Wall clock time and date at job start Tue Mar 31 2020 06:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48497 * 109.47271 * 240.00035 * 3 2 1 5 5 H 1.48509 * 109.46948 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47498 * 119.99577 * 3 2 1 7 7 C 1.37884 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00572 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99523 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46730 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00119 * 89.99713 * 10 9 7 12 12 C 1.53005 * 109.47226 * 85.37898 * 11 10 9 13 13 C 1.53007 * 117.49790 * 243.74891 * 12 11 10 14 14 C 1.53004 * 117.50092 * 175.08930 * 12 11 10 15 15 C 1.34771 * 120.00119 * 269.99599 * 10 9 7 16 16 O 1.21712 * 120.00381 * 185.11437 * 15 10 9 17 17 C 1.46581 * 119.99818 * 5.10621 * 15 10 9 18 18 C 1.40659 * 126.52994 * 49.41127 * 17 15 10 19 19 N 1.30697 * 108.72553 * 179.97438 * 18 17 15 20 20 N 1.39877 * 109.50864 * 359.97438 * 19 18 17 21 21 C 1.36601 * 108.16320 * 359.76047 * 20 19 18 22 22 N 1.33314 * 120.95251 * 179.67401 * 21 20 19 23 23 C 1.31613 * 121.30759 * 0.54429 * 22 21 20 24 24 C 1.39497 * 120.25495 * 359.72610 * 23 22 21 25 25 C 1.37195 * 132.19890 * 180.02562 * 20 19 18 26 26 C 1.47725 * 120.61144 * 0.02562 * 25 20 19 27 27 C 1.39634 * 120.15166 * 4.73022 * 26 25 20 28 28 C 1.37949 * 119.84268 * 179.76474 * 27 26 25 29 29 C 1.38370 * 120.15125 * 0.48837 * 28 27 26 30 30 C 1.38364 * 120.30282 * 359.78747 * 29 28 27 31 31 C 1.37938 * 120.15779 * 359.95368 * 30 29 28 32 32 H 0.97002 * 119.99987 * 0.02562 * 1 2 3 33 33 H 1.08993 * 109.47051 * 59.98979 * 9 7 2 34 34 H 1.09002 * 109.46721 * 299.99197 * 9 7 2 35 35 H 1.09002 * 109.47375 * 205.37748 * 11 10 9 36 36 H 1.09002 * 109.46999 * 325.37936 * 11 10 9 37 37 H 1.08995 * 115.54849 * 29.41267 * 12 11 10 38 38 H 1.08999 * 117.49745 * 359.97438 * 13 12 11 39 39 H 1.09000 * 117.49798 * 145.02074 * 13 12 11 40 40 H 1.08996 * 117.49836 * 214.98145 * 14 12 11 41 41 H 1.08997 * 117.49615 * 359.97438 * 14 12 11 42 42 H 1.07990 * 125.63852 * 359.93694 * 18 17 15 43 43 H 1.07993 * 119.87386 * 179.75172 * 23 22 21 44 44 H 1.08003 * 120.46415 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.07712 * 359.97438 * 27 26 25 46 46 H 1.08001 * 119.92137 * 180.27028 * 28 27 26 47 47 H 1.07998 * 119.84633 * 179.75935 * 29 28 27 48 48 H 1.08008 * 119.92238 * 179.97438 * 30 29 28 49 49 H 1.07998 * 120.08163 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6791 -4.1694 1.2692 12 6 1.6866 -5.2211 1.7691 13 6 0.9647 -4.9404 3.0887 14 6 2.0626 -6.0054 3.0279 15 6 2.6409 -4.1249 -1.1666 16 8 3.3581 -5.1083 -1.1687 17 6 2.2532 -3.4978 -2.4335 18 6 2.3364 -2.1299 -2.7506 19 7 1.9001 -1.9546 -3.9701 20 7 1.5132 -3.1859 -4.5093 21 6 1.7329 -4.1510 -3.5678 22 7 1.4440 -5.4287 -3.8153 23 6 0.9487 -5.8057 -4.9749 24 6 0.7086 -4.8644 -5.9761 25 6 0.9984 -3.5356 -5.7320 26 6 0.7588 -2.5105 -6.7683 27 6 1.1464 -1.1871 -6.5487 28 6 0.9240 -0.2360 -7.5228 29 6 0.3092 -0.5888 -8.7111 30 6 -0.0826 -1.8972 -8.9329 31 6 0.1384 -2.8595 -7.9697 32 1 -0.4850 0.8401 -0.0004 33 1 0.6246 -2.5571 -0.8895 34 1 0.6241 -2.5567 0.8904 35 1 3.6545 -4.6324 1.1196 36 1 2.7650 -3.3713 2.0067 37 1 1.1313 -5.7493 0.9941 38 1 1.1972 -4.0068 3.6008 39 1 -0.0654 -5.2844 3.1818 40 1 1.7543 -7.0496 3.0811 41 1 3.0172 -5.7725 3.4996 42 1 2.7001 -1.3530 -2.0947 43 1 0.7268 -6.8477 -5.1519 44 1 0.3018 -5.1700 -6.9288 45 1 1.6223 -0.9096 -5.6198 46 1 1.2273 0.7870 -7.3560 47 1 0.1339 0.1606 -9.4688 48 1 -0.5624 -2.1657 -9.8626 49 1 -0.1675 -3.8804 -8.1443 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096404044.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:26 Heat of formation + Delta-G solvation = 146.242181 kcal Electronic energy + Delta-G solvation = -34023.296452 eV Core-core repulsion = 29725.765885 eV Total energy + Delta-G solvation = -4297.530567 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.12088 -39.40451 -38.80863 -37.61923 -36.73027 -34.55528 -34.41009 -32.49269 -31.57838 -30.92549 -30.32538 -29.14847 -27.72685 -26.15095 -24.97777 -23.79857 -22.86137 -22.40412 -22.20312 -21.99495 -21.42899 -20.21325 -18.71250 -17.70923 -17.20197 -17.13846 -16.51236 -16.20177 -15.85381 -15.68541 -15.42789 -15.23177 -14.79844 -14.54161 -14.46605 -14.22761 -13.87941 -13.56209 -13.31230 -13.12403 -13.08492 -12.79863 -12.54317 -12.38667 -12.28846 -11.91118 -11.65294 -11.41435 -11.29287 -11.28472 -11.17393 -11.03519 -10.98016 -10.79939 -10.73091 -10.27505 -10.05800 -9.74609 -9.58847 -9.44018 -9.30385 -9.16740 -9.02889 -8.94111 -8.58173 -7.65309 -7.42454 -6.20976 -4.29285 0.07607 0.94684 1.20767 1.53775 2.16439 2.85081 3.21235 3.27458 3.29175 3.35925 3.66727 3.76084 3.87142 4.08636 4.12644 4.24871 4.32370 4.43615 4.57875 4.74163 4.88434 4.97599 5.09783 5.17118 5.18444 5.27373 5.31376 5.33116 5.38147 5.42173 5.56041 5.64457 5.73191 5.86417 5.92288 5.93695 6.02464 6.05423 6.16988 6.23603 6.27819 6.30380 6.37175 6.38688 6.45295 6.64353 6.69231 6.73912 6.88844 7.02816 7.28098 7.64096 7.74592 7.76326 7.86003 8.06028 8.43163 8.78590 9.16940 9.37508 10.84441 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.008415 B = 0.003351 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.598614 B = 8353.640511 C =10993.289604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.071 3.929 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.242 3.758 10 N -0.590 5.590 11 C 0.153 3.847 12 C -0.154 4.154 13 C -0.179 4.179 14 C -0.181 4.181 15 C 0.601 3.399 16 O -0.562 6.562 17 C -0.258 4.258 18 C 0.162 3.838 19 N -0.327 5.327 20 N -0.308 5.308 21 C 0.301 3.699 22 N -0.455 5.455 23 C 0.175 3.825 24 C -0.235 4.235 25 C 0.247 3.753 26 C -0.080 4.080 27 C -0.080 4.080 28 C -0.126 4.126 29 C -0.099 4.099 30 C -0.131 4.131 31 C -0.085 4.085 32 H 0.266 0.734 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.226 0.774 43 H 0.179 0.821 44 H 0.164 0.836 45 H 0.164 0.836 46 H 0.129 0.871 47 H 0.125 0.875 48 H 0.128 0.872 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 -5.716 -13.736 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.121 3.879 10 N -0.319 5.319 11 C 0.030 3.970 12 C -0.174 4.174 13 C -0.216 4.216 14 C -0.219 4.219 15 C 0.389 3.611 16 O -0.443 6.443 17 C -0.274 4.274 18 C -0.017 4.017 19 N -0.149 5.149 20 N -0.076 5.076 21 C 0.071 3.929 22 N -0.165 5.165 23 C -0.006 4.006 24 C -0.259 4.259 25 C 0.129 3.871 26 C -0.081 4.081 27 C -0.099 4.099 28 C -0.144 4.144 29 C -0.117 4.117 30 C -0.149 4.149 31 C -0.104 4.104 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.242 0.758 43 H 0.196 0.804 44 H 0.181 0.819 45 H 0.181 0.819 46 H 0.147 0.853 47 H 0.143 0.857 48 H 0.146 0.854 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.301 -5.620 -13.705 14.870 hybrid contribution 0.032 1.055 0.014 1.056 sum -1.269 -4.564 -13.691 14.488 Atomic orbital electron populations 1.69916 1.06074 1.27460 1.48286 1.24948 0.94785 0.99082 0.94591 0.86696 0.79743 0.82907 0.79079 1.19739 1.21104 1.19954 1.21508 0.93608 0.90631 1.52662 0.91718 1.19361 0.87545 0.82386 0.98564 1.47996 1.45160 1.34988 1.03773 1.20828 0.95938 0.94461 0.85801 1.22766 1.02275 1.01197 0.91140 1.23023 0.96869 1.00233 1.01458 1.22894 0.99803 0.96752 1.02453 1.16790 0.79447 0.82287 0.82556 1.90707 1.39191 1.26710 1.87666 1.19403 1.19813 0.92964 0.95182 1.25163 0.89670 0.96055 0.90823 1.77233 1.27242 0.97312 1.13122 1.47128 1.41345 1.09093 1.10077 1.20260 0.98299 0.84342 0.89978 1.68028 1.13691 1.13117 1.21702 1.23239 0.89870 1.00623 0.86907 1.21987 1.09898 0.90326 1.03718 1.19444 0.91369 0.93685 0.82629 1.18453 1.03705 0.92699 0.93216 1.22343 0.95472 0.91350 1.00742 1.21241 0.99572 0.99957 0.93613 1.21407 0.96720 0.96421 0.97198 1.21032 1.01354 0.93143 0.99348 1.21204 0.97130 0.99988 0.92048 0.92373 0.94794 0.94465 0.90432 0.90356 0.88115 0.88615 0.89404 0.89357 0.88986 0.75801 0.80408 0.81889 0.81896 0.85299 0.85712 0.85384 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.75 13.29 55.43 0.74 -23.01 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 19.66 29.54 -169.99 -5.02 14.64 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.55 -13.46 6.37 -34.43 -0.22 -13.68 16 8 H 0.06 1.58 7.68 -52.49 -0.40 1.18 16 9 C 0.24 5.82 4.74 -5.19 -0.02 5.79 16 10 N -0.59 -13.06 2.46 -176.64 -0.43 -13.50 16 11 C 0.15 2.96 5.70 -4.04 -0.02 2.94 16 12 C -0.15 -2.69 6.01 -90.61 -0.54 -3.23 16 13 C -0.18 -2.71 10.18 -26.69 -0.27 -2.99 16 14 C -0.18 -2.57 10.26 -26.69 -0.27 -2.85 16 15 C 0.60 14.02 7.51 -12.90 -0.10 13.92 16 16 O -0.56 -14.08 16.67 5.18 0.09 -13.99 16 17 C -0.26 -5.75 4.79 -104.63 -0.50 -6.25 16 18 C 0.16 3.47 10.03 -17.12 -0.17 3.29 16 19 N -0.33 -6.56 9.46 30.77 0.29 -6.27 16 20 N -0.31 -5.77 3.87 -8.41 -0.03 -5.80 16 21 C 0.30 6.19 7.90 -155.87 -1.23 4.96 16 22 N -0.45 -8.37 10.44 -12.10 -0.13 -8.50 16 23 C 0.18 2.22 11.26 -17.18 -0.19 2.03 16 24 C -0.24 -2.67 9.48 -39.13 -0.37 -3.04 16 25 C 0.25 3.66 6.80 -81.61 -0.56 3.11 16 26 C -0.08 -1.05 5.87 -104.98 -0.62 -1.66 16 27 C -0.08 -1.13 9.49 -39.17 -0.37 -1.50 16 28 C -0.13 -1.42 10.03 -39.64 -0.40 -1.82 16 29 C -0.10 -0.91 10.04 -39.49 -0.40 -1.30 16 30 C -0.13 -1.11 10.03 -39.64 -0.40 -1.51 16 31 C -0.08 -0.82 9.44 -39.17 -0.37 -1.19 16 32 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.03 0.90 6.60 -51.93 -0.34 0.55 16 34 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 35 H 0.08 1.51 7.36 -51.93 -0.38 1.12 16 36 H 0.08 1.47 7.84 -51.93 -0.41 1.06 16 37 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 38 H 0.10 1.44 8.03 -51.93 -0.42 1.03 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.23 4.91 5.48 -52.49 -0.29 4.62 16 43 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.16 1.08 6.29 -52.48 -0.33 0.75 16 45 H 0.16 2.65 5.07 -52.49 -0.27 2.39 16 46 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 48 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 49 H 0.13 0.86 6.29 -52.49 -0.33 0.53 16 LS Contribution 410.23 15.07 6.18 6.18 Total: -1.00 -32.44 410.23 -11.54 -43.98 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.10 Total: 9.55 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -7.12 Total: -3.28 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.43 Total: -57.08 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.09 Total: -13.99 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.44 -11.54 -43.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096404044.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.226 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds