.42 0.08 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.16 2.01 7.44 -52.49 -0.39 1.62 16 36 H 0.39 7.22 7.23 -40.82 -0.30 6.93 16 37 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 43 H 0.14 1.73 6.15 -52.49 -0.32 1.41 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 45 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 46 H 0.12 0.93 7.98 -52.48 -0.42 0.51 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -35.73 391.79 -12.92 -48.64 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.18 Total: 5.65 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: -8.34 Total: 5.41 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -0.35 Total: -69.87 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.06 Total: -11.43 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.73 -12.92 -48.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096037300.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.714 kcal (2) G-P(sol) polarization free energy of solvation -35.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds