Wall clock time and date at job start Tue Mar 31 2020 06:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30115 * 125.46032 * 2 1 4 4 C 1.35199 * 108.64800 * 180.02562 * 3 2 1 5 5 C 1.48395 * 126.32405 * 179.97438 * 4 3 2 6 6 C 1.39345 * 120.11846 * 0.03141 * 5 4 3 7 7 C 1.38020 * 119.87482 * 180.02562 * 6 5 4 8 8 C 1.38319 * 120.11889 * 0.02562 * 7 6 5 9 9 S 1.76206 * 119.87562 * 179.97438 * 8 7 6 10 10 O 1.42099 * 106.40004 * 336.45827 * 9 8 7 11 11 O 1.42097 * 106.40271 * 203.53846 * 9 8 7 12 12 N 1.65605 * 107.21866 * 89.99868 * 9 8 7 13 13 C 1.46502 * 119.99873 * 270.00014 * 12 9 8 14 14 C 1.50697 * 109.47079 * 265.00173 * 13 12 9 15 15 H 1.08000 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99754 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00085 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99983 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47496 * 89.99397 * 18 16 14 20 20 H 1.48492 * 109.47392 * 209.99768 * 18 16 14 21 21 H 1.48508 * 109.47109 * 329.99563 * 18 16 14 22 22 C 1.46499 * 119.99782 * 89.99987 * 12 9 8 23 23 C 1.53000 * 109.46840 * 95.00317 * 22 12 9 24 24 C 1.53003 * 117.49371 * 243.61805 * 23 22 12 25 25 C 1.53001 * 117.49608 * 174.99880 * 23 22 12 26 26 C 1.38321 * 120.24732 * 0.23092 * 8 7 6 27 27 C 1.38014 * 120.12230 * 359.49138 * 26 8 7 28 28 C 1.35527 * 107.35079 * 0.26155 * 4 3 2 29 29 O 1.33978 * 125.46285 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46373 * 90.00236 * 1 2 3 31 31 H 1.08994 * 109.47035 * 210.00389 * 1 2 3 32 32 H 1.09002 * 109.47115 * 330.00920 * 1 2 3 33 33 H 1.07999 * 120.06705 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.94026 * 179.97438 * 7 6 5 35 35 H 1.08998 * 109.47222 * 25.00345 * 13 12 9 36 36 H 1.09000 * 109.46517 * 144.99933 * 13 12 9 37 37 H 0.97003 * 120.00108 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.47391 * 334.99987 * 22 12 9 39 39 H 1.09001 * 109.46813 * 215.00043 * 22 12 9 40 40 H 1.08995 * 115.55630 * 29.32490 * 23 22 12 41 41 H 1.08998 * 117.50656 * 0.02562 * 24 23 22 42 42 H 1.09001 * 117.49674 * 145.02590 * 24 23 22 43 43 H 1.09003 * 117.49710 * 214.97494 * 25 23 22 44 44 H 1.08998 * 117.50185 * 359.97438 * 25 23 22 45 45 H 1.08002 * 119.93945 * 179.74235 * 26 8 7 46 46 H 1.08000 * 120.06336 * 180.26856 * 27 26 8 47 47 H 1.08000 * 126.52724 * 179.73549 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2619 1.0598 0.0000 4 6 3.5561 0.6688 -0.0006 5 6 4.7433 1.5590 -0.0013 6 6 4.5797 2.9428 -0.0008 7 6 5.6874 3.7661 -0.0020 8 6 6.9582 3.2198 -0.0043 9 16 8.3680 4.2769 -0.0065 10 8 7.9383 5.5176 -0.5501 11 8 9.4378 3.5179 -0.5529 12 7 8.7629 4.5708 1.5747 13 6 8.1764 5.7158 2.2755 14 6 9.1189 6.8891 2.1974 15 1 10.0608 6.7914 1.6780 16 6 8.7793 8.0868 2.7898 17 7 7.6325 8.2055 3.4227 18 14 9.9479 9.5409 2.6937 19 1 9.6446 10.3403 1.4795 20 1 9.7813 10.3906 3.9000 21 1 11.3470 9.0479 2.6249 22 6 9.6986 3.6857 2.2726 23 6 11.1101 4.2707 2.1925 24 6 12.1678 3.4630 1.4376 25 6 12.2179 3.5510 2.9643 26 6 7.1264 1.8469 -0.0102 27 6 6.0258 1.0142 -0.0032 28 6 3.5688 -0.6864 -0.0068 29 8 2.2843 -1.0912 -0.0005 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5137 33 1 3.5879 3.3704 -0.0003 34 1 5.5618 4.8387 -0.0021 35 1 7.2275 5.9804 1.8088 36 1 8.0071 5.4546 3.3201 37 1 7.3937 9.0481 3.8398 38 1 9.6861 2.7015 1.8041 39 1 9.4019 3.5945 3.3175 40 1 11.1657 5.3574 2.1283 41 1 11.8580 2.5150 0.9977 42 1 12.9194 4.0182 0.8765 43 1 13.0026 4.1643 3.4075 44 1 11.9412 2.6610 3.5294 45 1 8.1209 1.4257 -0.0161 46 1 6.1583 -0.0576 -0.0034 47 1 4.4427 -1.3210 -0.0129 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096409578.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:54 Heat of formation + Delta-G solvation = -19.485496 kcal Electronic energy + Delta-G solvation = -31795.026710 eV Core-core repulsion = 27457.627758 eV Total energy + Delta-G solvation = -4337.398953 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -44.39227 -40.25842 -38.84994 -38.20671 -36.80556 -36.33591 -36.11598 -34.36804 -33.91752 -32.21512 -31.64657 -29.60996 -28.43798 -27.12538 -25.26853 -24.30118 -24.02989 -23.04801 -22.51738 -21.91273 -21.54078 -20.10649 -19.06188 -18.61949 -18.54302 -18.03542 -17.83407 -17.20732 -16.98853 -16.55630 -16.15386 -15.88357 -15.56027 -15.25015 -15.06326 -15.01606 -14.78832 -14.55341 -14.42253 -14.30077 -14.00157 -13.89425 -13.56049 -13.44659 -13.30457 -13.20554 -13.07001 -12.92763 -12.81212 -12.61634 -12.57732 -12.40330 -12.36805 -12.22154 -11.96492 -11.84366 -11.65839 -11.48849 -11.11715 -10.82226 -10.62645 -10.55446 -10.16045 -9.78550 -9.44571 -8.16899 -6.26093 -0.73192 -0.43995 0.21685 0.49922 1.38365 1.41452 1.48964 1.50095 1.71746 2.12084 2.42332 2.59708 2.80305 2.88733 3.07957 3.15355 3.32793 3.42917 3.73785 3.83051 3.90489 3.97566 4.03256 4.19614 4.20545 4.35136 4.41206 4.48665 4.51038 4.52445 4.61901 4.64240 4.72073 4.80456 4.86361 4.89119 4.91706 5.00312 5.06102 5.07822 5.14978 5.22981 5.25761 5.30071 5.39083 5.43118 5.61986 5.69400 5.74563 5.96744 6.14695 6.62456 6.81556 7.41211 8.91217 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.002504 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.701424 B =11180.280002 C =12631.262847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.196 3.804 3 N -0.514 5.514 4 C -0.021 4.021 5 C 0.037 3.963 6 C -0.125 4.125 7 C -0.034 4.034 8 C -0.680 4.680 9 S 2.690 3.310 10 O -0.993 6.993 11 O -0.971 6.971 12 N -0.983 5.983 13 C 0.271 3.729 14 C -0.533 4.533 15 H 0.058 0.942 16 C 0.012 3.988 17 N -0.926 5.926 18 Si 0.949 3.051 19 H -0.281 1.281 20 H -0.276 1.276 21 H -0.265 1.265 22 C 0.161 3.839 23 C -0.198 4.198 24 C -0.175 4.175 25 C -0.158 4.158 26 C -0.020 4.020 27 C -0.120 4.120 28 C -0.025 4.025 29 O -0.201 6.201 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.015 0.985 36 H 0.029 0.971 37 H 0.265 0.735 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.115 0.885 45 H 0.167 0.833 46 H 0.182 0.818 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.222 -24.331 -4.130 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.012 4.012 3 N -0.243 5.243 4 C -0.137 4.137 5 C 0.036 3.964 6 C -0.144 4.144 7 C -0.054 4.054 8 C -0.768 4.768 9 S 2.783 3.217 10 O -0.984 6.984 11 O -0.961 6.961 12 N -0.821 5.821 13 C 0.148 3.852 14 C -0.572 4.572 15 H 0.076 0.924 16 C -0.187 4.187 17 N -0.566 5.566 18 Si 0.775 3.225 19 H -0.207 1.207 20 H -0.201 1.201 21 H -0.189 1.189 22 C 0.036 3.964 23 C -0.218 4.218 24 C -0.212 4.212 25 C -0.196 4.196 26 C -0.039 4.039 27 C -0.138 4.138 28 C -0.096 4.096 29 O -0.088 6.088 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.123 0.877 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.033 0.967 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.125 0.875 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.133 0.867 45 H 0.185 0.815 46 H 0.199 0.801 47 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -8.181 -23.296 -4.738 25.141 hybrid contribution 0.124 0.906 0.272 0.954 sum -8.057 -22.390 -4.466 24.211 Atomic orbital electron populations 1.20563 0.78144 1.06560 1.06267 1.27195 0.98051 0.77757 0.98198 1.70449 1.02034 1.31784 1.20074 1.20268 0.90912 0.92627 1.09940 1.18244 0.91091 0.91738 0.95313 1.21337 0.98921 0.93287 1.00903 1.20918 0.91450 1.00496 0.92490 1.31020 1.16503 1.10678 1.18626 1.01694 0.73956 0.73045 0.72958 1.93534 1.83586 1.43758 1.77522 1.93488 1.52733 1.72916 1.76993 1.57272 1.56109 1.37639 1.31066 1.18663 0.92343 0.81871 0.92334 1.21821 1.04588 0.96880 1.33923 0.92356 1.25683 0.96856 1.01129 0.95062 1.70012 1.23050 1.26843 1.36745 0.85687 0.79716 0.79520 0.77606 1.20719 1.20140 1.18947 1.20899 0.85765 0.91241 0.98470 1.22944 0.92005 0.99298 1.07591 1.23056 1.01323 1.02137 0.94665 1.22995 0.99862 1.02734 0.93993 1.21161 1.01451 0.90014 0.91297 1.21553 0.89461 1.02127 1.00706 1.25815 0.85832 0.95010 1.02918 1.84484 1.17026 1.37685 1.69581 0.87122 0.86849 0.87746 0.84688 0.85598 0.96744 0.95292 0.92587 0.88528 0.89551 0.89359 0.87493 0.89693 0.88774 0.86666 0.81525 0.80084 0.72004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 71.24 0.75 0.32 16 2 C 0.20 3.37 8.32 88.36 0.74 4.11 16 3 N -0.51 -12.42 11.00 -293.01 -3.22 -15.64 16 4 C -0.02 -0.46 6.87 40.71 0.28 -0.18 16 5 C 0.04 0.93 5.88 -20.04 -0.12 0.81 16 6 C -0.13 -3.82 9.70 22.48 0.22 -3.60 16 7 C -0.03 -1.19 9.51 22.24 0.21 -0.97 16 8 C -0.68 -22.69 5.98 22.31 0.13 -22.56 16 9 S 2.69 109.25 5.59 -56.49 -0.32 108.93 16 10 O -0.99 -49.87 16.24 -128.00 -2.08 -51.95 16 11 O -0.97 -37.99 16.23 -128.00 -2.08 -40.06 16 12 N -0.98 -40.82 2.80 -519.85 -1.45 -42.27 16 13 C 0.27 13.87 5.12 85.63 0.44 14.30 16 14 C -0.53 -30.06 8.70 25.60 0.22 -29.84 16 15 H 0.06 3.29 6.16 -2.91 -0.02 3.27 16 16 C 0.01 0.67 5.46 84.65 0.46 1.13 16 17 N -0.93 -55.07 13.29 21.45 0.28 -54.79 16 18 Si 0.95 45.38 29.54 68.60 2.03 47.41 16 19 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 C 0.16 5.41 5.65 86.38 0.49 5.89 16 23 C -0.20 -6.90 5.90 -10.79 -0.06 -6.97 16 24 C -0.17 -5.06 10.18 30.60 0.31 -4.75 16 25 C -0.16 -4.14 10.25 30.60 0.31 -3.83 16 26 C -0.02 -0.50 9.51 22.24 0.21 -0.29 16 27 C -0.12 -2.38 9.57 22.48 0.22 -2.16 16 28 C -0.02 -0.36 11.57 67.19 0.78 0.42 16 29 O -0.20 -3.18 10.76 -3.08 -0.03 -3.21 16 30 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.14 4.05 7.87 -2.91 -0.02 4.03 16 34 H 0.13 4.74 7.60 -2.91 -0.02 4.72 16 35 H 0.01 0.81 7.61 -2.39 -0.02 0.79 16 36 H 0.03 1.51 8.00 -2.39 -0.02 1.49 16 37 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 38 H 0.10 2.57 7.34 -2.39 -0.02 2.55 16 39 H 0.09 2.70 8.00 -2.39 -0.02 2.68 16 40 H 0.09 3.78 5.77 -2.39 -0.01 3.77 16 41 H 0.11 2.79 8.03 -2.39 -0.02 2.77 16 42 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.17 3.28 7.60 -2.91 -0.02 3.26 16 46 H 0.18 1.64 7.03 -2.91 -0.02 1.62 16 47 H 0.26 1.04 7.30 -2.91 -0.02 1.02 16 Total: -1.00 -80.89 410.90 -0.29 -81.18 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 1.00 Total: 18.56 kcal Atomic # 6 Polarization: -53.75 SS G_CDS: 5.58 Total: -48.16 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -4.39 Total: -112.70 kcal Atomic # 8 Polarization: -91.03 SS G_CDS: -4.19 Total: -95.22 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 109.25 SS G_CDS: -0.32 Total: 108.93 kcal Total: -80.89 -0.29 -81.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096409578.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.695 kcal (2) G-P(sol) polarization free energy of solvation -80.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds