Wall clock time and date at job start Tue Mar 31 2020 05:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42099 * 110.54362 * 2 1 4 4 O 1.42105 * 110.54490 * 223.25334 * 2 1 3 5 5 C 1.76196 * 104.45240 * 111.62748 * 2 1 3 6 6 C 1.38287 * 119.97097 * 270.02403 * 5 2 1 7 7 C 1.38253 * 120.11096 * 180.02562 * 6 5 2 8 8 C 1.38161 * 120.05387 * 359.68319 * 7 6 5 9 9 C 1.38717 * 119.94466 * 0.57063 * 8 7 6 10 10 O 1.35902 * 120.05166 * 179.72209 * 9 8 7 11 11 C 1.42893 * 117.00420 * 359.72398 * 10 9 8 12 12 C 1.52999 * 109.46934 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.46911 * 65.00488 * 12 11 10 14 14 C 1.36933 * 120.00100 * 269.99505 * 13 12 11 15 15 H 1.08000 * 120.00252 * 142.59309 * 14 13 12 16 16 C 1.38811 * 120.00149 * 322.59309 * 14 13 12 17 17 N 1.31623 * 120.00078 * 157.91610 * 16 14 13 18 18 Si 1.86800 * 119.99954 * 337.92384 * 16 14 13 19 19 H 1.48499 * 109.47404 * 95.31639 * 18 16 14 20 20 H 1.48502 * 109.47132 * 215.31495 * 18 16 14 21 21 H 1.48496 * 109.47152 * 335.31536 * 18 16 14 22 22 C 1.46508 * 120.00070 * 89.99686 * 13 12 11 23 23 C 1.50701 * 109.46866 * 86.72032 * 22 13 12 24 24 C 1.38236 * 119.99627 * 272.96956 * 23 22 13 25 25 C 1.38237 * 119.99778 * 179.76653 * 24 23 22 26 26 C 1.38232 * 120.00151 * 0.51541 * 25 24 23 27 27 C 1.38240 * 119.99771 * 359.74270 * 26 25 24 28 28 C 1.38231 * 119.99958 * 359.97438 * 27 26 25 29 29 C 1.38123 * 119.97297 * 89.99762 * 5 2 1 30 30 H 1.08998 * 109.47146 * 308.37225 * 1 2 3 31 31 H 1.08998 * 109.47207 * 68.37491 * 1 2 3 32 32 H 1.09000 * 109.47069 * 188.37507 * 1 2 3 33 33 H 1.08001 * 119.94751 * 0.02562 * 6 5 2 34 34 H 1.07999 * 119.96931 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.02601 * 180.29266 * 8 7 6 36 36 H 1.09009 * 109.46711 * 60.00289 * 11 10 9 37 37 H 1.08994 * 109.47116 * 300.00065 * 11 10 9 38 38 H 1.09002 * 109.47094 * 185.00000 * 12 11 10 39 39 H 1.08998 * 109.47467 * 305.00001 * 12 11 10 40 40 H 0.96998 * 119.99724 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.46865 * 206.71590 * 22 13 12 42 42 H 1.08990 * 109.46933 * 326.71604 * 22 13 12 43 43 H 1.07998 * 120.00067 * 0.02562 * 24 23 22 44 44 H 1.08006 * 119.99953 * 180.23480 * 25 24 23 45 45 H 1.07999 * 120.00315 * 179.72323 * 26 25 24 46 46 H 1.07994 * 119.99456 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.00003 * 179.97438 * 28 27 26 48 48 H 1.07995 * 120.03017 * 0.02732 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9118 5 6 2.2537 -0.6289 1.5861 6 6 2.4256 0.2382 2.6496 7 6 2.7712 -0.2521 3.8952 8 6 2.9392 -1.6107 4.0819 9 6 2.7725 -2.4820 3.0155 10 8 2.9428 -3.8182 3.1953 11 6 3.2991 -4.2560 4.5081 12 6 3.4452 -5.7790 4.5156 13 7 4.5693 -6.1659 3.6597 14 6 4.3615 -6.4218 2.3306 15 1 5.0995 -6.1223 1.6012 16 6 3.2023 -7.0661 1.9208 17 7 2.7813 -6.9375 0.6803 18 14 2.2397 -8.1155 3.1297 19 1 1.1476 -7.3062 3.7276 20 1 1.6586 -9.2826 2.4188 21 1 3.1477 -8.5920 4.2039 22 6 5.9159 -6.2792 4.2256 23 6 6.1076 -7.6620 4.7931 24 6 5.7252 -7.9346 6.0933 25 6 5.8965 -9.2043 6.6123 26 6 6.4600 -10.1986 5.8347 27 6 6.8473 -9.9246 4.5363 28 6 6.6706 -8.6565 4.0154 29 6 2.4259 -1.9874 1.7663 30 1 -0.3633 0.6379 0.8057 31 1 -0.3633 0.3787 -0.9553 32 1 -0.3633 -1.0167 0.1497 33 1 2.2898 1.3000 2.5069 34 1 2.9053 0.4271 4.7241 35 1 3.2046 -1.9936 5.0563 36 1 2.5208 -3.9625 5.2126 37 1 4.2444 -3.7985 4.7995 38 1 3.6293 -6.1213 5.5340 39 1 2.5288 -6.2338 4.1396 40 1 1.9711 -7.3874 0.3941 41 1 6.6546 -6.1016 3.4440 42 1 6.0403 -5.5409 5.0177 43 1 5.2887 -7.1567 6.7022 44 1 5.5943 -9.4183 7.6269 45 1 6.5980 -11.1895 6.2417 46 1 7.2879 -10.7014 3.9290 47 1 6.9736 -8.4423 3.0011 48 1 2.2915 -2.6641 0.9354 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096414830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:42 Heat of formation + Delta-G solvation = -15.207684 kcal Electronic energy + Delta-G solvation = -31785.910621 eV Core-core repulsion = 27514.123079 eV Total energy + Delta-G solvation = -4271.787542 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.134 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -39.87336 -38.80014 -37.40409 -37.05977 -35.91313 -35.72066 -32.01972 -31.44236 -31.16470 -30.42085 -29.92578 -29.56187 -28.48280 -25.85477 -24.17678 -22.74351 -22.29737 -22.05487 -21.53922 -20.07344 -19.09461 -18.22200 -16.94225 -16.40549 -16.27127 -16.16969 -16.08734 -15.91867 -15.64154 -15.11102 -14.95837 -14.72841 -14.47039 -14.15590 -13.84075 -13.46286 -13.35979 -13.26896 -13.03443 -12.90218 -12.88376 -12.45093 -12.28721 -12.21797 -12.13384 -12.04503 -12.00071 -11.76195 -11.46297 -11.18920 -11.04982 -10.93542 -10.83929 -10.64968 -10.53329 -10.50066 -10.28034 -9.89978 -9.55860 -9.30484 -8.57802 -8.44877 -8.20971 -8.00305 -6.96721 -5.96987 -3.39172 0.03305 0.89495 1.49404 1.84375 1.88195 2.84062 3.26475 3.45749 3.52305 3.52474 3.63251 3.96684 4.14815 4.23067 4.52052 4.64173 4.75945 4.88796 4.91643 5.01904 5.12268 5.27565 5.31613 5.34178 5.37632 5.44398 5.49137 5.52636 5.55011 5.62073 5.66358 5.76336 5.89670 5.91128 5.99013 6.04470 6.14038 6.14501 6.29509 6.36633 6.44788 6.50592 6.51845 6.60247 6.72501 6.90035 6.95756 7.22884 7.50475 7.83297 8.01935 8.36657 8.91028 9.69305 10.03036 11.17784 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.002416 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.977218 B =11588.613324 C =12374.570765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.501 3.499 3 O -0.942 6.942 4 O -0.928 6.928 5 C -0.621 4.621 6 C -0.083 4.083 7 C -0.102 4.102 8 C -0.170 4.170 9 C 0.128 3.872 10 O -0.262 6.262 11 C 0.042 3.958 12 C 0.134 3.866 13 N -0.587 5.587 14 C -0.257 4.257 15 H 0.081 0.919 16 C 0.048 3.952 17 N -0.889 5.889 18 Si 0.863 3.137 19 H -0.289 1.289 20 H -0.302 1.302 21 H -0.263 1.263 22 C 0.177 3.823 23 C -0.082 4.082 24 C -0.122 4.122 25 C -0.128 4.128 26 C -0.140 4.140 27 C -0.124 4.124 28 C -0.100 4.100 29 C -0.054 4.054 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.122 0.878 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 10.031 8.788 13.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.680 3.320 3 O -0.940 6.940 4 O -0.925 6.925 5 C -0.708 4.708 6 C -0.102 4.102 7 C -0.121 4.121 8 C -0.189 4.189 9 C 0.080 3.920 10 O -0.173 6.173 11 C -0.036 4.036 12 C 0.008 3.992 13 N -0.307 5.307 14 C -0.385 4.385 15 H 0.099 0.901 16 C -0.153 4.153 17 N -0.529 5.529 18 Si 0.694 3.306 19 H -0.217 1.217 20 H -0.230 1.230 21 H -0.187 1.187 22 C 0.052 3.948 23 C -0.085 4.085 24 C -0.141 4.141 25 C -0.146 4.146 26 C -0.158 4.158 27 C -0.142 4.142 28 C -0.118 4.118 29 C -0.074 4.074 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.140 0.860 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.805 10.078 7.833 12.891 hybrid contribution -1.246 -1.083 1.739 2.398 sum -3.051 8.994 9.572 13.484 Atomic orbital electron populations 1.30225 1.26009 1.12305 1.11505 1.05146 0.77814 0.74555 0.74443 1.93563 1.77422 1.36747 1.86244 1.93644 1.76926 1.61176 1.60739 1.30323 1.17011 1.01784 1.21705 1.20673 0.98669 0.98995 0.91850 1.20977 0.99133 0.94705 0.97251 1.21594 1.03906 0.94351 0.99009 1.19346 0.94109 0.84886 0.93665 1.86577 1.81949 1.16818 1.31942 1.23768 0.98084 0.99610 0.82128 1.21348 0.93445 0.89703 0.94737 1.44162 1.02100 1.77419 1.06987 1.18653 1.06516 1.32732 0.80584 0.90149 1.25365 0.97659 0.97317 0.95000 1.69866 1.22891 1.42969 1.17171 0.87148 0.79981 0.81075 0.82417 1.21709 1.23024 1.18739 1.20086 0.88771 0.89590 0.96373 1.21031 0.95022 0.99441 0.93002 1.20951 1.00947 0.96523 0.95648 1.20992 1.00539 0.93723 0.99354 1.20948 1.01312 0.98650 0.94933 1.21105 1.00728 0.96903 0.95501 1.21087 0.98543 0.92683 0.99523 1.20316 0.97186 0.93211 0.96674 0.85167 0.85146 0.84699 0.84575 0.85420 0.85081 0.93534 0.92613 0.91816 0.91661 0.92786 0.91527 0.93533 0.87133 0.87130 0.87128 0.86837 0.85994 0.82778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.69 10.80 101.05 1.09 -3.60 16 2 S 2.50 29.65 5.80 -107.50 -0.62 29.03 16 3 O -0.94 -13.03 17.12 -57.54 -0.99 -14.02 16 4 O -0.93 -15.15 17.12 -57.54 -0.99 -16.14 16 5 C -0.62 -8.56 5.65 -39.61 -0.22 -8.78 16 6 C -0.08 -1.01 9.47 -39.56 -0.37 -1.39 16 7 C -0.10 -1.22 10.04 -39.60 -0.40 -1.62 16 8 C -0.17 -2.37 9.04 -39.43 -0.36 -2.72 16 9 C 0.13 2.24 6.69 -39.21 -0.26 1.98 16 10 O -0.26 -5.36 9.61 -19.43 -0.19 -5.55 16 11 C 0.04 0.72 5.08 37.16 0.19 0.91 16 12 C 0.13 2.64 4.95 -4.04 -0.02 2.62 16 13 N -0.59 -12.79 2.05 -174.61 -0.36 -13.15 16 14 C -0.26 -6.77 9.41 -15.06 -0.14 -6.91 16 15 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 16 C 0.05 1.34 5.31 -17.43 -0.09 1.25 16 17 N -0.89 -26.56 13.97 55.49 0.78 -25.79 16 18 Si 0.86 21.74 25.02 -169.99 -4.25 17.49 16 19 H -0.29 -7.06 6.67 56.52 0.38 -6.69 16 20 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 21 H -0.26 -6.57 7.11 56.52 0.40 -6.16 16 22 C 0.18 3.26 5.80 -5.19 -0.03 3.23 16 23 C -0.08 -1.48 5.46 -104.62 -0.57 -2.05 16 24 C -0.12 -2.00 9.46 -39.58 -0.37 -2.37 16 25 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 26 C -0.14 -2.11 10.05 -39.58 -0.40 -2.51 16 27 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 28 C -0.10 -1.79 9.69 -39.59 -0.38 -2.17 16 29 C -0.05 -0.92 9.41 -39.43 -0.37 -1.29 16 30 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.13 0.92 8.14 -51.92 -0.42 0.50 16 33 H 0.14 1.34 7.57 -52.49 -0.40 0.94 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.13 1.56 6.30 -52.48 -0.33 1.23 16 36 H 0.05 0.66 7.65 -51.92 -0.40 0.26 16 37 H 0.06 0.86 7.67 -51.93 -0.40 0.46 16 38 H 0.06 1.08 7.39 -51.93 -0.38 0.69 16 39 H 0.07 1.47 3.22 -51.93 -0.17 1.31 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 41 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 42 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 43 H 0.11 1.59 7.64 -52.49 -0.40 1.19 16 44 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 45 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 46 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 47 H 0.12 2.18 8.06 -52.48 -0.42 1.76 16 48 H 0.15 2.81 7.57 -52.49 -0.40 2.42 16 LS Contribution 410.05 15.07 6.18 6.18 Total: -1.00 -36.58 410.05 -10.62 -47.19 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.67 Total: 4.91 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: -3.51 Total: -30.16 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.42 Total: -38.93 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -2.16 Total: -35.70 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.25 Total: 17.49 kcal Atomic # 16 Polarization: 29.65 SS G_CDS: -0.62 Total: 29.03 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.58 -10.62 -47.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096414830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.985 kcal (2) G-P(sol) polarization free energy of solvation -36.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds