Wall clock time and date at job start Tue Mar 31 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39668 * 126.07169 * 2 1 4 4 C 1.38402 * 105.36360 * 179.97438 * 3 2 1 5 5 C 1.47157 * 126.88718 * 180.25978 * 4 3 2 6 6 O 1.21636 * 119.99884 * 6.29570 * 5 4 3 7 7 N 1.34776 * 120.00217 * 186.29370 * 5 4 3 8 8 C 1.47490 * 125.66345 * 4.60651 * 7 5 4 9 9 C 1.55273 * 104.78988 * 155.91995 * 8 7 5 10 10 C 1.54435 * 101.42342 * 36.59149 * 9 8 7 11 11 C 1.47209 * 125.66480 * 184.91643 * 7 5 4 12 12 C 1.49680 * 110.53432 * 84.22742 * 10 9 8 13 13 O 1.21271 * 118.76440 * 290.49355 * 12 10 9 14 14 N 1.33730 * 122.47366 * 110.46767 * 12 10 9 15 15 C 1.46499 * 117.89651 * 184.60707 * 14 12 10 16 16 C 1.52996 * 109.47369 * 119.99827 * 15 14 12 17 17 C 1.53001 * 109.47033 * 240.00096 * 15 14 12 18 18 C 1.45645 * 124.21221 * 4.62631 * 14 12 10 19 19 C 1.52940 * 111.15077 * 336.93884 * 18 14 12 20 20 N 1.46210 * 110.15623 * 206.57823 * 10 9 8 21 21 C 1.36944 * 121.40871 * 98.43854 * 20 10 9 22 22 H 1.07992 * 120.00132 * 323.93046 * 21 20 10 23 23 C 1.38814 * 119.99554 * 143.93329 * 21 20 10 24 24 N 1.31618 * 120.00511 * 348.18839 * 23 21 20 25 25 Si 1.86805 * 119.99491 * 168.19250 * 23 21 20 26 26 H 1.48501 * 109.47127 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47159 * 119.99723 * 25 23 21 28 28 H 1.48506 * 109.46775 * 239.99655 * 25 23 21 29 29 N 1.36604 * 106.22965 * 0.02562 * 4 3 2 30 30 H 0.96997 * 125.18759 * 180.02562 * 29 4 3 31 31 N 1.28441 * 109.61714 * 359.97438 * 29 4 3 32 32 H 1.09003 * 109.46937 * 269.97312 * 1 2 3 33 33 H 1.08996 * 109.47066 * 29.97101 * 1 2 3 34 34 H 1.08999 * 109.47013 * 149.97605 * 1 2 3 35 35 H 1.08001 * 127.31736 * 0.04228 * 3 2 1 36 36 H 1.08992 * 110.35385 * 274.87553 * 8 7 5 37 37 H 1.08997 * 110.35124 * 37.16162 * 8 7 5 38 38 H 1.08998 * 111.21974 * 278.49857 * 9 8 7 39 39 H 1.09002 * 110.94072 * 154.56320 * 9 8 7 40 40 H 1.09002 * 109.91493 * 300.91620 * 11 7 5 41 41 H 1.09002 * 109.91376 * 62.19203 * 11 7 5 42 42 H 1.09000 * 109.46821 * 0.02562 * 15 14 12 43 43 H 1.09000 * 109.46851 * 60.00383 * 16 15 14 44 44 H 1.09003 * 109.46787 * 180.02562 * 16 15 14 45 45 H 1.08997 * 109.47670 * 299.99992 * 16 15 14 46 46 H 1.09003 * 109.47142 * 179.97438 * 17 15 14 47 47 H 1.09000 * 109.47396 * 299.99745 * 17 15 14 48 48 H 1.09002 * 109.46994 * 60.00236 * 17 15 14 49 49 H 1.09005 * 109.14084 * 97.36347 * 18 14 12 50 50 H 1.08997 * 109.14812 * 216.55994 * 18 14 12 51 51 H 1.09002 * 109.71001 * 166.83740 * 19 18 14 52 52 H 1.09003 * 109.70374 * 287.45155 * 19 18 14 53 53 H 0.97001 * 119.99759 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1289 0.0000 4 6 3.6240 0.6395 0.0006 5 6 4.8664 1.4281 0.0062 6 8 4.8185 2.6376 0.1264 7 7 6.0574 0.8103 -0.1219 8 6 6.2567 -0.6299 -0.3700 9 6 7.6563 -0.7274 -1.0353 10 6 8.4319 0.3732 -0.2790 11 6 7.3753 1.4597 -0.0310 12 6 8.9710 -0.1576 1.0126 13 8 8.1932 -0.4239 1.9041 14 7 10.2780 -0.3497 1.2203 15 6 10.6876 -0.9697 2.4828 16 6 11.4389 -2.2704 2.1922 17 6 11.6031 -0.0119 3.2479 18 6 11.3206 0.0182 0.2722 19 6 10.7666 0.1060 -1.1507 20 7 9.5171 0.8881 -1.1125 21 6 9.3791 2.0479 -1.8276 22 1 8.4278 2.2970 -2.2741 23 6 10.4619 2.9032 -1.9786 24 7 11.5458 2.7273 -1.2528 25 14 10.3807 4.3040 -3.2118 26 1 9.0632 4.2848 -3.8967 27 1 10.5519 5.5978 -2.5033 28 1 11.4627 4.1426 -4.2161 29 7 3.5173 -0.7224 0.0003 30 1 4.2640 -1.3415 0.0010 31 7 2.2775 -1.0578 0.0002 32 1 -0.3633 -0.0005 1.0277 33 1 -0.3633 0.8902 -0.5134 34 1 -0.3633 -0.8898 -0.5142 35 1 2.0207 2.1639 0.0006 36 1 6.2416 -1.1821 0.5696 37 1 5.4893 -1.0080 -1.0453 38 1 7.6027 -0.5057 -2.1012 39 1 8.1016 -1.7075 -0.8640 40 1 7.4586 2.2384 -0.7892 41 1 7.5101 1.8888 0.9619 42 1 9.8047 -1.1871 3.0840 43 1 12.3218 -2.0534 1.5908 44 1 11.7432 -2.7319 3.1316 45 1 10.7868 -2.9528 1.6471 46 1 11.9075 -0.4730 4.1875 47 1 12.4859 0.2051 2.6466 48 1 11.0677 0.9147 3.4551 49 1 11.7352 0.9860 0.5546 50 1 12.1112 -0.7315 0.3014 51 1 11.4909 0.6015 -1.7973 52 1 10.5616 -0.8960 -1.5277 53 1 12.3022 3.3253 -1.3581 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096229648.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:00 Heat of formation + Delta-G solvation = 36.359294 kcal Electronic energy + Delta-G solvation = -36962.454364 eV Core-core repulsion = 32450.568660 eV Total energy + Delta-G solvation = -4511.885704 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 375.206 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.69261 -42.15743 -40.52618 -38.72574 -37.87232 -36.54271 -34.30812 -33.92085 -32.94746 -31.98894 -31.44439 -30.66598 -29.17279 -28.41437 -28.10476 -27.07992 -25.23472 -24.13676 -23.73775 -23.17370 -21.78863 -21.38557 -21.21883 -19.56500 -19.03559 -18.57698 -18.13665 -17.43516 -17.38912 -17.05707 -16.95482 -16.43798 -16.30178 -16.13199 -15.49753 -15.29399 -14.97330 -14.86306 -14.73688 -14.66840 -14.29643 -14.12682 -13.97255 -13.88438 -13.72086 -13.65044 -13.36613 -13.26647 -13.19956 -13.15045 -12.96119 -12.82813 -12.72851 -12.55191 -12.42181 -12.26054 -12.08178 -12.05174 -11.89719 -11.73203 -11.60774 -11.36157 -10.81106 -10.52874 -10.34911 -10.14881 -9.84525 -9.56466 -8.61863 -7.96600 -5.52883 0.07271 1.43266 1.46036 1.47275 1.51041 1.57570 1.62148 1.82181 1.99098 2.09494 2.44922 3.13653 3.20075 3.33369 3.45725 3.53019 3.56544 3.69100 3.99697 4.02873 4.03773 4.15978 4.18392 4.22955 4.27075 4.34459 4.40096 4.53573 4.64886 4.69289 4.69654 4.72397 4.76807 4.78062 4.89478 4.91724 4.92287 4.94112 4.99642 5.03457 5.09262 5.11582 5.26031 5.30536 5.37317 5.51501 5.51606 5.65133 5.69115 5.87898 6.20897 6.32476 6.54044 6.73360 6.92201 7.04953 7.17184 7.64126 8.22067 9.07916 Molecular weight = 375.21amu Principal moments of inertia in cm(-1) A = 0.008820 B = 0.003475 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3173.881894 B = 8055.399439 C =10366.905268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.024 3.976 3 C -0.159 4.159 4 C -0.041 4.041 5 C 0.598 3.402 6 O -0.566 6.566 7 N -0.603 5.603 8 C 0.089 3.911 9 C -0.118 4.118 10 C 0.170 3.830 11 C 0.137 3.863 12 C 0.517 3.483 13 O -0.586 6.586 14 N -0.585 5.585 15 C 0.111 3.889 16 C -0.148 4.148 17 C -0.150 4.150 18 C 0.109 3.891 19 C 0.156 3.844 20 N -0.581 5.581 21 C -0.268 4.268 22 H 0.060 0.940 23 C -0.015 4.015 24 N -0.905 5.905 25 Si 0.955 3.045 26 H -0.277 1.277 27 H -0.298 1.298 28 H -0.282 1.282 29 N -0.373 5.373 30 H 0.451 0.549 31 N -0.281 5.281 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.172 0.828 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.034 0.966 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.054 0.946 46 H 0.089 0.911 47 H 0.061 0.939 48 H 0.028 0.972 49 H 0.057 0.943 50 H 0.088 0.912 51 H 0.083 0.917 52 H 0.038 0.962 53 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 -12.791 2.543 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.134 4.134 3 C -0.189 4.189 4 C -0.170 4.170 5 C 0.386 3.614 6 O -0.444 6.444 7 N -0.336 5.336 8 C -0.033 4.033 9 C -0.158 4.158 10 C 0.077 3.923 11 C 0.014 3.986 12 C 0.305 3.695 13 O -0.468 6.468 14 N -0.315 5.315 15 C 0.009 3.991 16 C -0.206 4.206 17 C -0.208 4.208 18 C -0.015 4.015 19 C 0.031 3.969 20 N -0.305 5.305 21 C -0.397 4.397 22 H 0.077 0.923 23 C -0.214 4.214 24 N -0.547 5.547 25 Si 0.784 3.216 26 H -0.202 1.202 27 H -0.225 1.225 28 H -0.208 1.208 29 N -0.095 5.095 30 H 0.303 0.697 31 N -0.115 5.115 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.190 0.810 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.073 0.927 46 H 0.108 0.892 47 H 0.080 0.920 48 H 0.048 0.952 49 H 0.075 0.925 50 H 0.106 0.894 51 H 0.102 0.898 52 H 0.056 0.944 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.682 -13.271 3.036 15.632 hybrid contribution 1.070 2.059 -0.367 2.349 sum -6.612 -11.212 2.669 13.287 Atomic orbital electron populations 1.20263 0.83406 1.04597 1.04089 1.22680 0.98962 0.87584 1.04158 1.22333 0.89280 1.01597 1.05648 1.21448 0.95384 0.85299 1.14822 1.16959 0.81365 0.86251 0.76797 1.90806 1.86600 1.14550 1.52427 1.48361 1.04971 1.10573 1.69651 1.22817 0.98967 0.80519 1.01024 1.23119 0.92646 0.99480 1.00571 1.20470 0.89870 0.93575 0.88342 1.21685 0.80339 0.95958 1.00637 1.20486 0.82674 0.76963 0.89423 1.90571 1.56777 1.54543 1.44894 1.47527 1.05725 1.59010 1.19267 1.21316 0.98636 0.93991 0.85195 1.22043 1.00274 0.94965 1.03270 1.22034 0.99262 0.98510 1.01033 1.21848 0.89458 1.00200 0.89947 1.21166 0.88424 0.93069 0.94257 1.44064 1.11489 1.24781 1.50120 1.19003 0.97509 0.97477 1.25756 0.92287 1.25724 0.97580 0.98647 0.99465 1.69991 1.05658 1.39264 1.39783 0.85424 0.77658 0.79437 0.79116 1.20159 1.22482 1.20759 1.44287 1.06987 1.05014 1.53222 0.69704 1.73081 0.89906 1.28191 1.20350 0.89459 0.88721 0.89980 0.81026 0.89422 0.88395 0.88829 0.88170 0.89732 0.94715 0.89923 0.91429 0.89406 0.92689 0.89183 0.92003 0.95236 0.92495 0.89373 0.89833 0.94449 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.45 71.24 0.74 -0.17 16 2 C 0.02 0.55 7.22 43.05 0.31 0.86 16 3 C -0.16 -4.32 10.79 22.65 0.24 -4.07 16 4 C -0.04 -1.26 6.91 40.78 0.28 -0.98 16 5 C 0.60 22.73 7.83 86.59 0.68 23.41 16 6 O -0.57 -25.69 17.26 -4.15 -0.07 -25.76 16 7 N -0.60 -22.09 3.33 -816.07 -2.72 -24.81 16 8 C 0.09 2.49 4.83 86.97 0.42 2.91 16 9 C -0.12 -3.58 6.18 31.86 0.20 -3.38 16 10 C 0.17 6.66 0.89 3.27 0.00 6.67 16 11 C 0.14 5.95 5.62 86.44 0.49 6.44 16 12 C 0.52 20.32 6.24 87.50 0.55 20.87 16 13 O -0.59 -24.55 14.28 -3.00 -0.04 -24.59 16 14 N -0.59 -20.53 2.73 -802.98 -2.19 -22.72 16 15 C 0.11 3.21 3.14 44.99 0.14 3.35 16 16 C -0.15 -3.10 9.12 71.98 0.66 -2.44 16 17 C -0.15 -4.03 9.16 71.98 0.66 -3.37 16 18 C 0.11 3.85 5.42 86.52 0.47 4.31 16 19 C 0.16 6.03 5.63 86.18 0.49 6.52 16 20 N -0.58 -25.18 2.62 -655.40 -1.72 -26.90 16 21 C -0.27 -13.13 8.15 84.03 0.68 -12.45 16 22 H 0.06 3.01 6.66 -2.91 -0.02 2.99 16 23 C -0.01 -0.73 5.04 84.86 0.43 -0.31 16 24 N -0.90 -45.72 10.49 21.65 0.23 -45.50 16 25 Si 0.95 41.97 29.57 68.60 2.03 44.00 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 27 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 28 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 29 N -0.37 -9.57 6.27 -48.00 -0.30 -9.87 16 30 H 0.45 9.65 5.37 -220.01 -1.18 8.47 16 31 N -0.28 -7.09 12.14 -47.49 -0.58 -7.67 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.17 4.25 8.06 -2.91 -0.02 4.22 16 36 H 0.09 2.38 7.16 -2.39 -0.02 2.36 16 37 H 0.10 2.12 6.14 -2.39 -0.01 2.11 16 38 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.10 2.61 8.00 -2.39 -0.02 2.60 16 40 H 0.08 4.11 5.37 -2.39 -0.01 4.09 16 41 H 0.03 1.69 7.73 -2.39 -0.02 1.67 16 42 H 0.08 2.66 6.63 -2.39 -0.02 2.65 16 43 H 0.07 1.33 6.52 -2.39 -0.02 1.32 16 44 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.06 1.63 7.51 -2.39 -0.02 1.61 16 48 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.06 2.41 7.20 -2.38 -0.02 2.39 16 50 H 0.09 2.51 6.19 -2.39 -0.01 2.50 16 51 H 0.08 3.64 6.23 -2.39 -0.01 3.63 16 52 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 53 H 0.26 12.66 8.31 -92.71 -0.77 11.89 16 Total: -1.00 -66.22 408.98 1.84 -64.38 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -0.23 Total: 31.27 kcal Atomic # 6 Polarization: 40.73 SS G_CDS: 7.43 Total: 48.16 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -7.28 Total: -137.46 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.11 Total: -50.35 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -66.22 1.84 -64.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096229648.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.741 kcal (2) G-P(sol) polarization free energy of solvation -66.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds