Wall clock time and date at job start Tue Mar 31 2020 06:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30115 * 125.46032 * 2 1 4 4 C 1.35199 * 108.64800 * 180.02562 * 3 2 1 5 5 C 1.48395 * 126.32405 * 179.97438 * 4 3 2 6 6 C 1.39345 * 120.11846 * 0.03141 * 5 4 3 7 7 C 1.38020 * 119.87482 * 180.02562 * 6 5 4 8 8 C 1.38319 * 120.11889 * 0.02562 * 7 6 5 9 9 S 1.76206 * 119.87562 * 179.97438 * 8 7 6 10 10 O 1.42099 * 106.40004 * 336.45827 * 9 8 7 11 11 O 1.42097 * 106.40271 * 203.53846 * 9 8 7 12 12 N 1.65605 * 107.21866 * 89.99868 * 9 8 7 13 13 C 1.46502 * 119.99873 * 270.00014 * 12 9 8 14 14 C 1.50697 * 109.47079 * 265.00173 * 13 12 9 15 15 H 1.08000 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99754 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00085 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99983 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47496 * 89.99397 * 18 16 14 20 20 H 1.48492 * 109.47392 * 209.99768 * 18 16 14 21 21 H 1.48508 * 109.47109 * 329.99563 * 18 16 14 22 22 C 1.46499 * 119.99782 * 89.99987 * 12 9 8 23 23 C 1.53000 * 109.46840 * 95.00317 * 22 12 9 24 24 C 1.53003 * 117.49371 * 243.61805 * 23 22 12 25 25 C 1.53001 * 117.49608 * 174.99880 * 23 22 12 26 26 C 1.38321 * 120.24732 * 0.23092 * 8 7 6 27 27 C 1.38014 * 120.12230 * 359.49138 * 26 8 7 28 28 C 1.35527 * 107.35079 * 0.26155 * 4 3 2 29 29 O 1.33978 * 125.46285 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46373 * 90.00236 * 1 2 3 31 31 H 1.08994 * 109.47035 * 210.00389 * 1 2 3 32 32 H 1.09002 * 109.47115 * 330.00920 * 1 2 3 33 33 H 1.07999 * 120.06705 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.94026 * 179.97438 * 7 6 5 35 35 H 1.08998 * 109.47222 * 25.00345 * 13 12 9 36 36 H 1.09000 * 109.46517 * 144.99933 * 13 12 9 37 37 H 0.97003 * 120.00108 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.47391 * 334.99987 * 22 12 9 39 39 H 1.09001 * 109.46813 * 215.00043 * 22 12 9 40 40 H 1.08995 * 115.55630 * 29.32490 * 23 22 12 41 41 H 1.08998 * 117.50656 * 0.02562 * 24 23 22 42 42 H 1.09001 * 117.49674 * 145.02590 * 24 23 22 43 43 H 1.09003 * 117.49710 * 214.97494 * 25 23 22 44 44 H 1.08998 * 117.50185 * 359.97438 * 25 23 22 45 45 H 1.08002 * 119.93945 * 179.74235 * 26 8 7 46 46 H 1.08000 * 120.06336 * 180.26856 * 27 26 8 47 47 H 1.08000 * 126.52724 * 179.73549 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2619 1.0598 0.0000 4 6 3.5561 0.6688 -0.0006 5 6 4.7433 1.5590 -0.0013 6 6 4.5797 2.9428 -0.0008 7 6 5.6874 3.7661 -0.0020 8 6 6.9582 3.2198 -0.0043 9 16 8.3680 4.2769 -0.0065 10 8 7.9383 5.5176 -0.5501 11 8 9.4378 3.5179 -0.5529 12 7 8.7629 4.5708 1.5747 13 6 8.1764 5.7158 2.2755 14 6 9.1189 6.8891 2.1974 15 1 10.0608 6.7914 1.6780 16 6 8.7793 8.0868 2.7898 17 7 7.6325 8.2055 3.4227 18 14 9.9479 9.5409 2.6937 19 1 9.6446 10.3403 1.4795 20 1 9.7813 10.3906 3.9000 21 1 11.3470 9.0479 2.6249 22 6 9.6986 3.6857 2.2726 23 6 11.1101 4.2707 2.1925 24 6 12.1678 3.4630 1.4376 25 6 12.2179 3.5510 2.9643 26 6 7.1264 1.8469 -0.0102 27 6 6.0258 1.0142 -0.0032 28 6 3.5688 -0.6864 -0.0068 29 8 2.2843 -1.0912 -0.0005 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5137 33 1 3.5879 3.3704 -0.0003 34 1 5.5618 4.8387 -0.0021 35 1 7.2275 5.9804 1.8088 36 1 8.0071 5.4546 3.3201 37 1 7.3937 9.0481 3.8398 38 1 9.6861 2.7015 1.8041 39 1 9.4019 3.5945 3.3175 40 1 11.1657 5.3574 2.1283 41 1 11.8580 2.5150 0.9977 42 1 12.9194 4.0182 0.8765 43 1 13.0026 4.1643 3.4075 44 1 11.9412 2.6610 3.5294 45 1 8.1209 1.4257 -0.0161 46 1 6.1583 -0.0576 -0.0034 47 1 4.4427 -1.3210 -0.0129 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096409578.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:55 Heat of formation + Delta-G solvation = 4.612128 kcal Electronic energy + Delta-G solvation = -31793.981759 eV Core-core repulsion = 27457.627758 eV Total energy + Delta-G solvation = -4336.354001 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.65630 -39.17650 -37.48440 -36.57477 -35.32190 -35.14485 -34.72574 -33.15064 -32.35619 -31.13565 -30.79424 -27.78621 -27.75009 -25.48464 -24.26621 -23.05108 -22.39548 -21.86766 -21.63484 -21.06341 -20.17928 -18.71327 -17.95370 -17.26022 -17.11266 -16.86811 -16.39039 -16.05526 -15.67133 -15.12105 -14.65646 -14.51538 -14.39137 -14.31568 -14.02301 -13.80788 -13.57737 -13.53995 -13.38341 -13.24605 -12.91836 -12.56085 -12.41778 -12.33047 -11.76389 -11.69475 -11.53650 -11.44078 -11.30128 -11.17706 -11.10136 -11.06107 -10.85398 -10.77977 -10.58257 -10.44722 -10.14829 -9.88475 -9.80343 -9.51902 -9.36871 -9.06297 -8.58890 -8.41718 -8.09164 -6.04523 -4.07588 0.36099 1.01984 1.27195 1.30625 2.34105 2.38658 3.34079 3.40196 3.42406 3.49170 3.50743 3.80531 4.24683 4.30102 4.39102 4.45489 4.47124 4.60565 4.84566 4.87411 4.93344 5.01988 5.16624 5.21654 5.27809 5.28605 5.34997 5.35897 5.45161 5.47674 5.55983 5.64241 5.68535 5.74529 5.94398 5.95850 6.00855 6.12438 6.17964 6.21507 6.30711 6.32269 6.49735 6.55654 6.78389 6.94824 7.23391 7.35280 7.40016 7.59226 7.93620 8.21508 8.93794 9.56962 11.04252 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.002504 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.701424 B =11180.280002 C =12631.262847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.195 3.805 3 N -0.471 5.471 4 C 0.023 3.977 5 C 0.029 3.971 6 C -0.111 4.111 7 C -0.014 4.014 8 C -0.669 4.669 9 S 2.683 3.317 10 O -0.941 6.941 11 O -0.968 6.968 12 N -0.979 5.979 13 C 0.256 3.744 14 C -0.523 4.523 15 H 0.064 0.936 16 C 0.063 3.937 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.168 3.832 23 C -0.163 4.163 24 C -0.178 4.178 25 C -0.184 4.184 26 C -0.022 4.022 27 C -0.134 4.134 28 C -0.055 4.055 29 O -0.201 6.201 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.263 0.737 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.142 0.858 46 H 0.129 0.871 47 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.534 -20.112 -4.302 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.013 4.013 3 N -0.200 5.200 4 C -0.095 4.095 5 C 0.028 3.972 6 C -0.130 4.130 7 C -0.033 4.033 8 C -0.753 4.753 9 S 2.771 3.229 10 O -0.931 6.931 11 O -0.958 6.958 12 N -0.818 5.818 13 C 0.134 3.866 14 C -0.563 4.563 15 H 0.082 0.918 16 C -0.139 4.139 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.198 1.198 22 C 0.041 3.959 23 C -0.183 4.183 24 C -0.215 4.215 25 C -0.222 4.222 26 C -0.041 4.041 27 C -0.153 4.153 28 C -0.126 4.126 29 O -0.087 6.087 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.146 0.854 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.160 0.840 46 H 0.147 0.853 47 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -8.558 -19.103 -4.914 21.502 hybrid contribution 0.360 -0.217 0.372 0.561 sum -8.198 -19.320 -4.542 21.473 Atomic orbital electron populations 1.20301 0.81006 1.05355 1.04871 1.26357 0.96661 0.78399 0.99879 1.70486 1.01183 1.30025 1.18325 1.20230 0.91318 0.91417 1.06509 1.17969 0.89453 0.92376 0.97413 1.21341 0.99736 0.92106 0.99824 1.21036 0.90510 1.01088 0.90664 1.31671 1.18676 1.09775 1.15158 1.02358 0.73527 0.73493 0.73543 1.93605 1.82667 1.40408 1.76418 1.93515 1.51925 1.73307 1.77084 1.57440 1.55150 1.37975 1.31217 1.19139 0.93651 0.80976 0.92842 1.21484 1.04448 0.95712 1.34624 0.91809 1.24909 0.95359 0.98552 0.95107 1.69914 1.21626 1.26140 1.35763 0.86568 0.81230 0.82520 0.77561 1.20446 1.21246 1.19824 1.20613 0.86726 0.90651 0.97866 1.23085 0.90586 1.01002 1.03581 1.22973 1.02666 1.02304 0.93594 1.22883 1.02123 1.02753 0.94465 1.20780 0.99413 0.91404 0.92488 1.21071 0.91220 0.99824 1.03185 1.25049 0.84927 0.95789 1.06828 1.84432 1.16782 1.37722 1.69790 0.88751 0.89200 0.87866 0.84325 0.83474 0.94326 0.94459 0.92727 0.91697 0.90359 0.85447 0.88838 0.89482 0.89287 0.89352 0.84020 0.85309 0.76306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.19 1.88 8.32 -13.00 -0.11 1.77 16 3 N -0.47 -5.92 11.00 -7.66 -0.08 -6.00 16 4 C 0.02 0.29 6.87 -83.17 -0.57 -0.29 16 5 C 0.03 0.38 5.88 -104.89 -0.62 -0.23 16 6 C -0.11 -1.63 9.70 -39.25 -0.38 -2.01 16 7 C -0.01 -0.23 9.51 -39.63 -0.38 -0.60 16 8 C -0.67 -11.01 5.98 -39.52 -0.24 -11.24 16 9 S 2.68 52.52 5.59 -107.50 -0.60 51.92 16 10 O -0.94 -21.98 16.24 -57.17 -0.93 -22.91 16 11 O -0.97 -19.02 16.23 -57.17 -0.93 -19.95 16 12 N -0.98 -19.62 2.80 -115.66 -0.32 -19.94 16 13 C 0.26 6.17 5.12 -5.19 -0.03 6.14 16 14 C -0.52 -14.10 8.70 -34.44 -0.30 -14.39 16 15 H 0.06 1.71 6.16 -52.49 -0.32 1.38 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.90 -25.65 13.29 55.43 0.74 -24.92 16 18 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 22 C 0.17 2.85 5.65 -4.04 -0.02 2.83 16 23 C -0.16 -2.85 5.90 -90.62 -0.53 -3.39 16 24 C -0.18 -2.73 10.18 -26.73 -0.27 -3.00 16 25 C -0.18 -2.62 10.25 -26.73 -0.27 -2.89 16 26 C -0.02 -0.30 9.51 -39.63 -0.38 -0.67 16 27 C -0.13 -1.57 9.57 -39.25 -0.38 -1.95 16 28 C -0.06 -0.51 11.57 29.76 0.34 -0.17 16 29 O -0.20 -1.93 10.76 5.54 0.06 -1.87 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.14 1.92 7.87 -52.49 -0.41 1.50 16 34 H 0.15 2.43 7.60 -52.49 -0.40 2.03 16 35 H 0.04 0.99 7.61 -51.93 -0.40 0.59 16 36 H 0.04 0.92 8.00 -51.93 -0.42 0.50 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.06 0.94 7.34 -51.93 -0.38 0.55 16 39 H 0.08 1.25 8.00 -51.93 -0.42 0.83 16 40 H 0.13 2.62 5.77 -51.93 -0.30 2.32 16 41 H 0.09 1.35 8.03 -51.93 -0.42 0.93 16 42 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.14 1.67 7.60 -52.49 -0.40 1.27 16 46 H 0.13 1.01 7.03 -52.49 -0.37 0.64 16 47 H 0.22 1.15 7.30 -52.49 -0.38 0.76 16 LS Contribution 410.90 15.07 6.19 6.19 Total: -1.00 -34.83 410.90 -11.03 -45.86 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.28 Total: 3.44 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -3.85 Total: -28.36 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.33 Total: -50.87 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -1.80 Total: -44.72 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 52.52 SS G_CDS: -0.60 Total: 51.92 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.83 -11.03 -45.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096409578.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.473 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds