Wall clock time and date at job start Tue Mar 31 2020 05:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42099 * 110.54362 * 2 1 4 4 O 1.42105 * 110.54490 * 223.25334 * 2 1 3 5 5 C 1.76196 * 104.45240 * 111.62748 * 2 1 3 6 6 C 1.38287 * 119.97097 * 270.02403 * 5 2 1 7 7 C 1.38253 * 120.11096 * 180.02562 * 6 5 2 8 8 C 1.38161 * 120.05387 * 359.68319 * 7 6 5 9 9 C 1.38717 * 119.94466 * 0.57063 * 8 7 6 10 10 O 1.35902 * 120.05166 * 179.72209 * 9 8 7 11 11 C 1.42893 * 117.00420 * 359.72398 * 10 9 8 12 12 C 1.52999 * 109.46934 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.46911 * 65.00488 * 12 11 10 14 14 C 1.36933 * 120.00100 * 269.99505 * 13 12 11 15 15 H 1.08000 * 120.00252 * 142.59309 * 14 13 12 16 16 C 1.38811 * 120.00149 * 322.59309 * 14 13 12 17 17 N 1.31623 * 120.00078 * 157.91610 * 16 14 13 18 18 Si 1.86800 * 119.99954 * 337.92384 * 16 14 13 19 19 H 1.48499 * 109.47404 * 95.31639 * 18 16 14 20 20 H 1.48502 * 109.47132 * 215.31495 * 18 16 14 21 21 H 1.48496 * 109.47152 * 335.31536 * 18 16 14 22 22 C 1.46508 * 120.00070 * 89.99686 * 13 12 11 23 23 C 1.50701 * 109.46866 * 86.72032 * 22 13 12 24 24 C 1.38236 * 119.99627 * 272.96956 * 23 22 13 25 25 C 1.38237 * 119.99778 * 179.76653 * 24 23 22 26 26 C 1.38232 * 120.00151 * 0.51541 * 25 24 23 27 27 C 1.38240 * 119.99771 * 359.74270 * 26 25 24 28 28 C 1.38231 * 119.99958 * 359.97438 * 27 26 25 29 29 C 1.38123 * 119.97297 * 89.99762 * 5 2 1 30 30 H 1.08998 * 109.47146 * 308.37225 * 1 2 3 31 31 H 1.08998 * 109.47207 * 68.37491 * 1 2 3 32 32 H 1.09000 * 109.47069 * 188.37507 * 1 2 3 33 33 H 1.08001 * 119.94751 * 0.02562 * 6 5 2 34 34 H 1.07999 * 119.96931 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.02601 * 180.29266 * 8 7 6 36 36 H 1.09009 * 109.46711 * 60.00289 * 11 10 9 37 37 H 1.08994 * 109.47116 * 300.00065 * 11 10 9 38 38 H 1.09002 * 109.47094 * 185.00000 * 12 11 10 39 39 H 1.08998 * 109.47467 * 305.00001 * 12 11 10 40 40 H 0.96998 * 119.99724 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.46865 * 206.71590 * 22 13 12 42 42 H 1.08990 * 109.46933 * 326.71604 * 22 13 12 43 43 H 1.07998 * 120.00067 * 0.02562 * 24 23 22 44 44 H 1.08006 * 119.99953 * 180.23480 * 25 24 23 45 45 H 1.07999 * 120.00315 * 179.72323 * 26 25 24 46 46 H 1.07994 * 119.99456 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.00003 * 179.97438 * 28 27 26 48 48 H 1.07995 * 120.03017 * 0.02732 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9118 5 6 2.2537 -0.6289 1.5861 6 6 2.4256 0.2382 2.6496 7 6 2.7712 -0.2521 3.8952 8 6 2.9392 -1.6107 4.0819 9 6 2.7725 -2.4820 3.0155 10 8 2.9428 -3.8182 3.1953 11 6 3.2991 -4.2560 4.5081 12 6 3.4452 -5.7790 4.5156 13 7 4.5693 -6.1659 3.6597 14 6 4.3615 -6.4218 2.3306 15 1 5.0995 -6.1223 1.6012 16 6 3.2023 -7.0661 1.9208 17 7 2.7813 -6.9375 0.6803 18 14 2.2397 -8.1155 3.1297 19 1 1.1476 -7.3062 3.7276 20 1 1.6586 -9.2826 2.4188 21 1 3.1477 -8.5920 4.2039 22 6 5.9159 -6.2792 4.2256 23 6 6.1076 -7.6620 4.7931 24 6 5.7252 -7.9346 6.0933 25 6 5.8965 -9.2043 6.6123 26 6 6.4600 -10.1986 5.8347 27 6 6.8473 -9.9246 4.5363 28 6 6.6706 -8.6565 4.0154 29 6 2.4259 -1.9874 1.7663 30 1 -0.3633 0.6379 0.8057 31 1 -0.3633 0.3787 -0.9553 32 1 -0.3633 -1.0167 0.1497 33 1 2.2898 1.3000 2.5069 34 1 2.9053 0.4271 4.7241 35 1 3.2046 -1.9936 5.0563 36 1 2.5208 -3.9625 5.2126 37 1 4.2444 -3.7985 4.7995 38 1 3.6293 -6.1213 5.5340 39 1 2.5288 -6.2338 4.1396 40 1 1.9711 -7.3874 0.3941 41 1 6.6546 -6.1016 3.4440 42 1 6.0403 -5.5409 5.0177 43 1 5.2887 -7.1567 6.7022 44 1 5.5943 -9.4183 7.6269 45 1 6.5980 -11.1895 6.2417 46 1 7.2879 -10.7014 3.9290 47 1 6.9736 -8.4423 3.0011 48 1 2.2915 -2.6641 0.9354 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096414830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:41 Heat of formation + Delta-G solvation = -40.219951 kcal Electronic energy + Delta-G solvation = -31786.995234 eV Core-core repulsion = 27514.123079 eV Total energy + Delta-G solvation = -4272.872155 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.134 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.08355 -40.09033 -38.66509 -38.13917 -37.30909 -36.97568 -33.93701 -32.77934 -32.31141 -31.66307 -31.18498 -30.26628 -29.90679 -27.50545 -25.57878 -24.06142 -23.54005 -23.33069 -22.87712 -21.53805 -20.20109 -19.29867 -18.82992 -17.74410 -17.42576 -17.30296 -17.17729 -17.10195 -16.90777 -16.56899 -16.23286 -16.03862 -15.82954 -15.69402 -14.87044 -14.83874 -14.64897 -14.44422 -14.16400 -14.08370 -13.95451 -13.81978 -13.71508 -13.53118 -13.42340 -13.15430 -13.11646 -13.06124 -12.93572 -12.63235 -12.38082 -12.34018 -12.12717 -12.05159 -11.89377 -11.81348 -11.67801 -11.51958 -11.36598 -10.61886 -10.35028 -9.70120 -9.52779 -9.21139 -8.80075 -8.12001 -5.49421 -0.86721 -0.19306 0.38458 0.58664 0.62148 1.24371 1.38935 1.49313 1.88246 2.40007 2.43779 2.47737 2.92106 3.03434 3.12619 3.24395 3.54789 3.77471 3.97295 4.05939 4.08286 4.09205 4.13135 4.16481 4.20245 4.25924 4.27683 4.34558 4.39436 4.42618 4.50785 4.54321 4.60618 4.74306 4.87472 4.87742 4.89700 4.94126 5.04923 5.05944 5.24596 5.25664 5.28661 5.30836 5.67278 5.69220 5.70282 5.87672 6.01437 6.21453 6.26952 6.62542 7.00890 7.66204 8.04234 9.08120 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.002416 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.977218 B =11588.613324 C =12374.570765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.621 4.621 2 S 2.503 3.497 3 O -0.964 6.964 4 O -0.988 6.988 5 C -0.621 4.621 6 C -0.079 4.079 7 C -0.092 4.092 8 C -0.164 4.164 9 C 0.096 3.904 10 O -0.312 6.312 11 C 0.042 3.958 12 C 0.127 3.873 13 N -0.598 5.598 14 C -0.228 4.228 15 H 0.032 0.968 16 C -0.010 4.010 17 N -0.946 5.946 18 Si 0.933 3.067 19 H -0.278 1.278 20 H -0.320 1.320 21 H -0.253 1.253 22 C 0.180 3.820 23 C -0.102 4.102 24 C -0.126 4.126 25 C -0.129 4.129 26 C -0.138 4.138 27 C -0.135 4.135 28 C -0.128 4.128 29 C -0.092 4.092 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.141 0.859 33 H 0.168 0.832 34 H 0.173 0.827 35 H 0.156 0.844 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.036 0.964 40 H 0.257 0.743 41 H 0.047 0.953 42 H 0.080 0.920 43 H 0.135 0.865 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.130 0.870 47 H 0.102 0.898 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.395 11.600 13.724 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.775 4.775 2 S 2.686 3.314 3 O -0.962 6.962 4 O -0.985 6.985 5 C -0.707 4.707 6 C -0.098 4.098 7 C -0.110 4.110 8 C -0.183 4.183 9 C 0.049 3.951 10 O -0.225 6.225 11 C -0.035 4.035 12 C 0.002 3.998 13 N -0.319 5.319 14 C -0.358 4.358 15 H 0.050 0.950 16 C -0.206 4.206 17 N -0.591 5.591 18 Si 0.763 3.237 19 H -0.206 1.206 20 H -0.250 1.250 21 H -0.177 1.177 22 C 0.056 3.944 23 C -0.104 4.104 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.156 4.156 27 C -0.153 4.153 28 C -0.147 4.147 29 C -0.112 4.112 30 H 0.183 0.817 31 H 0.176 0.824 32 H 0.160 0.840 33 H 0.186 0.814 34 H 0.190 0.810 35 H 0.174 0.826 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.153 0.847 44 H 0.163 0.837 45 H 0.160 0.840 46 H 0.148 0.852 47 H 0.121 0.879 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.888 11.657 12.843 17.583 hybrid contribution -0.799 -1.426 0.253 1.654 sum -3.687 10.231 13.096 17.023 Atomic orbital electron populations 1.30000 1.18959 1.13928 1.14590 1.04971 0.80351 0.73018 0.73077 1.93522 1.79695 1.36830 1.86120 1.93577 1.79945 1.62634 1.62374 1.30491 1.16586 1.00477 1.23117 1.21198 0.96841 1.00226 0.91485 1.21520 0.96781 0.94414 0.98332 1.21873 1.02844 0.94778 0.98771 1.19590 0.96198 0.84345 0.94936 1.86488 1.83126 1.18996 1.33876 1.23746 1.00187 0.97681 0.81879 1.21483 0.91093 0.91549 0.95676 1.44146 1.03990 1.78098 1.05637 1.18347 1.04638 1.30362 0.82432 0.95021 1.25880 0.99238 0.99106 0.96348 1.70023 1.24026 1.45382 1.19650 0.86032 0.78931 0.78597 0.80158 1.20555 1.24962 1.17693 1.20082 0.86349 0.91355 0.96662 1.20957 0.96604 0.98551 0.94332 1.21252 1.00408 0.97978 0.94852 1.21447 0.99323 0.93007 1.00863 1.21390 0.99824 1.00260 0.94175 1.21372 1.00813 0.96430 0.96643 1.21171 1.00123 0.94214 0.99166 1.20188 1.00457 0.94397 0.96165 0.81733 0.82359 0.84014 0.81445 0.80976 0.82602 0.90003 0.90927 0.88139 0.94606 0.93387 0.93412 0.90183 0.84700 0.83687 0.83977 0.85191 0.87936 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -7.38 10.80 113.37 1.22 -6.15 16 2 S 2.50 60.35 5.80 -56.49 -0.33 60.02 16 3 O -0.96 -26.12 17.12 -127.65 -2.19 -28.30 16 4 O -0.99 -35.33 17.12 -127.65 -2.19 -37.52 16 5 C -0.62 -17.27 5.65 22.25 0.13 -17.14 16 6 C -0.08 -1.73 9.47 22.28 0.21 -1.52 16 7 C -0.09 -1.86 10.04 22.25 0.22 -1.64 16 8 C -0.16 -4.21 9.04 22.37 0.20 -4.01 16 9 C 0.10 3.46 6.69 22.51 0.15 3.61 16 10 O -0.31 -13.28 9.61 -92.44 -0.89 -14.17 16 11 C 0.04 1.38 5.08 71.98 0.37 1.74 16 12 C 0.13 4.84 4.95 86.38 0.43 5.27 16 13 N -0.60 -26.47 2.05 -706.34 -1.45 -27.92 16 14 C -0.23 -12.82 9.41 84.03 0.79 -12.03 16 15 H 0.03 2.06 8.06 -2.91 -0.02 2.03 16 16 C -0.01 -0.56 5.31 84.86 0.45 -0.11 16 17 N -0.95 -61.06 13.97 21.65 0.30 -60.76 16 18 Si 0.93 47.06 25.02 68.60 1.72 48.77 16 19 H -0.28 -13.32 6.67 99.48 0.66 -12.66 16 20 H -0.32 -16.85 7.11 99.48 0.71 -16.14 16 21 H -0.25 -12.15 7.11 99.48 0.71 -11.44 16 22 C 0.18 6.63 5.80 85.63 0.50 7.13 16 23 C -0.10 -3.59 5.46 -19.87 -0.11 -3.69 16 24 C -0.13 -3.71 9.46 22.27 0.21 -3.50 16 25 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 26 C -0.14 -3.71 10.05 22.27 0.22 -3.48 16 27 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 28 C -0.13 -4.67 9.69 22.27 0.22 -4.45 16 29 C -0.09 -3.38 9.41 22.37 0.21 -3.17 16 30 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.16 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.17 2.62 7.57 -2.91 -0.02 2.59 16 34 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 35 H 0.16 3.11 6.30 -2.91 -0.02 3.09 16 36 H 0.08 2.06 7.65 -2.38 -0.02 2.04 16 37 H 0.07 2.08 7.67 -2.39 -0.02 2.06 16 38 H 0.10 3.03 7.39 -2.39 -0.02 3.01 16 39 H 0.04 1.60 3.22 -2.39 -0.01 1.59 16 40 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 41 H 0.05 1.89 7.93 -2.38 -0.02 1.87 16 42 H 0.08 2.38 8.06 -2.39 -0.02 2.36 16 43 H 0.14 3.23 7.64 -2.91 -0.02 3.20 16 44 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 45 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 46 H 0.13 3.45 8.06 -2.91 -0.02 3.42 16 47 H 0.10 3.98 8.06 -2.91 -0.02 3.96 16 48 H 0.12 4.98 7.57 -2.91 -0.02 4.96 16 Total: -1.00 -89.49 410.05 1.78 -87.72 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.92 Total: 22.39 kcal Atomic # 6 Polarization: -56.10 SS G_CDS: 5.87 Total: -50.23 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -1.14 Total: -88.68 kcal Atomic # 8 Polarization: -74.74 SS G_CDS: -5.26 Total: -80.00 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.72 Total: 48.77 kcal Atomic # 16 Polarization: 60.35 SS G_CDS: -0.33 Total: 60.02 kcal Total: -89.49 1.78 -87.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096414830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.497 kcal (2) G-P(sol) polarization free energy of solvation -89.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds