Wall clock time and date at job start Tue Mar 31 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38865 * 125.03001 * 2 1 4 4 C 1.40377 * 143.96035 * 0.06875 * 3 2 1 5 5 C 1.37681 * 107.70067 * 179.97438 * 4 3 2 6 6 C 1.46572 * 125.87866 * 180.02562 * 5 4 3 7 7 O 1.21712 * 120.00135 * 186.19250 * 6 5 4 8 8 N 1.34775 * 119.99896 * 6.19221 * 6 5 4 9 9 C 1.46498 * 120.00254 * 185.05802 * 8 6 5 10 10 C 1.50696 * 109.47582 * 175.00248 * 9 8 6 11 11 H 1.08002 * 120.00009 * 4.98534 * 10 9 8 12 12 C 1.37875 * 120.00087 * 184.98862 * 10 9 8 13 13 N 1.31507 * 120.00158 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99705 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47334 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47002 * 120.00118 * 14 12 10 17 17 H 1.48496 * 109.47352 * 239.99699 * 14 12 10 18 18 N 1.38179 * 108.24712 * 0.02562 * 5 4 3 19 19 C 1.39099 * 125.75548 * 180.24773 * 18 5 4 20 20 N 1.32399 * 119.20099 * 172.90904 * 19 18 5 21 21 C 1.32269 * 120.75342 * 179.71942 * 20 19 18 22 22 C 1.38625 * 119.17768 * 0.54273 * 21 20 19 23 23 C 1.38618 * 118.53240 * 359.72785 * 22 21 20 24 24 N 1.32266 * 119.18386 * 0.02562 * 23 22 21 25 25 C 1.37389 * 108.48566 * 359.97438 * 18 5 4 26 26 C 1.46657 * 145.08551 * 180.02562 * 25 18 5 27 27 C 1.39673 * 133.47004 * 0.06323 * 26 25 18 28 28 C 1.36658 * 119.84040 * 179.97438 * 27 26 25 29 29 C 1.38770 * 120.46216 * 359.92047 * 28 27 26 30 30 C 1.37797 * 120.65176 * 0.02562 * 29 28 27 31 31 C 1.37966 * 125.02934 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47211 * 90.00147 * 1 2 3 33 33 H 1.09003 * 109.46624 * 210.00165 * 1 2 3 34 34 H 1.08998 * 109.46927 * 329.99793 * 1 2 3 35 35 H 1.08000 * 126.14766 * 359.95187 * 4 3 2 36 36 H 0.97002 * 119.99553 * 5.04538 * 8 6 5 37 37 H 1.09005 * 109.46596 * 295.00395 * 9 8 6 38 38 H 1.09001 * 109.47060 * 54.99619 * 9 8 6 39 39 H 0.97000 * 120.00295 * 180.02562 * 13 12 10 40 40 H 1.07994 * 120.40956 * 180.29581 * 21 20 19 41 41 H 1.07998 * 120.72635 * 179.75480 * 22 21 20 42 42 H 1.07998 * 120.40567 * 180.02562 * 23 22 21 43 43 H 1.07997 * 120.08638 * 359.92331 * 27 26 25 44 44 H 1.07993 * 119.77150 * 179.97438 * 28 27 26 45 45 H 1.08006 * 119.67473 * 180.02562 * 29 28 27 46 46 H 1.08003 * 120.06484 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2621 1.1371 0.0000 4 6 2.2374 2.5407 0.0010 5 6 3.5414 2.9823 0.0006 6 6 3.9741 4.3827 0.0019 7 8 5.1549 4.6550 -0.1123 8 7 3.0644 5.3689 0.1295 9 6 3.4815 6.7690 0.0199 10 6 2.2680 7.6607 0.0762 11 1 1.2933 7.2350 0.2636 12 6 2.4021 9.0200 -0.1115 13 7 3.5890 9.5385 -0.3392 14 14 0.8977 10.1252 -0.0423 15 1 -0.3090 9.3025 0.2266 16 1 1.0669 11.1243 1.0432 17 1 0.7392 10.8275 -1.3411 18 7 4.3722 1.8781 -0.0012 19 6 5.7629 1.9073 0.0028 20 7 6.4324 0.7737 0.1431 21 6 7.7550 0.7652 0.1456 22 6 8.4388 1.9634 0.0104 23 6 7.7061 3.1318 -0.1289 24 7 6.3850 3.0686 -0.1281 25 6 3.5929 0.7467 -0.0014 26 6 3.6021 -0.7199 -0.0022 27 6 4.6217 -1.6745 -0.0024 28 6 4.3080 -3.0045 -0.0028 29 6 2.9823 -3.4147 -0.0014 30 6 1.9608 -2.4898 -0.0001 31 6 2.2570 -1.1297 -0.0005 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.3542 3.1622 0.0016 36 1 2.1334 5.1516 0.2938 37 1 4.1512 7.0141 0.8443 38 1 4.0002 6.9205 -0.9268 39 1 3.6833 10.4949 -0.4709 40 1 8.2955 -0.1633 0.2557 41 1 9.5186 1.9859 0.0132 42 1 8.2079 4.0821 -0.2367 43 1 5.6556 -1.3623 -0.0030 44 1 5.0972 -3.7416 -0.0033 45 1 2.7488 -4.4692 -0.0013 46 1 0.9323 -2.8195 0.0005 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096037300.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:01 Heat of formation + Delta-G solvation = 152.747167 kcal Electronic energy + Delta-G solvation = -33318.155771 eV Core-core repulsion = 28982.792849 eV Total energy + Delta-G solvation = -4335.362922 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.144 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.47034 -41.92492 -40.69357 -39.45346 -37.55966 -36.08551 -34.85147 -34.57915 -33.90985 -33.01151 -31.34056 -30.88816 -30.03035 -28.52866 -27.23376 -25.59288 -25.40161 -25.10296 -23.77424 -22.79638 -21.94377 -21.10761 -20.89704 -19.88358 -18.79205 -18.25894 -17.74971 -17.31411 -17.14504 -17.05008 -16.88927 -16.53102 -16.16316 -16.10465 -15.85014 -15.78872 -15.38209 -15.05355 -14.82191 -14.69485 -14.54888 -14.49556 -14.18173 -13.83169 -13.77957 -13.48688 -13.27436 -13.21592 -12.90139 -12.73640 -12.42594 -12.27829 -12.11512 -12.09665 -11.97869 -11.76767 -11.42713 -10.95377 -10.90619 -10.78106 -10.45748 -9.82212 -9.72377 -9.45374 -8.70894 -8.33284 -8.26911 -6.42444 -0.69093 0.13473 0.22917 0.54915 0.91551 0.93550 1.44402 1.45440 1.58909 1.71806 1.73247 2.29803 2.37688 2.48822 2.82519 2.97664 3.03150 3.08495 3.22168 3.58721 3.70078 3.76008 3.79422 3.97681 4.15474 4.16261 4.21835 4.32788 4.38814 4.41256 4.53839 4.64868 4.67282 4.68607 4.77360 4.78813 5.05926 5.13707 5.18483 5.23812 5.28742 5.31994 5.50243 5.53918 5.64197 5.73900 5.78219 5.82661 5.87290 5.92189 6.18414 6.22937 6.45407 6.67635 6.93950 7.06101 7.26293 7.53958 8.85532 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.002790 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.062478 B =10034.326130 C =12814.307978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.483 5.483 3 C 0.043 3.957 4 C -0.106 4.106 5 C 0.003 3.997 6 C 0.546 3.454 7 O -0.515 6.515 8 N -0.698 5.698 9 C 0.277 3.723 10 C -0.553 4.553 11 H 0.083 0.917 12 C 0.005 3.995 13 N -0.930 5.930 14 Si 0.983 3.017 15 H -0.253 1.253 16 H -0.279 1.279 17 H -0.279 1.279 18 N -0.355 5.355 19 C 0.480 3.520 20 N -0.539 5.539 21 C 0.161 3.839 22 C -0.221 4.221 23 C 0.140 3.860 24 N -0.487 5.487 25 C 0.018 3.982 26 C -0.109 4.109 27 C -0.069 4.069 28 C -0.160 4.160 29 C -0.076 4.076 30 C -0.146 4.146 31 C 0.137 3.863 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.185 0.815 36 H 0.404 0.596 37 H -0.013 1.013 38 H -0.007 1.007 39 H 0.268 0.732 40 H 0.223 0.777 41 H 0.198 0.802 42 H 0.181 0.819 43 H 0.131 0.869 44 H 0.149 0.851 45 H 0.163 0.837 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 -29.050 1.212 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.172 5.172 3 C -0.063 4.063 4 C -0.135 4.135 5 C -0.107 4.107 6 C 0.332 3.668 7 O -0.390 6.390 8 N -0.350 5.350 9 C 0.155 3.845 10 C -0.590 4.590 11 H 0.101 0.899 12 C -0.195 4.195 13 N -0.569 5.569 14 Si 0.806 3.194 15 H -0.176 1.176 16 H -0.205 1.205 17 H -0.205 1.205 18 N -0.035 5.035 19 C 0.126 3.874 20 N -0.258 5.258 21 C -0.005 4.005 22 C -0.243 4.243 23 C -0.025 4.025 24 N -0.205 5.205 25 C -0.094 4.094 26 C -0.115 4.115 27 C -0.088 4.088 28 C -0.179 4.179 29 C -0.095 4.095 30 C -0.167 4.167 31 C 0.031 3.969 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.202 0.798 36 H 0.239 0.761 37 H 0.005 0.995 38 H 0.011 0.989 39 H 0.077 0.923 40 H 0.239 0.761 41 H 0.215 0.785 42 H 0.198 0.802 43 H 0.149 0.851 44 H 0.166 0.834 45 H 0.180 0.820 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.154 -28.566 1.083 28.587 hybrid contribution 0.349 1.525 0.003 1.564 sum 0.195 -27.041 1.085 27.064 Atomic orbital electron populations 1.22185 0.74278 1.05665 1.03997 1.43302 1.06326 1.00553 1.67000 1.17922 0.88668 0.89443 1.10317 1.20623 0.95205 0.90399 1.07267 1.20309 0.88604 0.87251 1.14575 1.17344 0.86519 0.84127 0.78852 1.91012 1.15921 1.83144 1.48956 1.45903 1.11102 1.06194 1.71831 1.18518 0.95468 0.76343 0.94180 1.21634 0.94186 0.92581 1.50639 0.89853 1.26026 0.99756 0.99763 0.93923 1.70138 1.25021 1.13246 1.48485 0.85133 0.78529 0.78016 0.77679 1.17605 1.20499 1.20485 1.39993 1.01173 1.04981 1.57329 1.19601 0.85375 0.87093 0.95306 1.67745 1.11833 1.28189 1.18014 1.23951 0.86963 1.00870 0.88761 1.23323 1.05028 0.93259 1.02675 1.23891 0.88001 1.01175 0.89448 1.69544 1.12556 1.23929 1.14495 1.19231 0.88632 0.88458 1.13110 1.18243 0.94462 0.86861 1.11965 1.20808 0.98787 0.92504 0.96664 1.20967 0.97889 0.94675 1.04361 1.21320 0.91507 1.00446 0.96253 1.20394 1.01711 0.87174 1.07398 1.18492 0.87743 0.89127 1.01565 0.90476 0.87773 0.89195 0.79751 0.76074 0.99537 0.98880 0.92305 0.76108 0.78516 0.80229 0.85126 0.83358 0.81972 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 11.03 127.77 1.41 2.54 16 2 N -0.48 -11.92 3.24 -529.84 -1.72 -13.64 16 3 C 0.04 1.37 7.50 38.66 0.29 1.66 16 4 C -0.11 -3.44 10.31 22.66 0.23 -3.21 16 5 C 0.00 0.11 6.83 40.19 0.27 0.38 16 6 C 0.55 25.60 7.76 86.42 0.67 26.27 16 7 O -0.52 -27.13 12.38 -4.39 -0.05 -27.19 16 8 N -0.70 -32.23 5.51 -470.92 -2.60 -34.83 16 9 C 0.28 15.61 5.43 85.63 0.47 16.08 16 10 C -0.55 -30.53 9.28 25.60 0.24 -30.29 16 11 H 0.08 4.18 7.61 -2.91 -0.02 4.16 16 12 C 0.00 0.27 5.46 84.66 0.46 0.73 16 13 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 14 Si 0.98 42.76 29.54 68.60 2.03 44.78 16 15 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 18 N -0.36 -14.21 3.00 -332.89 -1.00 -15.21 16 19 C 0.48 18.57 8.30 261.22 2.17 20.74 16 20 N -0.54 -16.50 7.72 -197.56 -1.52 -18.02 16 21 C 0.16 3.24 11.30 84.72 0.96 4.19 16 22 C -0.22 -4.23 10.17 22.45 0.23 -4.01 16 23 C 0.14 4.18 11.30 84.72 0.96 5.14 16 24 N -0.49 -19.75 5.51 -197.57 -1.09 -20.84 16 25 C 0.02 0.63 7.32 40.58 0.30 0.92 16 26 C -0.11 -3.29 6.29 -20.15 -0.13 -3.42 16 27 C -0.07 -1.72 9.77 22.25 0.22 -1.50 16 28 C -0.16 -2.79 9.98 22.03 0.22 -2.57 16 29 C -0.08 -1.09 10.01 22.29 0.22 -0.87 16 30 C -0.15 -2.47 9.90 22.39 0.22 -2.25 16 31 C 0.14 3.41 6.79 38.99 0.26 3.67 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 0.94 7.99 -2.39 -0.02 0.92 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.19 4.68 7.44 -2.91 -0.02 4.66 16 36 H 0.40 15.69 7.23 -92.71 -0.67 15.02 16 37 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.22 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.20 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.18 4.73 8.06 -2.91 -0.02 4.70 16 43 H 0.13 3.28 6.15 -2.91 -0.02 3.26 16 44 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 45 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 46 H 0.15 1.58 7.98 -2.91 -0.02 1.55 16 Total: -1.00 -87.27 391.79 4.38 -82.89 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.38 Total: 23.99 kcal Atomic # 6 Polarization: 24.54 SS G_CDS: 9.67 Total: 34.21 kcal Atomic # 7 Polarization: -151.05 SS G_CDS: -7.64 Total: -158.69 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.05 Total: -27.19 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -87.27 4.38 -82.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096037300.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.637 kcal (2) G-P(sol) polarization free energy of solvation -87.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds