Wall clock time and date at job start Tue Mar 31 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39671 * 126.06962 * 2 1 4 4 C 1.38410 * 105.35662 * 180.02562 * 3 2 1 5 5 C 1.47169 * 126.88224 * 180.02562 * 4 3 2 6 6 O 1.21629 * 120.00029 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99641 * 180.02562 * 5 4 3 8 8 C 1.47087 * 125.63125 * 359.97438 * 7 5 4 9 9 C 1.54479 * 107.30269 * 179.05420 * 8 7 5 10 10 C 1.54257 * 102.86523 * 338.59762 * 9 8 7 11 11 C 1.47592 * 125.62378 * 180.02562 * 7 5 4 12 12 C 1.49527 * 110.93417 * 275.85827 * 10 9 8 13 13 O 1.21287 * 118.79939 * 45.35158 * 12 10 9 14 14 N 1.33784 * 122.39356 * 225.32846 * 12 10 9 15 15 C 1.46498 * 117.93469 * 184.66442 * 14 12 10 16 16 C 1.52999 * 109.46828 * 239.99767 * 15 14 12 17 17 C 1.53000 * 109.47121 * 119.99867 * 15 14 12 18 18 C 1.45650 * 124.13220 * 4.93835 * 14 12 10 19 19 C 1.53160 * 111.08587 * 336.26645 * 18 14 12 20 20 N 1.46053 * 110.58729 * 152.58817 * 10 9 8 21 21 C 1.36934 * 121.42064 * 343.87544 * 20 10 9 22 22 H 1.08007 * 119.99601 * 33.04623 * 21 20 10 23 23 C 1.38810 * 120.00357 * 213.04789 * 21 20 10 24 24 N 1.31615 * 119.99824 * 11.64446 * 23 21 20 25 25 Si 1.86801 * 120.00053 * 191.63937 * 23 21 20 26 26 H 1.48504 * 109.47000 * 59.99830 * 25 23 21 27 27 H 1.48495 * 109.47263 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47070 * 300.00228 * 25 23 21 29 29 N 1.36594 * 106.23448 * 0.26800 * 4 3 2 30 30 H 0.96999 * 125.19588 * 179.73773 * 29 4 3 31 31 N 1.28454 * 109.61670 * 359.54704 * 29 4 3 32 32 H 1.08992 * 109.47193 * 89.99191 * 1 2 3 33 33 H 1.08996 * 109.47272 * 209.99652 * 1 2 3 34 34 H 1.09002 * 109.46923 * 329.99980 * 1 2 3 35 35 H 1.08001 * 127.32635 * 0.06201 * 3 2 1 36 36 H 1.09000 * 109.87845 * 59.62769 * 8 7 5 37 37 H 1.08997 * 109.87685 * 298.47714 * 8 7 5 38 38 H 1.08996 * 110.73692 * 220.25335 * 9 8 7 39 39 H 1.09000 * 110.89000 * 97.01252 * 9 8 7 40 40 H 1.09001 * 110.37207 * 84.34391 * 11 7 5 41 41 H 1.08997 * 110.37962 * 321.99311 * 11 7 5 42 42 H 1.08997 * 109.46736 * 359.97438 * 15 14 12 43 43 H 1.08997 * 109.47500 * 299.99579 * 16 15 14 44 44 H 1.08998 * 109.47181 * 60.00276 * 16 15 14 45 45 H 1.09006 * 109.46789 * 180.02562 * 16 15 14 46 46 H 1.08997 * 109.47359 * 60.00328 * 17 15 14 47 47 H 1.09006 * 109.47141 * 180.02562 * 17 15 14 48 48 H 1.08997 * 109.47308 * 299.99658 * 17 15 14 49 49 H 1.09001 * 109.13339 * 96.88647 * 18 14 12 50 50 H 1.09006 * 109.13151 * 215.99514 * 18 14 12 51 51 H 1.09000 * 109.90747 * 287.86152 * 19 18 14 52 52 H 1.09001 * 109.62806 * 167.16572 * 19 18 14 53 53 H 0.97000 * 119.99785 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6240 0.6394 -0.0006 5 6 4.8665 1.4281 -0.0003 6 8 4.8155 2.6433 0.0010 7 7 6.0609 0.8037 -0.0015 8 6 6.2664 -0.6527 -0.0026 9 6 7.7908 -0.9016 -0.0281 10 6 8.3459 0.4240 -0.5886 11 6 7.3785 1.4687 -0.0008 12 6 8.3020 0.4322 -2.0832 13 8 7.2948 0.0496 -2.6402 14 7 9.3329 0.8466 -2.8283 15 6 9.1480 0.9121 -4.2801 16 6 10.1599 -0.0086 -4.9651 17 6 9.3621 2.3500 -4.7571 18 6 10.6295 1.2314 -2.2876 19 6 10.5094 1.6649 -0.8236 20 7 9.7065 0.6542 -0.1100 21 6 10.2153 -0.0391 0.9556 22 1 9.9105 -1.0603 1.1305 23 6 11.1228 0.5706 1.8109 24 7 11.3217 1.8698 1.7417 25 14 12.0615 -0.4528 3.0602 26 1 12.8689 -1.4791 2.3530 27 1 12.9605 0.4290 3.8472 28 1 11.1010 -1.1219 3.9740 29 7 3.5173 -0.7223 -0.0071 30 1 4.2639 -1.3416 -0.0126 31 7 2.2774 -1.0578 -0.0006 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 2.0207 2.1639 0.0009 36 1 5.8044 -1.0915 -0.8870 37 1 5.8348 -1.0886 0.8984 38 1 8.0352 -1.7326 -0.6897 39 1 8.1715 -1.0852 0.9766 40 1 7.6722 1.7280 1.0163 41 1 7.3545 2.3593 -0.6287 42 1 8.1371 0.5919 -4.5323 43 1 11.1710 0.3112 -4.7129 44 1 10.0074 -1.0329 -4.6252 45 1 10.0226 0.0405 -6.0453 46 1 10.3731 2.6697 -4.5050 47 1 9.2240 2.3988 -5.8373 48 1 8.6412 3.0059 -4.2692 49 1 11.3117 0.3842 -2.3583 50 1 11.0288 2.0601 -2.8725 51 1 10.0167 2.6353 -0.7631 52 1 11.5020 1.7276 -0.3777 53 1 11.9561 2.2958 2.3391 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096229649.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:04 Heat of formation + Delta-G solvation = 34.387741 kcal Electronic energy + Delta-G solvation = -37004.927591 eV Core-core repulsion = 32492.956394 eV Total energy + Delta-G solvation = -4511.971197 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 375.206 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.68355 -42.18985 -40.52300 -38.76656 -37.90633 -36.56742 -34.30757 -33.94656 -33.04651 -32.00278 -31.42033 -30.50430 -29.39411 -28.58221 -28.12115 -26.67788 -25.69789 -24.13359 -23.61100 -23.15634 -21.78697 -21.42936 -21.25901 -19.56104 -19.06703 -18.60039 -18.01848 -17.54560 -17.38480 -17.12948 -16.70891 -16.45678 -16.35487 -16.25507 -15.42377 -15.28715 -15.23993 -14.98776 -14.76250 -14.62995 -14.34487 -14.25549 -13.97378 -13.90451 -13.74757 -13.64651 -13.54184 -13.26087 -13.24407 -13.07263 -12.83904 -12.80524 -12.66420 -12.54963 -12.31506 -12.23681 -12.17258 -11.97579 -11.90177 -11.87913 -11.62792 -11.36423 -10.70254 -10.54101 -10.35272 -10.15269 -9.88263 -9.64486 -8.76924 -7.93202 -5.48738 0.07411 1.46120 1.48684 1.53180 1.53484 1.56801 1.60414 1.84124 1.99350 2.02976 2.47057 3.14755 3.24775 3.26893 3.48905 3.52550 3.56845 3.75972 3.95691 3.99679 4.04512 4.12874 4.14708 4.16799 4.24597 4.33960 4.35803 4.49044 4.50770 4.58831 4.66714 4.68854 4.71878 4.75299 4.88860 4.89351 4.91841 4.93636 4.98784 4.99432 5.09933 5.12831 5.19213 5.27012 5.32206 5.44920 5.51609 5.63675 5.66250 5.88498 6.20631 6.30649 6.44976 6.72612 6.92472 7.01556 7.12923 7.66318 8.23363 9.13121 Molecular weight = 375.21amu Principal moments of inertia in cm(-1) A = 0.008401 B = 0.003517 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3332.151412 B = 7958.485490 C =10109.103464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.023 3.977 3 C -0.161 4.161 4 C -0.042 4.042 5 C 0.598 3.402 6 O -0.569 6.569 7 N -0.601 5.601 8 C 0.095 3.905 9 C -0.103 4.103 10 C 0.168 3.832 11 C 0.123 3.877 12 C 0.524 3.476 13 O -0.576 6.576 14 N -0.590 5.590 15 C 0.112 3.888 16 C -0.147 4.147 17 C -0.154 4.154 18 C 0.100 3.900 19 C 0.154 3.846 20 N -0.577 5.577 21 C -0.265 4.265 22 H 0.084 0.916 23 C -0.027 4.027 24 N -0.923 5.923 25 Si 0.965 3.035 26 H -0.274 1.274 27 H -0.300 1.300 28 H -0.277 1.277 29 N -0.373 5.373 30 H 0.451 0.549 31 N -0.282 5.282 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.173 0.827 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.037 0.963 49 H 0.066 0.934 50 H 0.093 0.907 51 H 0.009 0.991 52 H 0.093 0.907 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.786 -5.339 -8.648 13.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.135 4.135 3 C -0.190 4.190 4 C -0.170 4.170 5 C 0.387 3.613 6 O -0.447 6.447 7 N -0.333 5.333 8 C -0.028 4.028 9 C -0.142 4.142 10 C 0.074 3.926 11 C -0.003 4.003 12 C 0.312 3.688 13 O -0.457 6.457 14 N -0.320 5.320 15 C 0.010 3.990 16 C -0.205 4.205 17 C -0.211 4.211 18 C -0.024 4.024 19 C 0.028 3.972 20 N -0.299 5.299 21 C -0.394 4.394 22 H 0.102 0.898 23 C -0.224 4.224 24 N -0.567 5.567 25 Si 0.793 3.207 26 H -0.200 1.200 27 H -0.226 1.226 28 H -0.203 1.203 29 N -0.095 5.095 30 H 0.302 0.698 31 N -0.117 5.117 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.190 0.810 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.108 0.892 48 H 0.056 0.944 49 H 0.084 0.916 50 H 0.111 0.889 51 H 0.027 0.973 52 H 0.111 0.889 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.212 -5.914 -8.813 14.054 hybrid contribution 1.415 0.793 0.974 1.892 sum -7.797 -5.121 -7.839 12.185 Atomic orbital electron populations 1.20259 0.83366 1.04588 1.04096 1.22693 0.98986 0.87600 1.04176 1.22328 0.89274 1.01567 1.05844 1.21503 0.95536 0.85318 1.14672 1.16968 0.81478 0.86339 0.76506 1.90783 1.86743 1.14131 1.53070 1.48381 1.05037 1.08682 1.71213 1.22415 0.98616 0.79686 1.02066 1.22585 0.91710 0.95765 1.04140 1.20457 0.87271 0.95808 0.89058 1.22563 0.80985 0.96130 1.00582 1.20166 0.82602 0.76139 0.89929 1.90575 1.32216 1.49622 1.73244 1.47521 1.12996 1.64058 1.07474 1.21318 1.01253 0.97317 0.79148 1.22021 0.98899 0.98349 1.01270 1.22089 1.02277 0.94353 1.02421 1.22107 0.83444 1.00625 0.96218 1.21235 0.98318 0.89470 0.88147 1.44065 1.06156 1.45192 1.34475 1.19344 1.22729 0.94579 1.02774 0.89811 1.25857 1.01974 0.95853 0.98757 1.70060 1.37168 1.09324 1.40134 0.85397 0.78405 0.77886 0.79007 1.19996 1.22634 1.20264 1.44283 1.07010 1.05110 1.53080 0.69777 1.73082 0.89927 1.28258 1.20414 0.89435 0.90020 0.88683 0.80994 0.89951 0.88761 0.88993 0.87564 0.91567 0.93786 0.90147 0.91422 0.93680 0.89437 0.91066 0.89161 0.94417 0.91606 0.88873 0.97281 0.88896 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.45 71.24 0.74 -0.21 16 2 C 0.02 0.55 7.22 43.05 0.31 0.87 16 3 C -0.16 -4.49 10.78 22.66 0.24 -4.24 16 4 C -0.04 -1.32 6.98 40.79 0.28 -1.04 16 5 C 0.60 23.00 7.84 86.59 0.68 23.68 16 6 O -0.57 -25.64 17.19 -4.12 -0.07 -25.71 16 7 N -0.60 -22.17 3.18 -816.81 -2.60 -24.77 16 8 C 0.09 2.79 4.36 86.77 0.38 3.17 16 9 C -0.10 -3.42 5.25 31.52 0.17 -3.26 16 10 C 0.17 6.57 0.91 3.35 0.00 6.58 16 11 C 0.12 5.20 6.01 86.52 0.52 5.72 16 12 C 0.52 20.13 6.35 87.45 0.56 20.68 16 13 O -0.58 -23.40 14.42 -3.05 -0.04 -23.45 16 14 N -0.59 -19.73 2.73 -802.64 -2.19 -21.92 16 15 C 0.11 3.07 3.14 44.99 0.14 3.21 16 16 C -0.15 -3.17 9.16 71.98 0.66 -2.51 16 17 C -0.15 -3.51 9.13 71.98 0.66 -2.85 16 18 C 0.10 3.23 5.48 86.59 0.47 3.70 16 19 C 0.15 6.37 5.56 86.24 0.48 6.85 16 20 N -0.58 -24.93 2.65 -655.01 -1.74 -26.67 16 21 C -0.27 -12.21 8.64 84.03 0.73 -11.48 16 22 H 0.08 3.65 6.10 -2.91 -0.02 3.63 16 23 C -0.03 -1.29 5.06 84.86 0.43 -0.86 16 24 N -0.92 -47.94 11.17 21.65 0.24 -47.70 16 25 Si 0.96 39.62 29.57 68.60 2.03 41.65 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 27 H -0.30 -12.79 7.11 99.48 0.71 -12.08 16 28 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 29 N -0.37 -10.10 6.51 -47.99 -0.31 -10.41 16 30 H 0.45 10.39 4.98 -220.00 -1.10 9.30 16 31 N -0.28 -7.48 12.14 -47.50 -0.58 -8.06 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.17 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.08 2.29 6.76 -2.39 -0.02 2.27 16 37 H 0.09 2.21 7.27 -2.39 -0.02 2.20 16 38 H 0.09 2.82 8.00 -2.39 -0.02 2.80 16 39 H 0.11 3.62 5.85 -2.39 -0.01 3.61 16 40 H 0.07 3.10 8.14 -2.39 -0.02 3.09 16 41 H 0.04 2.02 7.93 -2.39 -0.02 2.00 16 42 H 0.08 2.54 6.64 -2.39 -0.02 2.52 16 43 H 0.07 1.34 7.51 -2.39 -0.02 1.33 16 44 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.07 1.47 6.53 -2.39 -0.02 1.46 16 47 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 48 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.07 2.08 8.09 -2.39 -0.02 2.06 16 50 H 0.09 2.51 6.20 -2.38 -0.01 2.49 16 51 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 52 H 0.09 4.25 6.05 -2.39 -0.01 4.24 16 53 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 Total: -1.00 -65.65 410.75 2.05 -63.61 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -0.15 Total: 35.42 kcal Atomic # 6 Polarization: 40.56 SS G_CDS: 7.45 Total: 48.01 kcal Atomic # 7 Polarization: -132.35 SS G_CDS: -7.17 Total: -139.52 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -0.11 Total: -49.15 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -65.65 2.05 -63.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096229649.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.994 kcal (2) G-P(sol) polarization free energy of solvation -65.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds