Wall clock time and date at job start Tue Mar 31 2020 06:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86806 * 120.00316 * 2 1 4 4 H 1.48504 * 109.47061 * 240.00299 * 3 2 1 5 5 H 1.48498 * 109.46780 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47143 * 119.99952 * 3 2 1 7 7 C 1.40051 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00554 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99575 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00305 * 5.63211 * 9 7 2 11 11 N 1.34774 * 119.99988 * 185.63269 * 9 7 2 12 12 C 1.47199 * 121.09351 * 354.83560 * 11 9 7 13 13 C 1.53018 * 107.47313 * 121.84722 * 12 11 9 14 14 C 1.50870 * 111.40931 * 54.41481 * 13 12 11 15 15 C 1.50705 * 108.79274 * 185.36887 * 14 13 12 16 16 C 1.38232 * 119.99669 * 300.70056 * 15 14 13 17 17 C 1.38241 * 119.99777 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00077 * 359.97438 * 17 16 15 19 19 C 1.38239 * 119.99619 * 0.27387 * 18 17 16 20 20 C 1.38229 * 119.99870 * 120.68007 * 15 14 13 21 21 C 1.53336 * 113.24635 * 64.40891 * 14 13 12 22 22 N 1.46610 * 107.05661 * 212.12428 * 21 14 13 23 23 C 1.39672 * 111.07453 * 237.36045 * 22 21 14 24 24 C 1.38917 * 120.07462 * 323.33029 * 23 22 21 25 25 C 1.38098 * 119.92341 * 179.76317 * 24 23 22 26 26 C 1.38285 * 120.07570 * 0.51253 * 25 24 23 27 27 C 1.38287 * 120.15141 * 359.74147 * 26 25 24 28 28 C 1.38106 * 120.07304 * 359.97438 * 27 26 25 29 29 C 1.48058 * 108.25890 * 359.47105 * 22 21 14 30 30 C 1.54056 * 113.75398 * 306.67156 * 14 13 12 31 31 H 1.09003 * 112.69203 * 282.17231 * 30 14 13 32 32 C 1.46459 * 121.09673 * 174.81259 * 11 9 7 33 33 H 0.96995 * 119.99482 * 0.02562 * 1 2 3 34 34 H 1.08999 * 109.85263 * 2.35323 * 12 11 9 35 35 H 1.08996 * 109.91114 * 241.37445 * 12 11 9 36 36 H 1.09004 * 109.09148 * 293.91864 * 13 12 11 37 37 H 1.08995 * 109.08830 * 174.91341 * 13 12 11 38 38 H 1.07997 * 120.00592 * 359.97438 * 16 15 14 39 39 H 1.08001 * 119.99860 * 179.97438 * 17 16 15 40 40 H 1.07991 * 120.00311 * 180.02562 * 18 17 16 41 41 H 1.08006 * 119.99458 * 179.72410 * 19 18 17 42 42 H 1.08000 * 120.00270 * 0.02562 * 20 15 14 43 43 H 1.08997 * 110.06317 * 331.52010 * 21 14 13 44 44 H 1.09000 * 110.06515 * 93.03818 * 21 14 13 45 45 H 1.08003 * 120.03396 * 359.97438 * 24 23 22 46 46 H 1.08002 * 119.96058 * 180.24945 * 25 24 23 47 47 H 1.08001 * 119.92365 * 179.76538 * 26 25 24 48 48 H 1.07993 * 119.96241 * 179.97438 * 27 26 25 49 49 H 1.07997 * 120.03604 * 180.02562 * 28 27 26 50 50 H 1.08996 * 110.44948 * 266.19409 * 29 22 21 51 51 H 1.09006 * 110.44962 * 143.65566 * 29 22 21 52 52 H 1.09007 * 109.29957 * 356.13061 * 32 11 9 53 53 H 1.08995 * 109.30326 * 115.71554 * 32 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0946 1.6964 -1.2126 5 1 1.2759 2.7464 -0.0006 6 1 3.0945 1.6964 1.2124 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0626 -2.4830 -0.1035 11 7 1.9441 -3.6449 0.1135 12 6 3.4156 -3.6781 0.1262 13 6 3.8490 -4.3387 1.4366 14 6 3.2025 -5.6906 1.6119 15 6 3.5624 -6.2280 2.9732 16 6 4.8887 -6.4210 3.3114 17 6 5.2189 -6.9135 4.5602 18 6 4.2227 -7.2123 5.4709 19 6 2.8962 -7.0240 5.1306 20 6 2.5662 -6.5274 3.8835 21 6 3.6347 -6.7102 0.5514 22 7 2.4932 -7.6008 0.3207 23 6 2.8397 -8.9330 0.5580 24 6 4.1039 -9.3953 0.2146 25 6 4.4447 -10.7117 0.4551 26 6 3.5257 -11.5722 1.0272 27 6 2.2646 -11.1166 1.3654 28 6 1.9191 -9.7998 1.1331 29 6 1.3860 -7.1747 1.2065 30 6 1.6678 -5.6662 1.4808 31 1 1.1752 -5.2870 2.3762 32 6 1.2309 -4.9188 0.2293 33 1 -0.4849 0.8400 -0.0004 34 1 3.8092 -2.6629 0.0755 35 1 3.7812 -4.2595 -0.7202 36 1 3.5648 -3.6968 2.2706 37 1 4.9323 -4.4591 1.4339 38 1 5.6670 -6.1872 2.6002 39 1 6.2551 -7.0647 4.8244 40 1 4.4806 -7.5966 6.4466 41 1 2.1177 -7.2617 5.8406 42 1 1.5300 -6.3766 3.6191 43 1 3.8984 -6.1982 -0.3740 44 1 4.4839 -7.2896 0.9137 45 1 4.8204 -8.7250 -0.2367 46 1 5.4288 -11.0708 0.1921 47 1 3.7936 -12.6022 1.2107 48 1 1.5491 -11.7913 1.8116 49 1 0.9342 -9.4446 1.3978 50 1 1.4037 -7.7410 2.1376 51 1 0.4269 -7.2976 0.7032 52 1 0.1585 -4.7286 0.2745 53 1 1.4509 -5.5355 -0.6420 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096083378.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:36 Heat of formation + Delta-G solvation = 28.924889 kcal Electronic energy + Delta-G solvation = -35798.231334 eV Core-core repulsion = 31599.153851 eV Total energy + Delta-G solvation = -4199.077483 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.189 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.76338 -40.21372 -39.68648 -38.50737 -36.50987 -34.75103 -34.23793 -33.52187 -31.91767 -31.65329 -30.88190 -29.84680 -28.88535 -28.12905 -25.90526 -25.07075 -24.11147 -23.18189 -22.87657 -22.38124 -21.45142 -21.39802 -19.66833 -18.81667 -18.30577 -17.94119 -17.51218 -16.63476 -16.57259 -16.44291 -16.12385 -15.86645 -15.75875 -15.60899 -15.33549 -15.23396 -14.69989 -14.53246 -14.44199 -14.24303 -14.16935 -14.03712 -13.92390 -13.64051 -13.35109 -13.29122 -13.21210 -12.87952 -12.78315 -12.67886 -12.54061 -12.47251 -12.24169 -12.15795 -12.04921 -11.92380 -11.78016 -11.66465 -11.42670 -11.09988 -10.90887 -10.70697 -9.79670 -9.78062 -9.77281 -9.59305 -9.04425 -8.68820 -8.27905 -6.81860 0.47242 0.52437 0.53951 0.54522 1.39477 1.42978 1.54094 2.23686 2.47395 2.69380 2.82681 2.89089 3.09754 3.29980 3.45863 3.54362 3.72026 3.96586 3.99681 4.04555 4.13445 4.14403 4.15816 4.22565 4.27307 4.32749 4.34769 4.40821 4.48441 4.54371 4.61573 4.62145 4.62636 4.69653 4.71778 4.84699 4.85974 4.88341 4.93866 5.00318 5.02528 5.09372 5.11029 5.17934 5.19394 5.29927 5.37027 5.42214 5.56674 5.61324 5.64747 5.71024 5.72269 5.78925 5.91582 6.00205 6.14494 6.15462 6.38844 6.43882 6.89410 7.45716 8.49118 8.69032 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.002868 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.276415 B = 9760.112887 C =10753.131489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.029 3.971 3 Si 0.993 3.007 4 H -0.253 1.253 5 H -0.277 1.277 6 H -0.253 1.253 7 C -0.567 4.567 8 H 0.095 0.905 9 C 0.544 3.456 10 O -0.635 6.635 11 N -0.641 5.641 12 C 0.118 3.882 13 C -0.103 4.103 14 C -0.016 4.016 15 C -0.076 4.076 16 C -0.121 4.121 17 C -0.119 4.119 18 C -0.131 4.131 19 C -0.126 4.126 20 C -0.140 4.140 21 C 0.059 3.941 22 N -0.479 5.479 23 C 0.104 3.896 24 C -0.169 4.169 25 C -0.094 4.094 26 C -0.160 4.160 27 C -0.097 4.097 28 C -0.181 4.181 29 C 0.051 3.949 30 C -0.096 4.096 31 H 0.083 0.917 32 C 0.134 3.866 33 H 0.273 0.727 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.117 0.883 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.130 0.870 46 H 0.143 0.857 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.122 0.878 50 H 0.076 0.924 51 H 0.082 0.918 52 H 0.043 0.957 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.697 -20.686 8.327 26.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.177 1.177 5 H -0.202 1.202 6 H -0.177 1.177 7 C -0.603 4.603 8 H 0.113 0.887 9 C 0.350 3.650 10 O -0.522 6.522 11 N -0.376 5.376 12 C -0.005 4.005 13 C -0.141 4.141 14 C -0.017 4.017 15 C -0.076 4.076 16 C -0.139 4.139 17 C -0.137 4.137 18 C -0.148 4.148 19 C -0.144 4.144 20 C -0.157 4.157 21 C -0.066 4.066 22 N -0.192 5.192 23 C 0.005 3.995 24 C -0.190 4.190 25 C -0.113 4.113 26 C -0.179 4.179 27 C -0.116 4.116 28 C -0.201 4.201 29 C -0.075 4.075 30 C -0.116 4.116 31 H 0.101 0.899 32 C 0.010 3.990 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.118 0.882 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.135 0.865 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.147 0.853 46 H 0.161 0.839 47 H 0.158 0.842 48 H 0.155 0.845 49 H 0.140 0.860 50 H 0.094 0.906 51 H 0.100 0.900 52 H 0.062 0.938 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.698 -20.475 7.716 25.815 hybrid contribution -0.466 0.945 0.477 1.157 sum 13.232 -19.530 8.193 24.973 Atomic orbital electron populations 1.70193 1.09579 1.28832 1.36818 1.26980 0.95450 1.04913 0.91256 0.85143 0.78288 0.74954 0.80396 1.17690 1.20214 1.17658 1.21453 0.94780 0.89688 1.54404 0.88738 1.18629 0.86462 0.84127 0.75809 1.90537 1.16873 1.87403 1.57419 1.47950 1.06606 1.05228 1.77838 1.21690 0.80098 1.01837 0.96837 1.21292 1.01156 0.93860 0.97841 1.19732 0.94064 0.95302 0.92594 1.19845 0.94180 0.98811 0.94761 1.21160 0.95284 0.99798 0.97672 1.21415 1.00453 0.98492 0.93360 1.21433 0.92673 1.00278 1.00452 1.21363 0.97491 0.99310 0.96229 1.21360 0.99473 1.00348 0.94553 1.22887 0.92250 0.93106 0.98384 1.60372 1.08134 1.01231 1.49426 1.19341 0.94340 0.90072 0.95718 1.21038 0.95251 0.97499 1.05168 1.21271 1.00268 0.92592 0.97152 1.21336 0.93920 1.00805 1.01805 1.21243 0.97229 0.94778 0.98313 1.21155 1.00126 0.95049 1.03806 1.23524 0.94590 0.93757 0.95645 1.22525 0.96087 0.94872 0.98150 0.89900 1.20866 0.96341 0.85089 0.96660 0.91748 0.89549 0.91467 0.93212 0.88192 0.84683 0.83844 0.84156 0.84992 0.86480 0.89738 0.89487 0.85264 0.83920 0.84194 0.84476 0.86019 0.90572 0.89985 0.93815 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.12 11.84 21.84 0.26 -50.86 16 2 C 0.03 1.61 5.50 85.31 0.47 2.08 16 3 Si 0.99 40.93 29.56 68.60 2.03 42.95 16 4 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.57 -31.94 8.90 24.83 0.22 -31.72 16 8 H 0.09 4.70 5.67 -2.91 -0.02 4.68 16 9 C 0.54 31.94 7.63 86.36 0.66 32.60 16 10 O -0.63 -43.47 14.49 -4.30 -0.06 -43.53 16 11 N -0.64 -29.35 2.93 -826.79 -2.42 -31.78 16 12 C 0.12 4.14 6.15 86.25 0.53 4.67 16 13 C -0.10 -2.93 4.54 29.91 0.14 -2.79 16 14 C -0.02 -0.42 0.46 -53.15 -0.02 -0.45 16 15 C -0.08 -1.84 4.33 -19.87 -0.09 -1.93 16 16 C -0.12 -2.47 8.38 22.27 0.19 -2.28 16 17 C -0.12 -2.14 10.05 22.27 0.22 -1.91 16 18 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 19 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 20 C -0.14 -3.45 7.75 22.27 0.17 -3.28 16 21 C 0.06 1.42 4.61 86.47 0.40 1.82 16 22 N -0.48 -12.43 4.76 -686.66 -3.27 -15.70 16 23 C 0.10 2.49 5.77 38.22 0.22 2.71 16 24 C -0.17 -3.51 8.58 22.40 0.19 -3.32 16 25 C -0.09 -1.63 10.04 22.25 0.22 -1.41 16 26 C -0.16 -2.67 10.04 22.29 0.22 -2.44 16 27 C -0.10 -1.80 10.04 22.25 0.22 -1.58 16 28 C -0.18 -4.05 8.67 22.40 0.19 -3.85 16 29 C 0.05 1.37 4.04 87.08 0.35 1.72 16 30 C -0.10 -3.06 2.65 -9.71 -0.03 -3.08 16 31 H 0.08 2.85 6.30 -2.39 -0.02 2.84 16 32 C 0.13 5.47 5.33 86.11 0.46 5.93 16 33 H 0.27 15.40 8.29 -92.71 -0.77 14.63 16 34 H 0.09 3.19 5.38 -2.39 -0.01 3.18 16 35 H 0.07 2.07 6.84 -2.39 -0.02 2.06 16 36 H 0.05 1.66 8.12 -2.38 -0.02 1.64 16 37 H 0.10 2.15 7.39 -2.39 -0.02 2.13 16 38 H 0.14 2.25 7.46 -2.91 -0.02 2.23 16 39 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.14 1.85 8.06 -2.92 -0.02 1.82 16 41 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 42 H 0.12 3.04 5.01 -2.91 -0.01 3.02 16 43 H 0.08 2.09 6.50 -2.39 -0.02 2.07 16 44 H 0.09 1.82 4.87 -2.39 -0.01 1.81 16 45 H 0.13 2.43 6.79 -2.91 -0.02 2.41 16 46 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 47 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 48 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 49 H 0.12 2.65 6.44 -2.91 -0.02 2.63 16 50 H 0.08 1.88 4.76 -2.39 -0.01 1.87 16 51 H 0.08 2.26 7.97 -2.38 -0.02 2.24 16 52 H 0.04 2.10 7.02 -2.38 -0.02 2.08 16 53 H 0.06 2.29 7.13 -2.39 -0.02 2.27 16 Total: -1.00 -78.56 398.73 2.88 -75.68 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: 0.95 Total: 36.35 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 5.40 Total: -13.11 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -5.43 Total: -98.34 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -0.06 Total: -43.53 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Total: -78.56 2.88 -75.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096083378.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.607 kcal (2) G-P(sol) polarization free energy of solvation -78.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds