Wall clock time and date at job start Tue Mar 31 2020 06:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48497 * 109.47271 * 240.00035 * 3 2 1 5 5 H 1.48509 * 109.46948 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47498 * 119.99577 * 3 2 1 7 7 C 1.37884 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00572 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99523 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46730 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00119 * 89.99713 * 10 9 7 12 12 C 1.53005 * 109.47226 * 85.37898 * 11 10 9 13 13 C 1.53007 * 117.49790 * 243.74891 * 12 11 10 14 14 C 1.53004 * 117.50092 * 175.08930 * 12 11 10 15 15 C 1.34771 * 120.00119 * 269.99599 * 10 9 7 16 16 O 1.21712 * 120.00381 * 185.11437 * 15 10 9 17 17 C 1.46581 * 119.99818 * 5.10621 * 15 10 9 18 18 C 1.40659 * 126.52994 * 49.41127 * 17 15 10 19 19 N 1.30697 * 108.72553 * 179.97438 * 18 17 15 20 20 N 1.39877 * 109.50864 * 359.97438 * 19 18 17 21 21 C 1.36601 * 108.16320 * 359.76047 * 20 19 18 22 22 N 1.33314 * 120.95251 * 179.67401 * 21 20 19 23 23 C 1.31613 * 121.30759 * 0.54429 * 22 21 20 24 24 C 1.39497 * 120.25495 * 359.72610 * 23 22 21 25 25 C 1.37195 * 132.19890 * 180.02562 * 20 19 18 26 26 C 1.47725 * 120.61144 * 0.02562 * 25 20 19 27 27 C 1.39634 * 120.15166 * 4.73022 * 26 25 20 28 28 C 1.37949 * 119.84268 * 179.76474 * 27 26 25 29 29 C 1.38370 * 120.15125 * 0.48837 * 28 27 26 30 30 C 1.38364 * 120.30282 * 359.78747 * 29 28 27 31 31 C 1.37938 * 120.15779 * 359.95368 * 30 29 28 32 32 H 0.97002 * 119.99987 * 0.02562 * 1 2 3 33 33 H 1.08993 * 109.47051 * 59.98979 * 9 7 2 34 34 H 1.09002 * 109.46721 * 299.99197 * 9 7 2 35 35 H 1.09002 * 109.47375 * 205.37748 * 11 10 9 36 36 H 1.09002 * 109.46999 * 325.37936 * 11 10 9 37 37 H 1.08995 * 115.54849 * 29.41267 * 12 11 10 38 38 H 1.08999 * 117.49745 * 359.97438 * 13 12 11 39 39 H 1.09000 * 117.49798 * 145.02074 * 13 12 11 40 40 H 1.08996 * 117.49836 * 214.98145 * 14 12 11 41 41 H 1.08997 * 117.49615 * 359.97438 * 14 12 11 42 42 H 1.07990 * 125.63852 * 359.93694 * 18 17 15 43 43 H 1.07993 * 119.87386 * 179.75172 * 23 22 21 44 44 H 1.08003 * 120.46415 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.07712 * 359.97438 * 27 26 25 46 46 H 1.08001 * 119.92137 * 180.27028 * 28 27 26 47 47 H 1.07998 * 119.84633 * 179.75935 * 29 28 27 48 48 H 1.08008 * 119.92238 * 179.97438 * 30 29 28 49 49 H 1.07998 * 120.08163 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6791 -4.1694 1.2692 12 6 1.6866 -5.2211 1.7691 13 6 0.9647 -4.9404 3.0887 14 6 2.0626 -6.0054 3.0279 15 6 2.6409 -4.1249 -1.1666 16 8 3.3581 -5.1083 -1.1687 17 6 2.2532 -3.4978 -2.4335 18 6 2.3364 -2.1299 -2.7506 19 7 1.9001 -1.9546 -3.9701 20 7 1.5132 -3.1859 -4.5093 21 6 1.7329 -4.1510 -3.5678 22 7 1.4440 -5.4287 -3.8153 23 6 0.9487 -5.8057 -4.9749 24 6 0.7086 -4.8644 -5.9761 25 6 0.9984 -3.5356 -5.7320 26 6 0.7588 -2.5105 -6.7683 27 6 1.1464 -1.1871 -6.5487 28 6 0.9240 -0.2360 -7.5228 29 6 0.3092 -0.5888 -8.7111 30 6 -0.0826 -1.8972 -8.9329 31 6 0.1384 -2.8595 -7.9697 32 1 -0.4850 0.8401 -0.0004 33 1 0.6246 -2.5571 -0.8895 34 1 0.6241 -2.5567 0.8904 35 1 3.6545 -4.6324 1.1196 36 1 2.7650 -3.3713 2.0067 37 1 1.1313 -5.7493 0.9941 38 1 1.1972 -4.0068 3.6008 39 1 -0.0654 -5.2844 3.1818 40 1 1.7543 -7.0496 3.0811 41 1 3.0172 -5.7725 3.4996 42 1 2.7001 -1.3530 -2.0947 43 1 0.7268 -6.8477 -5.1519 44 1 0.3018 -5.1700 -6.9288 45 1 1.6223 -0.9096 -5.6198 46 1 1.2273 0.7870 -7.3560 47 1 0.1339 0.1606 -9.4688 48 1 -0.5624 -2.1657 -9.8626 49 1 -0.1675 -3.8804 -8.1443 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096404044.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:25 Heat of formation + Delta-G solvation = 129.167097 kcal Electronic energy + Delta-G solvation = -34024.036883 eV Core-core repulsion = 29725.765885 eV Total energy + Delta-G solvation = -4298.270998 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.47511 -40.72409 -40.03803 -38.91541 -38.17019 -36.36771 -35.56203 -34.42983 -32.70672 -31.86460 -31.47511 -30.47070 -29.55819 -27.77796 -26.08176 -25.30115 -24.50927 -23.60861 -23.21040 -23.19028 -22.71849 -21.60403 -20.16155 -19.09205 -18.72700 -18.33819 -18.08982 -17.59086 -17.42894 -17.03225 -16.64212 -16.29678 -16.23343 -16.01329 -15.79912 -15.56641 -15.01150 -14.79188 -14.50135 -14.32529 -14.28208 -14.09999 -14.04344 -13.90886 -13.72549 -13.45242 -13.30161 -12.92829 -12.73334 -12.61385 -12.58487 -12.33778 -12.29729 -12.18707 -12.09593 -11.90321 -11.74875 -11.34503 -10.90750 -10.81796 -10.74128 -10.66312 -10.56833 -9.97001 -9.92381 -9.46150 -8.82649 -8.20128 -6.34671 -0.96738 -0.29352 0.41509 0.55738 0.88479 1.23946 1.42640 1.43600 1.50501 1.95415 2.24328 2.37313 2.55185 2.74025 2.84054 2.90240 2.98508 3.10458 3.22507 3.73977 3.83444 3.91943 4.00237 4.02308 4.08842 4.12336 4.14132 4.21667 4.29071 4.39434 4.42159 4.48418 4.51875 4.53116 4.77479 4.79379 4.83803 4.89872 4.93735 4.98928 5.02010 5.11209 5.20953 5.25817 5.27030 5.28063 5.30234 5.45488 5.53139 5.64391 5.67717 5.89901 5.95953 6.06179 6.28477 6.54538 6.61381 6.81232 7.30524 7.43339 8.85233 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.008415 B = 0.003351 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.598614 B = 8353.640511 C =10993.289604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.031 3.969 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.591 5.591 11 C 0.153 3.847 12 C -0.183 4.183 13 C -0.173 4.173 14 C -0.152 4.152 15 C 0.601 3.399 16 O -0.590 6.590 17 C -0.310 4.310 18 C 0.151 3.849 19 N -0.338 5.338 20 N -0.310 5.310 21 C 0.300 3.700 22 N -0.505 5.505 23 C 0.192 3.808 24 C -0.204 4.204 25 C 0.218 3.782 26 C -0.104 4.104 27 C -0.117 4.117 28 C -0.140 4.140 29 C -0.092 4.092 30 C -0.124 4.124 31 C -0.073 4.073 32 H 0.267 0.733 33 H 0.005 0.995 34 H 0.019 0.981 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.210 0.790 43 H 0.235 0.765 44 H 0.226 0.774 45 H 0.128 0.872 46 H 0.133 0.867 47 H 0.156 0.844 48 H 0.170 0.830 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 -7.333 -17.204 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.171 4.171 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.320 5.320 11 C 0.030 3.970 12 C -0.203 4.203 13 C -0.210 4.210 14 C -0.190 4.190 15 C 0.391 3.609 16 O -0.473 6.473 17 C -0.327 4.327 18 C -0.028 4.028 19 N -0.161 5.161 20 N -0.078 5.078 21 C 0.068 3.932 22 N -0.218 5.218 23 C 0.015 3.985 24 C -0.227 4.227 25 C 0.102 3.898 26 C -0.105 4.105 27 C -0.136 4.136 28 C -0.158 4.158 29 C -0.110 4.110 30 C -0.141 4.141 31 C -0.092 4.092 32 H 0.076 0.924 33 H 0.023 0.977 34 H 0.038 0.962 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.226 0.774 43 H 0.251 0.749 44 H 0.242 0.758 45 H 0.146 0.854 46 H 0.151 0.849 47 H 0.173 0.827 48 H 0.187 0.813 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.639 -7.241 -17.192 18.840 hybrid contribution 0.316 1.423 0.747 1.638 sum -2.323 -5.818 -16.445 17.598 Atomic orbital electron populations 1.70031 1.07515 1.28137 1.49664 1.25606 0.95347 1.02019 0.94088 0.85760 0.78609 0.79030 0.79365 1.19166 1.20984 1.19172 1.21584 0.93444 0.91008 1.52017 0.91884 1.18890 0.87319 0.83096 0.96131 1.48005 1.44628 1.34542 1.04790 1.20939 0.96368 0.95009 0.84696 1.22550 1.03382 1.02309 0.92014 1.23084 0.97860 1.00921 0.99144 1.23021 1.00027 0.97333 0.98585 1.16994 0.78888 0.81909 0.83156 1.90645 1.40496 1.27984 1.88132 1.19361 1.23753 0.93596 0.95948 1.24799 0.90777 0.95671 0.91579 1.77212 1.27788 0.98541 1.12520 1.47259 1.41289 1.08035 1.11247 1.20323 0.97525 0.85569 0.89761 1.68118 1.16937 1.11839 1.24911 1.24357 0.85815 1.03367 0.85005 1.22765 1.06529 0.88026 1.05341 1.20400 0.91677 0.96023 0.81738 1.18605 1.05695 0.91770 0.94432 1.22220 0.97620 0.93189 1.00613 1.21384 1.00382 0.99770 0.94278 1.21823 0.94831 0.97929 0.96457 1.21567 0.99898 0.92295 1.00347 1.21648 0.95130 1.02270 0.90155 0.92426 0.97651 0.96244 0.90883 0.90101 0.90382 0.88570 0.88409 0.87452 0.87451 0.77383 0.74916 0.75762 0.85431 0.84942 0.82659 0.81267 0.81083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.77 13.29 21.45 0.28 -51.48 16 2 C 0.03 1.63 5.46 84.66 0.46 2.09 16 3 Si 0.95 41.84 29.54 68.60 2.03 43.87 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.54 -28.49 6.37 25.60 0.16 -28.33 16 8 H 0.06 3.28 7.68 -2.91 -0.02 3.26 16 9 C 0.27 13.91 4.74 85.64 0.41 14.31 16 10 N -0.59 -28.34 2.46 -830.97 -2.04 -30.38 16 11 C 0.15 6.27 5.70 86.38 0.49 6.76 16 12 C -0.18 -6.64 6.01 -10.79 -0.06 -6.70 16 13 C -0.17 -5.25 10.18 30.62 0.31 -4.93 16 14 C -0.15 -4.17 10.26 30.62 0.31 -3.85 16 15 C 0.60 30.38 7.51 86.42 0.65 31.03 16 16 O -0.59 -31.57 16.67 -4.39 -0.07 -31.64 16 17 C -0.31 -15.10 4.79 -19.87 -0.10 -15.19 16 18 C 0.15 7.15 10.03 85.45 0.86 8.01 16 19 N -0.34 -14.89 9.46 -56.58 -0.53 -15.42 16 20 N -0.31 -12.19 3.87 -180.51 -0.70 -12.89 16 21 C 0.30 13.04 7.90 134.01 1.06 14.10 16 22 N -0.50 -18.67 10.44 -192.18 -2.01 -20.68 16 23 C 0.19 4.26 11.26 85.03 0.96 5.22 16 24 C -0.20 -3.77 9.48 22.56 0.21 -3.56 16 25 C 0.22 6.24 6.80 40.80 0.28 6.52 16 26 C -0.10 -2.59 5.87 -20.09 -0.12 -2.70 16 27 C -0.12 -3.41 9.49 22.54 0.21 -3.20 16 28 C -0.14 -3.11 10.03 22.23 0.22 -2.89 16 29 C -0.09 -1.38 10.04 22.33 0.22 -1.15 16 30 C -0.12 -1.47 10.03 22.23 0.22 -1.24 16 31 C -0.07 -1.07 9.44 22.54 0.21 -0.86 16 32 H 0.27 14.39 8.31 -92.71 -0.77 13.61 16 33 H 0.01 0.31 6.60 -2.39 -0.02 0.30 16 34 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 35 H 0.07 3.01 7.36 -2.39 -0.02 3.00 16 36 H 0.08 3.20 7.84 -2.39 -0.02 3.18 16 37 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.10 2.90 8.03 -2.39 -0.02 2.88 16 39 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.21 10.20 5.48 -2.92 -0.02 10.19 16 43 H 0.23 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.23 1.23 6.29 -2.91 -0.02 1.22 16 45 H 0.13 4.60 5.07 -2.91 -0.01 4.59 16 46 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 47 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 48 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 49 H 0.17 0.97 6.29 -2.91 -0.02 0.95 16 Total: -1.00 -81.14 410.23 4.94 -76.20 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 1.00 Total: 28.99 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 6.98 Total: 13.43 kcal Atomic # 7 Polarization: -125.85 SS G_CDS: -4.99 Total: -130.85 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.07 Total: -31.64 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -81.14 4.94 -76.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096404044.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.370 kcal (2) G-P(sol) polarization free energy of solvation -81.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds